BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495365
Length=1238
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52990.1 | Symbols: | SNARE-like superfamily protein | chr5... 1504 0.0
> AT5G52990.1 | Symbols: | SNARE-like superfamily protein | chr5:21483928-21485287
FORWARD LENGTH=1360
Length=1360
Score = 1504 bits (814), Expect = 0.0
Identities = 921/971 (95%), Gaps = 14/971 (1%)
Strand=Plus/Plus
Query 161 TTTT-GCTTCGAATCTCCATTGAAAAGGATGATTTCAAATCCAAGTTTATTGTCTTACAC 219
|||| |||||| ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 234 TTTTCGCTTCG-ATCTCCATTGAAAAGGATGATTTCAAATCCAAGTTTATTATCGTACAC 292
Query 220 TTGCATTGCGAAAGGAACCGTAGTTCTCGCTGAGTTCGTTTCCAAGG-AAGAGCCAGGAA 278
|||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||
Sbjct 293 TTGCATTGCGAAAGGAACCGTAGTTCTCGCGGAGTTCGTTT-CAAGGCAAGAGCCAGGAA 351
Query 279 TCGAAGCTGTAGCTTTACGATGTATCGAGAACACGCCTCCACATCATTCAATGTTCTCTC 338
|||||||| ||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 352 TCGAAGCTATAGCTTTACGATGCATCGAGAACACGCCTCCTCATCATTCAATGTTTTCTC 411
Query 339 ATACAGTTCACAAGAAGAGGTACACATTCGCAATCGATGATGATTCGTTTGTTTATTTCG 398
|||||||||||||||||| ||| |||||||||||||| |||||||| ||||||||||||
Sbjct 412 ATACAGTTCACAAGAAGACGTATACATTCGCAATCGACGATGATTCCTTTGTTTATTTCT 471
Query 399 CGATTT-TGGATGAAAGTATGGAGAAACCTGAATCATTCTGGGTTTTGAATCGTCTGAGA 457
|||||| | |||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 472 CGATTTCT-GATGAATCCATGGAGAAACCTGAATCATTCTGGGTTTTGAATCGTTTGAGA 530
Query 458 TCAGCTATTGAAGATCTGATTAGAGACGGTGGATCTGATGTTGAAACGTTGATTAATCCG 517
|||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||
Sbjct 531 TCAGCTATTGAAGATCTGATTAAAGACGGTGGATCTGATGTTGAGACGCTGATTAATCCT 590
Query 518 GTTTCGCACTGTCTTCAATTGAAGATTGATCCAATTTTCGCTGAGATTGTTGGTGTTGTT 577
||||| || ||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 591 GTTTCTCATTGTCTTCAATTGAAGCTTGATCCAGTTTTCGCTGAGATTGTTGGTGTTGTT 650
Query 578 GATTTGG-A--ATTGGATATGGATTTGGTTGGATCACCGAGGAGTGTAGCGAGAGAGAGT 634
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 GATTTGGAATTATTGGATATGGATTTGGTTGGATCACCGAGGAGTGTAGCGAGAGAGAGT 710
Query 635 CGGAATCCGAGTATTGATTCGTCTAAAGGAAGAAGAGCTGCTTTGATGCCACTTTTGGGG 694
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 711 CGAAATCCGAGTATTGATTCATCTAAAGGAAGAAGAGCTGCTTTGATGCCACTTTTGGGG 770
Query 695 AAGCCATTGAAGGCGTTGAAGAAGAAGAAGAGATTGCATAATGAAGCAAAAGGAGAAGAT 754
|| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 771 AAACCATTGAAGGCGTTGAAGAAGAAGAAGAGATTGCATAATGAAGCAAAAGGGGGAGAT 830
Query 755 TCTTGTGAGGTTGGTTCGATTCAGGAGATATCAGAGAAGAATGTTGATTTATGTGGGAAT 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 TCTTGTGAGGTTGGTTCGATTCAGGAGATATCAGAGAAGAATGTTGATTTATGTGGGAAT 890
Query 815 GGTAACAATGGAGTCTTACGCAAGGAACTGAGAAATGGTTTGTTGAGTGATCATCATCAT 874
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 GGTAATAATGGAGTCTTACGCAAGGAACTGAGAAATGGTTTGTTGAGTGATCATCATCAT 950
Query 875 AGACAAAAGGCGAAACAGATATGGAAGAAACATGTTTGGGTTGTGTTGATGTTTGATTTC 934
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 951 AGACAAAAGGCGAAACAGATTTGGAAGAAACATGTTTGGGTTGTGTTGATGTTTGATTTC 1010
Query 935 TGCATCTGTGCTGTTTTATTTGGAATCTGGCTTTGGATTTGTGAAGGGTTTCAGTGCATT 994
||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1011 TGCATCTGTGCTGTTTTGTTTGGAATTTGGCTTTGGATTTGTGAAGGGTTTCAATGCATT 1070
Query 995 CAAGGGTAAAAGTTATCATCATCTGTGTACATCTCCAAATTCATATTGTTTGAATCTGCA 1054
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1071 CAAGGGTAAAAGTTATCATCATCTGTGTACATCTCCAAATTCATATTCTTTGAATCTGCA 1130
Query 1055 TCAAAATTTGATCATT-GACATCTTCTTTTTTCTGGGTATTCGTTTTTT-GGATCAAATC 1112
|||||||||||||||| |||||||| |||| |||||||| |||||||| ||||||||||
Sbjct 1131 TCAAAATTTGATCATTTGACATCTT-TTTT--CTGGGTATCCGTTTTTTTGGATCAAATC 1187
Query 1113 TGATCCCtttt 1123
|||||||||||
Sbjct 1188 TGATCCCTTTT 1198
Score = 122 bits (66), Expect = 6e-27
Identities = 85/94 (90%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 1 TTTCGTCTTCTCCAATAATGCTCTCCATTTCTGTTATTTTCCCTAGAAAAATCCGCAAAC 60
|||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||
Sbjct 1 TTTCGTCTTCTCCAATAATGATCTCCATTTCTGTTATTTTCCCTAGAAATTTTCGCAAAC 60
Query 61 CCTagagagagagagaAA--TCAAAATCTCCATT 92
|||| | ||||||||||| | ||||||||||||
Sbjct 61 CCTAAAAAGAGAGAGAAACATAAAAATCTCCATT 94
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60843060540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5