BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495363
Length=740
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52980.1 | Symbols: | CONTAINS InterPro DOMAIN/s: ATPase, v... 1075 0.0
> AT5G52980.1 | Symbols: | CONTAINS InterPro DOMAIN/s: ATPase,
vacuolar ER assembly factor, Vma12 (InterPro:IPR021013); Has
1807 Blast hits to 1807 proteins in 277 species: Archae -
0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses
- 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:21482160-21483722
REVERSE LENGTH=918
Length=918
Score = 1075 bits (582), Expect = 0.0
Identities = 651/685 (95%), Gaps = 2/685 (0%)
Strand=Plus/Plus
Query 1 AAAACATCGCGGAAAACCGACCCGCCTGATCAACGTCAAGTGTTAGGACCCGATCAAATA 60
||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||| |
Sbjct 22 AAAACATCGCGGAGAACCGACCCGCCTGAACAACGTCAAGTGTTTGGACCCGATCAAAGA 81
Query 61 TGGATCAACCCGACCCGAAAAATGGCGCTGGTCTGATTCTCTCCGCCACTGAACCGATAC 120
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 82 TGGATCAACCCGACCCGAAAAATGGCTCTGGTCTGATTCTCTCCGCCACTGAACCGCTGC 141
Query 121 GGTCGTTTCTCGCCCTCGCCTCCGGTGATCATCGTCTCTCCGAAGAACTCAGAGAAATTG 180
| ||||||||||| |||||||||||||||| |||||||||||| || ||||||| |||||
Sbjct 142 GATCGTTTCTCGCTCTCGCCTCCGGTGATCGTCGTCTCTCCGACGAGCTCAGAGGAATTG 201
Query 181 CTACCGATCTTCGCTCGAAGAACACCGTTCCGTACAAATTGCTTCGCGCTCTATGGACCG 240
|| ||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||
Sbjct 202 CTTCCGATCTTCGCTCGAAGAACACCATTCCGTACAAATTGCTCCGCGCTATATGGACCG 261
Query 241 GATCCGATCCATCGACCAGACCGGATTTGTTGGGACTTTTCTCCGGCTCCGATTTCGTCT 300
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 262 GATCCGATCCGTCGACCAGACCGGATTTGTTGGGACTTTTCTCCGGCTCCAATTTCGTCT 321
Query 301 TCACCAGTCCCAAACCCAGAGAAAAGAGCGAAGAACTGAAATTGAGATT-GCTAAATCTC 359
||||||||||||||||||||||||||||||||||||||||| ||||||| | | || |||
Sbjct 322 TCACCAGTCCCAAACCCAGAGAAAAGAGCGAAGAACTGAAACTGAGATTAG-TGAAGCTC 380
Query 360 AGAGAAATAGCAGAGAGGAAGGAGTATGCTGAGCTTGTTAAAGATATAACACCCAAGAAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 381 AGAGAAATAGCAGAGAGGAAGGAGTATGCTGAGCTTGTTAAAGATATAACACCAAAGAAA 440
Query 420 CAAGTCGAGGAGCCTTTCTCGTCTTACAAAGACCAGCTCGGTTTCGGTTTACATGTTGGT 479
|||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 441 CAAGTCGAAGAGCCTTTCTCTTCTTACAAAGACCAGCTCGGTTTTGGTTTACATGTTGGT 500
Query 480 CTTACCATGTTCACTGGATATTTGGTTGGATACGCTTCTTTTAGAGCTTTATTTAACCGC 539
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 501 CTTACCATGTTCACTGGATATTTGGTTGGATACGCTTCCTTCAGAGCTTTATTCAACCGC 560
Query 540 AACCCCGCTCTGAGTGCTGCTGGTGGGATTCTTGGACTAGTTTTGGCGATGCTTGTGGAA 599
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 561 AACCCCGCTCTGAGTGCTGCTGGTGGGATTCTTGGACTAGTTCTGGCGATGCTTGTGGAA 620
Query 600 ACGCTTCTGTTTATAATCAAAACTTCTAAAGATGATCAGATTCAGAGCTCTAAATCGTTC 659
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 621 ACGCTTCTATTTATAATCAAAACGTCTAAAGATGATCAGATTCAGAGCTCTAAATCGTTC 680
Query 660 ACTCAGAGCTCTCCATCGTTCACTC 684
|||||||||||||||||||||||||
Sbjct 681 ACTCAGAGCTCTCCATCGTTCACTC 705
Score = 141 bits (76), Expect = 9e-33
Identities = 85/89 (96%), Gaps = 2/89 (2%)
Strand=Plus/Plus
Query 653 ATCGTTCACTCAGAGCTCTCCATCGTTCACTCCCACTACTAAGAAGAATCAATAGAA-TT 711
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 695 ATCGTTCACTCAGAGCTCTCCATCGTTCACTCCCACTACTAAGAAAAATCAATAGAACTT 754
Query 712 TGGTTTGCATTCTCTTCCTACTGAGAAAA 740
|| |||||||||| |||||||||||||||
Sbjct 755 TG-TTTGCATTCTTTTCCTACTGAGAAAA 782
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35917415105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5