BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495349
Length=2637
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52850.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 3971 0.0
AT5G52840.1 | Symbols: | NADH-ubiquinone oxidoreductase-relate... 89.8 1e-16
> AT5G52850.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:21414935-21417616 REVERSE LENGTH=2682
Length=2682
Score = 3971 bits (2150), Expect = 0.0
Identities = 2445/2589 (94%), Gaps = 13/2589 (1%)
Strand=Plus/Plus
Query 1 ATGGCGACCAAAGTAG--CCA-CAACAGCATCTACATTTCTCTCTCGCACTAACGAATTG 57
||| ||| |||||||| || || |||| ||| ||||||||||||||||||||||||||
Sbjct 1 ATGACGAGCAAAGTAGTAGCAGCAGCAGCTTCTGCATTTCTCTCTCGCACTAACGAATTG 60
Query 58 AGTAATCTTCAACAATCATGTATTCGGATTCTCTCCTTTTGCGAATCGAGTTCATCGCGC 117
||||||||||| ||||||||||||||||||||||||| |||||||||| |||||| ||
Sbjct 61 GGTAATCTTCAAAAATCATGTATTCGGATTCTCTCCTTCTGCGAATCGAATTCATCACGT 120
Query 118 ATTGGTTTACACATTCATTGCCCTGTAATCAAGTTTGGTCTTTTAGAGAATCTCGACTTA 177
|||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 121 ATTGGTTTACACATCCACTGCCCAGTAATAAAGTTTGGTCTTTTAGAGAATCTCGACTTA 180
Query 178 TGCAACAATCTTTTGAGTCTTTACTTAAAAACCGATGGTATATGGAATGCACGTAAGCTG 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 TGCAACAATCTTTTGAGTCTTTACTTAAAAACCGATGGTATATGGAATGCACGTAAACTG 240
Query 238 TTCGATGAAATGCCGCAAAGAACTGTTTTTGCATGGACAGTTATGATCTCTGCTTTTACC 297
|||||||||||| | || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 TTCGATGAAATGTCTCACAGAACTGTTTTCGCATGGACAGTTATGATCTCTGCTTTTACC 300
Query 298 AAGAGCCAGGAGTTTGCGTCAGCGCTTTCGTTGTTTGAGGAAATGATGGCTTCGGGAATA 357
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 AAGAGCCAAGAGTTTGCATCAGCGCTTTCGTTGTTTGAGGAAATGATGGCTTCGGGAACA 360
Query 358 CACCCGAACGAATTCACATTTTCCTCGGTGATCAGATCTTGTGCTGGTTTAGGAGATCTC 417
||||||||||||||||| |||||||||||| | |||||||||||||||||| ||||| |
Sbjct 361 CACCCGAACGAATTCACTTTTTCCTCGGTGGTAAGATCTTGTGCTGGTTTAAGAGATATT 420
Query 418 AGTTACGGAGGTCGAGTTCATGGTTCTGTTTTAAAGACTGGGTTTGAGGGGAACTCAGTT 477
||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||
Sbjct 421 AGTTACGGAGGTCGAGTTCATGGCTCTGTTATAAAGACTGGGTTTGAGGGAAACTCAGTT 480
Query 478 GTTGGAAGCAGCTTGACTGATTTGTATTCTAAGTGTGGGAAGCTTAAGGAAGCTCGTGAA 537
|||||||||||||||| |||||||||||||||||||||| || ||||||||||| ||||
Sbjct 481 GTTGGAAGCAGCTTGAGTGATTTGTATTCTAAGTGTGGGCAGTTTAAGGAAGCTTGTGAG 540
Query 538 CTGTTTAGTTCTCTTCAGAAGGCGGATACCATCTCGTGGACGATGATGATATCTTCTTTA 597
|| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 541 CTATTTAGTTCTCTTCAGAACGCGGATACTATCTCGTGGACGATGATGATATCTTCTTTA 600
Query 598 GTGGGAGCTCGTAAATGGAGTGAAGCGTTGCGGTTTTACTCTGAGATGATTAAAGCCGGT 657
|||||||||||||||||||| |||||||||| |||||||||||||||| ||||||| |||
Sbjct 601 GTGGGAGCTCGTAAATGGAGAGAAGCGTTGCAGTTTTACTCTGAGATGGTTAAAGCTGGT 660
Query 658 GTTCCTCCTAACGAGTTCACGTTTGTTAAGCTTTTAGGTGCCTCTTCCTTTCTCGGTTTG 717
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTTCCTCCTAACGAGTTCACATTTGTTAAGCTTTTAGGTGCCTCTTCCTTTCTCGGTTTG 720
Query 718 GAGTTTGGTAAAACGATTCATAGCAACATAATTGTCCGGGGAATTCCGCTGAATGTGGTA 777
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 721 GAGTTTGGTAAAACGATTCATAGCAACATAATTGTCAGGGGAATTCCGCTGAATGTGGTA 780
Query 778 TTGAAGACATCTCTCGTTGATTTCTACTCGCATTTTTCTATAATGGAAGATGCTGTGAGG 837
|||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||
Sbjct 781 TTGAAGACATCTCTCGTTGATTTCTACTCGCAGTTTTCTAAAATGGAGGATGCTGTGAGG 840
Query 838 GTGTTGAATTCGACTGGAGAACAGGATGTGTTTCTTTGGACGTCTGTGGTATCAGGGTTT 897
||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 841 GTGTTGAATTCGAGTGGAGAACAAGACGTGTTTCTTTGGACGTCTGTGGTATCAGGGTTT 900
Query 898 GTAAGGAACTTGAGAGCCAAGGAAGCTGTTGGAACGTTTCTTGAGATGCGAAGTTTGGGT 957
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 901 GTAAGGAACTTGAGAGCCAAGGAAGCTGTTGGCACGTTTCTTGAGATGCGAAGTTTGGGT 960
Query 958 TTGCAACCAAATAACTTCACATACTCTGCAATCTTGAGCTTGTGTTCTGCTGTTCGTTCG 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TTGCAACCAAATAACTTCACATACTCTGCAATCTTGAGCTTGTGTTCTGCTGTTCGTTCG 1020
Query 1018 CTGGATTTCGGCAAACAGATTCACTCACAGACAATTAAGGTTGGCTTTGAGGACAGCACT 1077
|||||||| || ||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1021 CTGGATTTTGGGAAACAGATTCACTCACAGACAATTAAGGTTGGCTTCGAGGATAGCACT 1080
Query 1078 GATGTCGGAAATGCACTTGTA-AGTATGTATATGAAGTGTTCGGCATCAGAAGTAGAAGC 1136
||||| ||||||||||||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 1081 GATGTTGGAAATGCACTTGTAGA-TATGTATATGAAGTGCTCGGCATCAGAAGTAGAAGC 1139
Query 1137 TTCGAGAGTCTTTGGAGCAATGATCTCACCAAACGTCGTCTCTTGGACAACGTTAATCTT 1196
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1140 TTCGAGAGTCTTTGGAGCAATGGTTTCACCAAACGTCGTCTCTTGGACAACGTTAATCTT 1199
Query 1197 AGGTCTTGTTGATCATGGGTTCGAGCAAGATTGTTTTGGACTGTTGATGGAGATGGTAAA 1256
||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1200 AGGTCTTGTTGATCACGGGTTCGTGCAAGATTGTTTTGGACTGCTGATGGAGATGGTAAA 1259
Query 1257 ACGAGAGGTAGAACCCAATTTTGTTACTCTATCTGGTGTTCTCCGAGCCTGTAGCAAATT 1316
||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1260 ACGAGAGGTAGAACCCAATGTTGTTACCCTATCCGGTGTTCTCCGAGCCTGTAGCAAATT 1319
Query 1317 GAAATATGTAAGGCTGGTATTAGAGATTCATGGATATCTACTCAGAAGACACGTAGATGG 1376
|| | ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1320 GAGACATGTAAGGCGGGTATTAGAGATTCATGCATATCTACTCAGAAGACACGTAGATGG 1379
Query 1377 TGAAATGATAGTAGGGAATTCACTTGTCGATGCTTATGCCAGCTCG-GGTAAGGTGGATT 1435
||||||| ||||||||||||||||||||||||| |||||||||||| || ||||||||||
Sbjct 1380 TGAAATGGTAGTAGGGAATTCACTTGTCGATGCATATGCCAGCTCGAGG-AAGGTGGATT 1438
Query 1436 ATGCCTGGAATGTGACTAGGTCGATGGACATGAGGGATAATATCACATACACGAGCTTGG 1495
||||||||||||||| |||||||||| | | |||||||||||||||||||||||||||||
Sbjct 1439 ATGCCTGGAATGTGATTAGGTCGATGAAAAGGAGGGATAATATCACATACACGAGCTTGG 1498
Query 1496 TAACAAGATTTAATGAGTTGGGCAAGCATGAAATGGCACTGAGTGTCATCAATCATATGT 1555
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1499 TAACAAGGTTTAATGAGTTGGGCAAGCATGAAATGGCACTGAGTGTCATCAATTATATGT 1558
Query 1556 ATGGTGATGGAATCAGAATGGATCAGTTAAGCTTACCCGGGTTTATCTCAGCTTCAGCCA 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 ATGGTGATGGAATCAGAATGGATCAGTTAAGCTTACCCGGGTTTATCTCAGCTTCAGCCA 1618
Query 1616 ACTTGGGCGCTCATGAAACTGGGAAACATCTTCATTGTTACTCCGTGAAATCCGGGTTTT 1675
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 ACTTGGGCGCTCTTGAAACTGGGAAACATCTTCATTGTTACTCCGTGAAATCCGGGTTTT 1678
Query 1676 CTGGTGCGGTTTCGGTTTTAAATAGTCTCGTTGACATGTACAGTAAATGTGGTAGCTTGG 1735
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1679 CTGGTGCGGCTTCGGTTTTAAATAGTCTCGTTGACATGTATAGTAAATGTGGTAGCTTGG 1738
Query 1736 AAGATGCAAAGAAAGTTTTTGAAGAAATAGCTATGCCTGATGTGGTTTCTTGGAACGGGT 1795
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1739 AAGATGCAAAGAAAGTTTTTGAAGAAATAGCTACGCCTGATGTGGTTTCTTGGAACGGGT 1798
Query 1796 TGGTATCTGGTTTGGCATCAAACGGTCGTATTTCATCTGCTCTATCTGCATTTGAGGAGA 1855
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1799 TGGTATCTGGTTTGGCATCAAACGGTTTTATTTCATCTGCTCTATCTGCATTTGAGGAGA 1858
Query 1856 TGCGGATGAAAGGAACCGAGCCCGATTCAGTAACGTTCCTGATATTGCTCTCTGCTTGTA 1915
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 TGAGGATGAAAGAAACCGAGCCCGATTCAGTAACGTTCCTGATATTGCTCTCTGCTTGTA 1918
Query 1916 GTAAGGGAAGATTGACCGAGATGGGTCTCGAGTATTTCCAA-TCAATGAAAACGATTCAT 1974
|||| ||||||||||| || |||| || |||||||||||| | |||||||| |||| ||
Sbjct 1919 GTAATGGAAGATTGACTGACTTGGGCCTTGAGTATTTCCAAGT-AATGAAAAAGATTTAT 1977
Query 1975 AATATGGAGCCACAGATAGAGCACTATGTTCATCTAGTTGGTATCTTAGGTCGTGCTGGA 2034
|| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1978 AACATTGAGCCACAGGTAGAGCACTATGTTCATCTAGTTGGTATCTTAGGTCGTGCTGGA 2037
Query 2035 AGGCTAGAGGAAGCAACAGGAGTTGTAGAGACAATGCATTTAAAACCAAATGCTATGATC 2094
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2038 CGGCTAGAGGAAGCAACAGGAGTTGTAGAGACAATGCATTTAAAACCAAATGCTATGATC 2097
Query 2095 TTCAAAACACTGTTGAGAGCTTGCAGATACCATGGAAATCTGTCTTTAGGAGAAGATATG 2154
|||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 2098 TTCAAAACGTTGTTGAGAGCTTGTAGATACCGTGGAAATCTGTCTTTAGGAGAAGATATG 2157
Query 2155 GCTAACAAAGGCTTAGCACTTGCACCATCTGATCCAGCTTTCTACATTCTCTTGGCTGAC 2214
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 2158 GCTAACAAAGGCTTAGCACTTGCACCATCTGATCCAGCCTTGTACATTCTTTTGGCTGAC 2217
Query 2215 TTATATGACGAATCTGGAAAACCAGAGTTGGCCCAAAAGACTCGAAATTTGATGAGTGAG 2274
|||| ||||||||||||||||||||||| || |||||||||||||||||||||| ||||
Sbjct 2218 CTATACGACGAATCTGGAAAACCAGAGTTAGCTCAAAAGACTCGAAATTTGATGACTGAG 2277
Query 2275 AAGGGTTTGTGTAAGAAGCTAAGCAAGAGCACTGTGGAGGTTCAAGGAAAAGTTCACAGC 2334
||| | ||| |||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2278 AAGCGCTTGAGTAAAAAGCTAGGCAAGAGCACTGTGGAGGTTCAAGGAAAAGTTCACAGC 2337
Query 2335 TTTGTCGGTGAGGATGTTACTACAGTGGAGAGAACGAA-GAGGATCTATGCAGAGATAGA 2393
|||||| ||||||||||||||| |||||| | |||||| | |||| || |||||||||||
Sbjct 2338 TTTGTCAGTGAGGATGTTACTAGAGTGGATAAAACGAATG-GGATTTACGCAGAGATAGA 2396
Query 2394 ATCGATAAAGGAAGAGATCAAAAAGTTTGGTTC-CTCATACCGAGGTAATGAAAACGCAA 2452
||||||||||||||||||||||| ||||||||| | ||||| ||||||||||||||||||
Sbjct 2397 ATCGATAAAGGAAGAGATCAAAAGGTTTGGTTCAC-CATACAGAGGTAATGAAAACGCAA 2455
Query 2453 GCTTTCACAGTGCAAAACAAGCTGTTGTGTATGGTTTTATCTATGCGTCACCACAAGCTC 2512
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 2456 GCTTTCACAGTGCAAAACAAGCTGTTGTGTATGGTTTTATCTATGCGTCACCAGAAGCCC 2515
Query 2513 CGGTTCATGTTGTTAAGAACAAAATCCTGTGTAAGGATTGCCATGATTTCGTGTCCATCT 2572
||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 2516 CGGTTCATGTTGTTAAGAACAAAATTCTGTGTAAGGACTGCCATGAGTTCGTGTCCATCT 2575
Query 2573 TGACCCGGT 2581
|||| ||||
Sbjct 2576 TGACTCGGT 2584
Score = 89.8 bits (48), Expect = 1e-16
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 2579 GGTACATGTCTTTAAGAATGGCGTATGTTCTTGCAAAAGGGAAGAAACATCATTTGT 2635
||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2622 GGTTCATATCTTTAAGAATGGCGAATGTTCTTGCAAAAGGGAAGAAACATCATTTGT 2678
> AT5G52840.1 | Symbols: | NADH-ubiquinone oxidoreductase-related
| chr5:21413646-21415006 FORWARD LENGTH=794
Length=794
Score = 89.8 bits (48), Expect = 1e-16
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 2579 GGTACATGTCTTTAAGAATGGCGTATGTTCTTGCAAAAGGGAAGAAACATCATTTGT 2635
||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 783 GGTTCATATCTTTAAGAATGGCGAATGTTCTTGCAAAAGGGAAGAAACATCATTTGT 727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130935721230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5