BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495347
Length=1346
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52830.1 | Symbols: WRKY27, ATWRKY27 | WRKY DNA-binding prot... 1402 0.0
AT1G30650.1 | Symbols: WRKY14, ATWRKY14, AR411 | WRKY DNA-bindi... 137 2e-31
AT3G58710.1 | Symbols: WRKY69, ATWRKY69 | WRKY DNA-binding prot... 100 3e-20
> AT5G52830.1 | Symbols: WRKY27, ATWRKY27 | WRKY DNA-binding protein
27 | chr5:21410852-21412340 FORWARD LENGTH=1313
Length=1313
Score = 1402 bits (759), Expect = 0.0
Identities = 943/1025 (92%), Gaps = 39/1025 (4%)
Strand=Plus/Plus
Query 337 cttcttcttcttGCAACGAGCTACAAGATTCTTGCAAACCTTTTTTACCAG---CTACTA 393
|||||||||||||||||||| ||||||||||||||||||| |||||||| | ||||||
Sbjct 290 CTTCTTCTTCTTGCAACGAGTTACAAGATTCTTGCAAACCATTTTTACCCGTTACTACTA 349
Query 394 CTAC-A--ACTACTTGGTCTCCTCCTCCTCTACTTCCTCCTCCTACAGTCTCATCATCAC 450
|||| | ||||||||||||||||||||||||||||||||||||| || | | |||||||
Sbjct 350 CTACTACTACTACTTGGTCTCCTCCTCCTCTACTTCCTCCTCCTAAAG-C-C-TCATCAC 406
Query 451 CATCTCCTAAAATCTTAATGAAACAAGAACAAGTACTACAAGAATCACAAGATCAAAAAC 510
||||||| || |||||| | ||||||||||||||||| | |||||||||||||||||||
Sbjct 407 CATCTCCCAATATCTTACTAAAACAAGAACAAGTACTTCTCGAATCACAAGATCAAAAAC 466
Query 511 CTCCACTTAGTGTTAGGGTTTTCCCATCATCCActtcttcttcttcttctGTCTTTGTTT 570
|||| ||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 467 CTCCTCTTAGTGTTAGGGTTTTCCCACCATCCA------CTTCTTCTTCTGTCTTTGTTT 520
Query 571 TTAGAGGTCAACGCGACCAGCTTCTTCATCAACAATCTCAACCTCCTCTTCGATCTAGAA 630
|||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 521 TTAGAGGTCAACGCGACCAGCTTCTTCAACAACAATCCCAACCTCCCCTTCGATCTAGAA 580
Query 631 AAAGAAAGAATCAGCAAAAAAGAACCATATGTCATGTAACGCAAGAGAATCTTTCTTCTG 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 AAAGAAAGAATCAGCAAAAAAGAACCATATGTCATGTAACGCAAGAGAATCTTTCTTCTG 640
Query 691 ATTTGTGGGCTTGGCGTAAATACGGTCAAAAACCCATCAAAGGCTCTCCTTATCCAAGGA 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 ATTTGTGGGCTTGGCGTAAATACGGTCAAAAACCCATCAAAGGCTCTCCTTATCCAAGGA 700
Query 751 ATTATTACAGATGTAGTAGCTCAAAAGGATGTTTAGCTCGAAAACAAGTTGAAAGAAGTA 810
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 701 ATTATTACAGATGTAGTAGCTCAAAAGGATGTTTAGCACGAAAACAAGTTGAAAGAAGTA 760
Query 811 ATTTAGATCCTAATATCTTCATCGTTACTTACACCGGAGAACACACTCATCCACGTCCTA 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 ATTTAGATCCTAATATCTTCATCGTTACTTACACCGGAGAACACACTCATCCACGTCCTA 820
Query 871 CTCACCGGAACTCTCTCGCTGGAAGTACTCGTAACAAATCTCAACCCGTTAACCCGGTTC 930
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 821 CTCACCGGAACTCTCTCGCCGGAAGTACTCGTAACAAATCTCAGCCCGTTAACCCGGTTC 880
Query 931 CTAAACCCAACAACCCATCTCCTTTATCGGATACAGTAAAAGAAGAGATTCATCTTTCTC 990
||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 CTAAACCGGACA-C--ATCTCCTTTATCGGATACAGTAAAAGAAGAGATTCATCTTTCTC 937
Query 991 CGACGACACCGTTGAAAGGAAACGACGACGTTCAAGTAACAAACGGTGATGAAGATATTA 1050
||||||||||||||||||||||||| |||||||||| ||| || || |||||||||||
Sbjct 938 CGACGACACCGTTGAAAGGAAACGATGACGTTCAAGAAACGAATGGAGATGAAGATATGG 997
Query 1051 TTAGTCAAGAAGTCAACATGGACGACgaagaggaggaagaagaagaagtagaagaagaag 1110
|| ||||||||||||||||||| || ||||||||||||||||||| | |||||| || |
Sbjct 998 TTGGTCAAGAAGTCAACATGGAAGAGGAAGAGGAGGAAGAAGAAGTGGAAGAAGATGATG 1057
Query 1111 aagaagatgatgatgatggtgaagatgatgaCGTGGATAATCTTTTGATACCGAATTTAG 1170
||||||| || | |||| | ||||||||||||| ||||||||||||| |||||||
Sbjct 1058 AAGAAGAAGA--A-GATG---A---TGATGACGTGGATGATCTTTTGATACCAAATTTAG 1108
Query 1171 CAGTGAGAGATCGAGATGATTTGTTCTTCGCTGGAAATTTTCCATCTTGGTCCGCCGGAT 1230
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1109 CGGTGAGAGATCGAGATGATTTGTTCTTCGCTGGAAGTTTTCCATCTTGGTCCGCCGGAT 1168
Query 1231 CCGCCGGAGACGGTGGTGGATGATGAAAACGAATAATATCTCAatttacaa---a-aa-- 1284
||||||| |||||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct 1169 CCGCCGGTGACGGTGGTGGATGATGAAAACGAATAAAATCTCAATTTACAATTTACAAAA 1228
Query 1285 -gaaaaa-gtcagtttttaattattattattt-tttgttaaaaaaCTTGACATTTATTGT 1341
|||||| |||||||||||||||||||| ||| |||||||||| |||||||||||||||
Sbjct 1229 AGAAAAAAGTCAGTTTTTAATTATTATT-TTTGTTTGTTAAAA--CTTGACATTTATTGT 1285
Query 1342 GTTAT 1346
|||||
Sbjct 1286 GTTAT 1290
Score = 414 bits (224), Expect = 9e-115
Identities = 274/296 (93%), Gaps = 11/296 (4%)
Strand=Plus/Plus
Query 1 CTCTCGGACACTGCCCCAAtctctctctctctTTCGACAAAGAAAAAGTCAGCGCCGTCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTCGGACACTGCCCCAATCTCTCTCTCTCTTTCGACAAAGAAAAAGTCAGCGCCGTCC 60
Query 61 TTTACGCCATAGTTTGtctccttctctctctctcttcctctcACCAACATCCAAGCAAAT 120
||||||||||||||||||||| || ||||||||| ||||||||||||||| || ||||
Sbjct 61 TTTACGCCATAGTTTGTCTCC-TC-CTCTCTCTCCTCCTCTCACCAACAT--AATCAAAG 116
Query 121 AAGCTTTCCTAAAAACCCACGAATTCAAGATCACCATGTCCTCCGAGGATTGGGATCTCT 180
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 117 AAGCTTTCCT-------CACGAATTCAAGATCGCCATGTCCTCCGAGGATTGGGATCTCT 169
Query 181 TCGCCGTCGTCAGAAGCTGCAGCTCTTCTGTTTCCATCACCAACTCCTGTGCTGGTCATG 240
|||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||
Sbjct 170 TCGCCGTCGTCAGAAGCTGCAGCTCTTCTGTTTCCACCACCAATTCTTGTGCTGGTCATG 229
Query 241 AAGACAACAGAGGAAACTGTAAACAAGAACAAGATCCTCCTCCTCCCCCTCTGTTT 296
||||| ||| |||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 230 AAGACGACATAGGAAACTGTAAACAACAACAAGATCCTCCTCCTCCTCCTCTGTTT 285
> AT1G30650.1 | Symbols: WRKY14, ATWRKY14, AR411 | WRKY DNA-binding
protein 14 | chr1:10868303-10871297 FORWARD LENGTH=1926
Length=1926
Score = 137 bits (74), Expect = 2e-31
Identities = 100/113 (88%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 696 TGGGCTTGGCGTAAATACGGTCAAAAACCCATCAAAGGCTCTCCTTATCCAAGGAATTAT 755
||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||
Sbjct 967 TGGGCTTGGCGTAAATACGGTCAAAAACCTATCAAAGGCTCTCCTTTTCCAAGGGGTTAT 1026
Query 756 TACAGATGTAGTAGCTCAAAAGGATGTTTAGCTCGAAAACAAGTTGAAAGAAG 808
|| ||||| || ||||||||||| |||| ||| |||| ||||| ||||||||
Sbjct 1027 TATAGATGCAGCAGCTCAAAAGGTTGTTCAGCAAGAAAGCAAGTCGAAAGAAG 1079
> AT3G58710.1 | Symbols: WRKY69, ATWRKY69 | WRKY DNA-binding protein
69 | chr3:21715007-21716916 FORWARD LENGTH=1154
Length=1154
Score = 100 bits (54), Expect = 3e-20
Identities = 78/89 (88%), Gaps = 4/89 (4%)
Strand=Plus/Plus
Query 696 TGGGCTTGGCGTAAA-TACGGTCAAAAACCCATCAAAGGCTCTCCTTAT-CCAAGGAATT 753
||||| ||| | ||| ||||| |||||||| ||||||||||| |||||| ||| || | |
Sbjct 405 TGGGCCTGGAG-AAAGTACGGACAAAAACCGATCAAAGGCTCGCCTTATCCCAGGGGA-T 462
Query 754 ATTACAGATGTAGTAGCTCAAAAGGATGT 782
|||||||||||||||||||||||||||||
Sbjct 463 ATTACAGATGTAGTAGCTCAAAAGGATGT 491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66264719400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5