BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495348
Length=785
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52840.1 | Symbols: | NADH-ubiquinone oxidoreductase-relate... 1182 0.0
AT5G52850.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 117 2e-25
> AT5G52840.1 | Symbols: | NADH-ubiquinone oxidoreductase-related
| chr5:21413646-21415006 FORWARD LENGTH=794
Length=794
Score = 1182 bits (640), Expect = 0.0
Identities = 745/794 (94%), Gaps = 14/794 (2%)
Strand=Plus/Plus
Query 2 AACAACAAACAACATTTCTGAGATTTCGCCGGAGT-TACG-GA--GAGAGAGCGATCCAG 57
||| ||||||||||||||||||||| ||||||||| | | || ||||||||||||||
Sbjct 5 AACTACAAACAACATTTCTGAGATTGCGCCGGAGTCAAGGAGAGGGAGAGAGCGATCCAA 64
Query 58 CGGTTGAGATGTTTCTACGAGCAATCGGACGGCCATTAATGGCTAAAGTGAAGCAGACGA 117
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 65 CGGTTGAGATGTTTCTACGGGCAATCGGACGGCCATTATTGGCTAAAGTGAAGCAGACGA 124
Query 118 CGGGGATCGTCGGGCTTGACGTTGTTCCCAACGCGAGAGCGGTGTTGATCGATCTCTATA 177
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 125 CGGGGATCGTCGGGCTTGACGTTGTTCCCAACGCGAGAGCGGTGCTGATCGATCTCTACA 184
Query 178 GCAAAACCCTAAAGGAGATCCAAGCCGTGCCGGAGGATGAAGGATACCGTAAATCGGTTG 237
||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |
Sbjct 185 GCAAAACCCTAAAGGAGATCCAAGCTGTGCCGGAGGATGAAGGGTACCGTAAAGCGGTGG 244
Query 238 AATCATTCACGCGCCACCGTCTCAATGTGTGCAAGGAGGAAGAAGATTGGGAGGTGATTG 297
|||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 245 AATCATTCACGCGCCAACGTCTCAATGTGTGCAAGGAAGAAGAAGATTGGGAGATGATTG 304
Query 298 AGAAGCGGCTTGGTTGTGGTCAAGTCGAAGAGCTTATCGAAGAGGCTCGCGATGAGCTCA 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 AGAAGCGGCTTGGTTGTGGTCAAGTCGAAGAGCTTATCGAAGAGGCTCGCGATGAGCTCA 364
Query 358 CACTCATTGGGAAAATGATTGAGTGGGATCCTTGGGGTGTTCCAGATGACTATGAGTGTG 417
|||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 365 CACTCATTGGGAAAATGATTGAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTG 424
Query 418 AAGTAATTGAGAACGATGCGCCGATTCCCAAGCATGTTCCTCAGCACCGACCTGGTCCTC 477
|||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 425 AAGTGATTGAGAATGATGCGCCGATTCCAAAGCATGTTCCTCAGCACCGACCTGGTCCTC 484
Query 478 TTCCTGAAG-AGTTCTACAAAACGCTTGAAGGTCTACTTGCAGAGTCTAAAACAGAGATC 536
||||||| | ||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 485 TTCCTGA-GCAGTTCTATAAAACGCTTGAAGGTCTAATTGCAGAGTCTAAAACAGAGATC 543
Query 537 CCGGCGGCTAGCTCC-AGCGATCCGCAGTTGAAGGAGTAACTTCCAGTTTT-ATATATTG 594
|| || |||| | || ||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 544 CCAGCTGCTA-CACCCAGCGATCCGCAGTTGAAGGAGTAACTTCCAGTTTTTACATATTG 602
Query 595 TGTGCTTGTTGCTTTTTTGGGCTAGAGTTGTTTCCGAGTCAGTGGTCA-GCCTCTGAATA 653
|||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||
Sbjct 603 TGTGCTTGTTGCTTTTTTGG-CTAGAGTTGTTTCCGAATCAGTGGTCAAGCCTCTGAATA 661
Query 654 AAATGCTTAATAATTTTCAAAAC-ATAACAATGTC-GTTTCACAAATGTTTTATCATTCT 711
|| |||||||||||||||| ||| ||||||||||| ||| |||||||||||||||| |||
Sbjct 662 AATTGCTTAATAATTTTCATAACGATAACAATGTCTGTT-CACAAATGTTTTATCACTCT 720
Query 712 TATTAAACAAATGATGTTTCTTCCCTTTTGCAAGAACATACGCCATTCTTAAAGACATGT 771
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 721 TATTAAACAAATGATGTTTCTTCCCTTTTGCAAGAACATTCGCCATTCTTAAAGATATGA 780
Query 772 ACCTGATTCCCATC 785
||||||||||||||
Sbjct 781 ACCTGATTCCCATC 794
> AT5G52850.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:21414935-21417616 REVERSE LENGTH=2682
Length=2682
Score = 117 bits (63), Expect = 2e-25
Identities = 69/72 (96%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 714 TTAAACAAATGATGTTTCTTCCCTTTTGCAAGAACATACGCCATTCTTAAAGACATGTAC 773
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||
Sbjct 2682 TTAAACAAATGATGTTTCTTCCCTTTTGCAAGAACATTCGCCATTCTTAAAGATATGAAC 2623
Query 774 CTGATTCCCATC 785
||||||||||||
Sbjct 2622 CTGATTCCCATC 2611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38177951720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5