BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495362
Length=847
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52970.1 | Symbols: | thylakoid lumen 15.0 kDa protein | ch... 1166 0.0
> AT5G52970.1 | Symbols: | thylakoid lumen 15.0 kDa protein |
chr5:21479599-21481226 FORWARD LENGTH=901
Length=901
Score = 1166 bits (631), Expect = 0.0
Identities = 807/885 (91%), Gaps = 40/885 (5%)
Strand=Plus/Plus
Query 1 GTCATGGCGATGCTCTTTCTACCTCCTCCTACGCAATGTAGAAGCTTCTCTCCTTCTGTC 60
|||||||||||||| |||| |||||||||| | |||||||||||||||||||||| ||||
Sbjct 19 GTCATGGCGATGCTTTTTCGACCTCCTCCTTCACAATGTAGAAGCTTCTCTCCTTTTGTC 78
Query 61 TTCAACCACATCTCCAGAGAAATTTCATCGTC-TCT--TCTCTCCTTGAAAACCTCCGGC 117
|||||| ||| |||||||||| |||| ||||| ||| ||||||||||||||||||||||
Sbjct 79 TTCAACTACAGCTCCAGAGAAGTTTCTTCGTCGTCTCGTCTCTCCTTGAAAACCTCCGGC 138
Query 118 GACGAAGAAAACTGGGTTTCACGTTTCCGGTCAAAATCTCTCAGTTTGGTGTTCTCTGGA 177
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 139 GACGAAGAAAACTGGGTTTCACGTTTCCGGTCGAAATCTCTCAGTTTGGTGTTCTCTGGA 198
Query 178 GCCCTCGCTCTCGGTTTATCTCTATCGGGCGTTGGATTTGCAGAGGCAAAAGTTGGTGTC 237
|| || |||||||||||||||||||| ||||| || |||||||| ||||||||||||||
Sbjct 199 GCTCTTGCTCTCGGTTTATCTCTATCAGGCGTGGGGTTTGCAGATGCAAAAGTTGGTGTT 258
Query 238 AACAAACCAGAATTG-TTACCTAAAGAGTTCACTTCTGTCATAGATGTTGCTGGTTTCCT 296
||||||||||||||| || |||||||||||||||||||| ||||||||||||| ||||||
Sbjct 259 AACAAACCAGAATTGCTT-CCTAAAGAGTTCACTTCTGTTATAGATGTTGCTGATTTCCT 317
Query 297 CTCTAATGGTCAGGAGAAAAGGATTGCTCAAGAAATCGCTAATCTTGAGAAAGATACAGG 356
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 318 CTCTAATGGTCAGGAGAAGAGAATTGCTCAAGAAATCGCTAATCTTGAGAAAGATACAGG 377
Query 357 ATTCAAGTTGAGAGTCTTGGCCCAAAACTATCCCGTTACACCC-GGACTAGCAATCAAAG 415
||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||
Sbjct 378 ATTCAAGTTGAGAGTCTTGGCTCAAAACTATCCCGTTAC-CCCTGGACTAGCAATCAAAG 436
Query 416 ATTTCTGGCAGGTGGATGATAGCACAATTGTGTTTGTCGCTGACCCGACATTTGGGAACA 475
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 437 ATTTCTGGCAGGTGGATGATAGCACAATTGTGTTTGTCGCTGACCCGACTTTTGGGAACA 496
Query 476 TATTGAATTTCAATGTTGGGGCTACAGTTGATTTAGACATACCTCGTAGTTTCTGGAGTC 535
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 497 TATTGAATTTCAATGTTGGAGCTACGGTTGATTTAGACATACCTCGTAGTTTCTGGAGTC 556
Query 536 GATTGGCTGGGAAATACGGCAACATGTTTTACTGGAAAGAGAAGGGAGAAGATGCATCCA 595
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 557 GACTGGCTGGGAAATACGGCAATATGTTTTACTGGAAAGAGAAGGGAGAAGATGCATCTA 616
Query 596 TTGAAGCTGCAGTGATGGCGATATCAAGTTGCTTACGAGAACCAGTTGGTCCAAATAACT 655
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 617 TTGAAGCTGCAGTGATGGCGATATCAAGTTGCTTACGAGAACCAGTTGGTCGAAACAACT 676
Query 656 GTGCAGAGATCCAATGAAGTATATGACCCC--CATT-GTATA-G--ATTGGCATCA-A-- 706
|||||||||||||||||||||||||||||| || ||||| | ||| ||| | |
Sbjct 677 GTGCAGAGATCCAATGAAGTATATGACCCCATCAAGCGTATATGTTATTATCATAATATC 736
Query 707 A--G-A--GAT----AC-A--GA-AT------TT-GTAAGAATGAATCCACGTCT--T-G 743
| | | ||| || | || || || |||||||||||||||||||| | |
Sbjct 737 ATTGTATAGATTGGCACCAAAGAGATACAGAATTTGTAAGAATGAATCCACGTCTAGTAG 796
Query 744 TAACCTCTCTCCATTTCTCAGCTTCACCTCCTTAAACAAACAGTTTCAATTGGT-ACTTG 802
||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||
Sbjct 797 TAACCTCTCTCCATTTCTCAGCTTCACCTACTCAAACAAACAGTTTCAATTGGTTACTTG 856
Query 803 TATCTCTTAAAACAAACAAATAGAGAAACCAAAATCAATAAACTG 847
||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 857 TATCTTTTAAAACAAACAAATAGAGAAACCAAAATCAATAAACTG 901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41292468834
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5