BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495349 Length=2637 Score E Sequences producing significant alignments: (Bits) Value AT5G52850.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 3971 0.0 AT5G52840.1 | Symbols: | NADH-ubiquinone oxidoreductase-relate... 89.8 1e-16 > AT5G52850.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:21414935-21417616 REVERSE LENGTH=2682 Length=2682 Score = 3971 bits (2150), Expect = 0.0 Identities = 2445/2589 (94%), Gaps = 13/2589 (1%) Strand=Plus/Plus Query 1 ATGGCGACCAAAGTAG--CCA-CAACAGCATCTACATTTCTCTCTCGCACTAACGAATTG 57 ||| ||| |||||||| || || |||| ||| |||||||||||||||||||||||||| Sbjct 1 ATGACGAGCAAAGTAGTAGCAGCAGCAGCTTCTGCATTTCTCTCTCGCACTAACGAATTG 60 Query 58 AGTAATCTTCAACAATCATGTATTCGGATTCTCTCCTTTTGCGAATCGAGTTCATCGCGC 117 ||||||||||| ||||||||||||||||||||||||| |||||||||| |||||| || Sbjct 61 GGTAATCTTCAAAAATCATGTATTCGGATTCTCTCCTTCTGCGAATCGAATTCATCACGT 120 Query 118 ATTGGTTTACACATTCATTGCCCTGTAATCAAGTTTGGTCTTTTAGAGAATCTCGACTTA 177 |||||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||| Sbjct 121 ATTGGTTTACACATCCACTGCCCAGTAATAAAGTTTGGTCTTTTAGAGAATCTCGACTTA 180 Query 178 TGCAACAATCTTTTGAGTCTTTACTTAAAAACCGATGGTATATGGAATGCACGTAAGCTG 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 181 TGCAACAATCTTTTGAGTCTTTACTTAAAAACCGATGGTATATGGAATGCACGTAAACTG 240 Query 238 TTCGATGAAATGCCGCAAAGAACTGTTTTTGCATGGACAGTTATGATCTCTGCTTTTACC 297 |||||||||||| | || ||||||||||| |||||||||||||||||||||||||||||| Sbjct 241 TTCGATGAAATGTCTCACAGAACTGTTTTCGCATGGACAGTTATGATCTCTGCTTTTACC 300 Query 298 AAGAGCCAGGAGTTTGCGTCAGCGCTTTCGTTGTTTGAGGAAATGATGGCTTCGGGAATA 357 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 301 AAGAGCCAAGAGTTTGCATCAGCGCTTTCGTTGTTTGAGGAAATGATGGCTTCGGGAACA 360 Query 358 CACCCGAACGAATTCACATTTTCCTCGGTGATCAGATCTTGTGCTGGTTTAGGAGATCTC 417 ||||||||||||||||| |||||||||||| | |||||||||||||||||| ||||| | Sbjct 361 CACCCGAACGAATTCACTTTTTCCTCGGTGGTAAGATCTTGTGCTGGTTTAAGAGATATT 420 Query 418 AGTTACGGAGGTCGAGTTCATGGTTCTGTTTTAAAGACTGGGTTTGAGGGGAACTCAGTT 477 ||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||| Sbjct 421 AGTTACGGAGGTCGAGTTCATGGCTCTGTTATAAAGACTGGGTTTGAGGGAAACTCAGTT 480 Query 478 GTTGGAAGCAGCTTGACTGATTTGTATTCTAAGTGTGGGAAGCTTAAGGAAGCTCGTGAA 537 |||||||||||||||| |||||||||||||||||||||| || ||||||||||| |||| Sbjct 481 GTTGGAAGCAGCTTGAGTGATTTGTATTCTAAGTGTGGGCAGTTTAAGGAAGCTTGTGAG 540 Query 538 CTGTTTAGTTCTCTTCAGAAGGCGGATACCATCTCGTGGACGATGATGATATCTTCTTTA 597 || ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 541 CTATTTAGTTCTCTTCAGAACGCGGATACTATCTCGTGGACGATGATGATATCTTCTTTA 600 Query 598 GTGGGAGCTCGTAAATGGAGTGAAGCGTTGCGGTTTTACTCTGAGATGATTAAAGCCGGT 657 |||||||||||||||||||| |||||||||| |||||||||||||||| ||||||| ||| Sbjct 601 GTGGGAGCTCGTAAATGGAGAGAAGCGTTGCAGTTTTACTCTGAGATGGTTAAAGCTGGT 660 Query 658 GTTCCTCCTAACGAGTTCACGTTTGTTAAGCTTTTAGGTGCCTCTTCCTTTCTCGGTTTG 717 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 661 GTTCCTCCTAACGAGTTCACATTTGTTAAGCTTTTAGGTGCCTCTTCCTTTCTCGGTTTG 720 Query 718 GAGTTTGGTAAAACGATTCATAGCAACATAATTGTCCGGGGAATTCCGCTGAATGTGGTA 777 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 721 GAGTTTGGTAAAACGATTCATAGCAACATAATTGTCAGGGGAATTCCGCTGAATGTGGTA 780 Query 778 TTGAAGACATCTCTCGTTGATTTCTACTCGCATTTTTCTATAATGGAAGATGCTGTGAGG 837 |||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||| Sbjct 781 TTGAAGACATCTCTCGTTGATTTCTACTCGCAGTTTTCTAAAATGGAGGATGCTGTGAGG 840 Query 838 GTGTTGAATTCGACTGGAGAACAGGATGTGTTTCTTTGGACGTCTGTGGTATCAGGGTTT 897 ||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 841 GTGTTGAATTCGAGTGGAGAACAAGACGTGTTTCTTTGGACGTCTGTGGTATCAGGGTTT 900 Query 898 GTAAGGAACTTGAGAGCCAAGGAAGCTGTTGGAACGTTTCTTGAGATGCGAAGTTTGGGT 957 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 901 GTAAGGAACTTGAGAGCCAAGGAAGCTGTTGGCACGTTTCTTGAGATGCGAAGTTTGGGT 960 Query 958 TTGCAACCAAATAACTTCACATACTCTGCAATCTTGAGCTTGTGTTCTGCTGTTCGTTCG 1017 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 TTGCAACCAAATAACTTCACATACTCTGCAATCTTGAGCTTGTGTTCTGCTGTTCGTTCG 1020 Query 1018 CTGGATTTCGGCAAACAGATTCACTCACAGACAATTAAGGTTGGCTTTGAGGACAGCACT 1077 |||||||| || ||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 1021 CTGGATTTTGGGAAACAGATTCACTCACAGACAATTAAGGTTGGCTTCGAGGATAGCACT 1080 Query 1078 GATGTCGGAAATGCACTTGTA-AGTATGTATATGAAGTGTTCGGCATCAGAAGTAGAAGC 1136 ||||| ||||||||||||||| | ||||||||||||||| |||||||||||||||||||| Sbjct 1081 GATGTTGGAAATGCACTTGTAGA-TATGTATATGAAGTGCTCGGCATCAGAAGTAGAAGC 1139 Query 1137 TTCGAGAGTCTTTGGAGCAATGATCTCACCAAACGTCGTCTCTTGGACAACGTTAATCTT 1196 |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 1140 TTCGAGAGTCTTTGGAGCAATGGTTTCACCAAACGTCGTCTCTTGGACAACGTTAATCTT 1199 Query 1197 AGGTCTTGTTGATCATGGGTTCGAGCAAGATTGTTTTGGACTGTTGATGGAGATGGTAAA 1256 ||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||| Sbjct 1200 AGGTCTTGTTGATCACGGGTTCGTGCAAGATTGTTTTGGACTGCTGATGGAGATGGTAAA 1259 Query 1257 ACGAGAGGTAGAACCCAATTTTGTTACTCTATCTGGTGTTCTCCGAGCCTGTAGCAAATT 1316 ||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| Sbjct 1260 ACGAGAGGTAGAACCCAATGTTGTTACCCTATCCGGTGTTCTCCGAGCCTGTAGCAAATT 1319 Query 1317 GAAATATGTAAGGCTGGTATTAGAGATTCATGGATATCTACTCAGAAGACACGTAGATGG 1376 || | ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1320 GAGACATGTAAGGCGGGTATTAGAGATTCATGCATATCTACTCAGAAGACACGTAGATGG 1379 Query 1377 TGAAATGATAGTAGGGAATTCACTTGTCGATGCTTATGCCAGCTCG-GGTAAGGTGGATT 1435 ||||||| ||||||||||||||||||||||||| |||||||||||| || |||||||||| Sbjct 1380 TGAAATGGTAGTAGGGAATTCACTTGTCGATGCATATGCCAGCTCGAGG-AAGGTGGATT 1438 Query 1436 ATGCCTGGAATGTGACTAGGTCGATGGACATGAGGGATAATATCACATACACGAGCTTGG 1495 ||||||||||||||| |||||||||| | | ||||||||||||||||||||||||||||| Sbjct 1439 ATGCCTGGAATGTGATTAGGTCGATGAAAAGGAGGGATAATATCACATACACGAGCTTGG 1498 Query 1496 TAACAAGATTTAATGAGTTGGGCAAGCATGAAATGGCACTGAGTGTCATCAATCATATGT 1555 ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1499 TAACAAGGTTTAATGAGTTGGGCAAGCATGAAATGGCACTGAGTGTCATCAATTATATGT 1558 Query 1556 ATGGTGATGGAATCAGAATGGATCAGTTAAGCTTACCCGGGTTTATCTCAGCTTCAGCCA 1615 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1559 ATGGTGATGGAATCAGAATGGATCAGTTAAGCTTACCCGGGTTTATCTCAGCTTCAGCCA 1618 Query 1616 ACTTGGGCGCTCATGAAACTGGGAAACATCTTCATTGTTACTCCGTGAAATCCGGGTTTT 1675 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1619 ACTTGGGCGCTCTTGAAACTGGGAAACATCTTCATTGTTACTCCGTGAAATCCGGGTTTT 1678 Query 1676 CTGGTGCGGTTTCGGTTTTAAATAGTCTCGTTGACATGTACAGTAAATGTGGTAGCTTGG 1735 ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1679 CTGGTGCGGCTTCGGTTTTAAATAGTCTCGTTGACATGTATAGTAAATGTGGTAGCTTGG 1738 Query 1736 AAGATGCAAAGAAAGTTTTTGAAGAAATAGCTATGCCTGATGTGGTTTCTTGGAACGGGT 1795 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1739 AAGATGCAAAGAAAGTTTTTGAAGAAATAGCTACGCCTGATGTGGTTTCTTGGAACGGGT 1798 Query 1796 TGGTATCTGGTTTGGCATCAAACGGTCGTATTTCATCTGCTCTATCTGCATTTGAGGAGA 1855 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1799 TGGTATCTGGTTTGGCATCAAACGGTTTTATTTCATCTGCTCTATCTGCATTTGAGGAGA 1858 Query 1856 TGCGGATGAAAGGAACCGAGCCCGATTCAGTAACGTTCCTGATATTGCTCTCTGCTTGTA 1915 || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1859 TGAGGATGAAAGAAACCGAGCCCGATTCAGTAACGTTCCTGATATTGCTCTCTGCTTGTA 1918 Query 1916 GTAAGGGAAGATTGACCGAGATGGGTCTCGAGTATTTCCAA-TCAATGAAAACGATTCAT 1974 |||| ||||||||||| || |||| || |||||||||||| | |||||||| |||| || Sbjct 1919 GTAATGGAAGATTGACTGACTTGGGCCTTGAGTATTTCCAAGT-AATGAAAAAGATTTAT 1977 Query 1975 AATATGGAGCCACAGATAGAGCACTATGTTCATCTAGTTGGTATCTTAGGTCGTGCTGGA 2034 || || ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1978 AACATTGAGCCACAGGTAGAGCACTATGTTCATCTAGTTGGTATCTTAGGTCGTGCTGGA 2037 Query 2035 AGGCTAGAGGAAGCAACAGGAGTTGTAGAGACAATGCATTTAAAACCAAATGCTATGATC 2094 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2038 CGGCTAGAGGAAGCAACAGGAGTTGTAGAGACAATGCATTTAAAACCAAATGCTATGATC 2097 Query 2095 TTCAAAACACTGTTGAGAGCTTGCAGATACCATGGAAATCTGTCTTTAGGAGAAGATATG 2154 |||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 2098 TTCAAAACGTTGTTGAGAGCTTGTAGATACCGTGGAAATCTGTCTTTAGGAGAAGATATG 2157 Query 2155 GCTAACAAAGGCTTAGCACTTGCACCATCTGATCCAGCTTTCTACATTCTCTTGGCTGAC 2214 |||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||| Sbjct 2158 GCTAACAAAGGCTTAGCACTTGCACCATCTGATCCAGCCTTGTACATTCTTTTGGCTGAC 2217 Query 2215 TTATATGACGAATCTGGAAAACCAGAGTTGGCCCAAAAGACTCGAAATTTGATGAGTGAG 2274 |||| ||||||||||||||||||||||| || |||||||||||||||||||||| |||| Sbjct 2218 CTATACGACGAATCTGGAAAACCAGAGTTAGCTCAAAAGACTCGAAATTTGATGACTGAG 2277 Query 2275 AAGGGTTTGTGTAAGAAGCTAAGCAAGAGCACTGTGGAGGTTCAAGGAAAAGTTCACAGC 2334 ||| | ||| |||| |||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2278 AAGCGCTTGAGTAAAAAGCTAGGCAAGAGCACTGTGGAGGTTCAAGGAAAAGTTCACAGC 2337 Query 2335 TTTGTCGGTGAGGATGTTACTACAGTGGAGAGAACGAA-GAGGATCTATGCAGAGATAGA 2393 |||||| ||||||||||||||| |||||| | |||||| | |||| || ||||||||||| Sbjct 2338 TTTGTCAGTGAGGATGTTACTAGAGTGGATAAAACGAATG-GGATTTACGCAGAGATAGA 2396 Query 2394 ATCGATAAAGGAAGAGATCAAAAAGTTTGGTTC-CTCATACCGAGGTAATGAAAACGCAA 2452 ||||||||||||||||||||||| ||||||||| | ||||| |||||||||||||||||| Sbjct 2397 ATCGATAAAGGAAGAGATCAAAAGGTTTGGTTCAC-CATACAGAGGTAATGAAAACGCAA 2455 Query 2453 GCTTTCACAGTGCAAAACAAGCTGTTGTGTATGGTTTTATCTATGCGTCACCACAAGCTC 2512 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 2456 GCTTTCACAGTGCAAAACAAGCTGTTGTGTATGGTTTTATCTATGCGTCACCAGAAGCCC 2515 Query 2513 CGGTTCATGTTGTTAAGAACAAAATCCTGTGTAAGGATTGCCATGATTTCGTGTCCATCT 2572 ||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| Sbjct 2516 CGGTTCATGTTGTTAAGAACAAAATTCTGTGTAAGGACTGCCATGAGTTCGTGTCCATCT 2575 Query 2573 TGACCCGGT 2581 |||| |||| Sbjct 2576 TGACTCGGT 2584 Score = 89.8 bits (48), Expect = 1e-16 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2579 GGTACATGTCTTTAAGAATGGCGTATGTTCTTGCAAAAGGGAAGAAACATCATTTGT 2635 ||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2622 GGTTCATATCTTTAAGAATGGCGAATGTTCTTGCAAAAGGGAAGAAACATCATTTGT 2678 > AT5G52840.1 | Symbols: | NADH-ubiquinone oxidoreductase-related | chr5:21413646-21415006 FORWARD LENGTH=794 Length=794 Score = 89.8 bits (48), Expect = 1e-16 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2579 GGTACATGTCTTTAAGAATGGCGTATGTTCTTGCAAAAGGGAAGAAACATCATTTGT 2635 ||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 783 GGTTCATATCTTTAAGAATGGCGAATGTTCTTGCAAAAGGGAAGAAACATCATTTGT 727 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 130935721230 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5