BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495371
Length=1568
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53050.2 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1943 0.0
AT5G53048.1 | Symbols: | other RNA | chr5:21509861-21511850 FO... 254 2e-66
> AT5G53050.2 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:21510129-21513576 REVERSE LENGTH=1661
Length=1661
Score = 1943 bits (1052), Expect = 0.0
Identities = 1168/1226 (95%), Gaps = 0/1226 (0%)
Strand=Plus/Plus
Query 1 CGATGCCGTTTTGCGAGGTCGTGAAAGAAGACGTCGGCCCAGAGACGACTCTTAACAATG 60
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 143 CGATGCCGTTTTGCGAGGTCGTGAAAGAAGATGTCGGCCCAGAGACGACGCTTAACAATG 202
Query 61 CCGCAATCAAAATCTTCTACAGAACCTACGGTCATGGTCCTATCAAAGCTCTTCTCATCA 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 203 CCGCAATCAAAATCTTCTACAGAACGTACGGTCATGGTCCTATCAAAGCTCTTCTCATCA 262
Query 121 TAGGTTTAGCAGGAACCCATGAGTCCTGGGGTCCTCAAATCATGGGATTGACGGGGACGG 180
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 263 TAGGTTTAGCCGGAACCCATGAGTCATGGGGTCCTCAAATCATGGGATTGACGGGAACGG 322
Query 181 ATAAACCCAACGACGACGATGAAGACGACGGAGGAATTGTTTCCGATGGTTCTGGTATCG 240
|||||||||||||||| ||||| ||||||||||||||||||||||||| ||| || ||||
Sbjct 323 ATAAACCCAACGACGATGATGACGACGACGGAGGAATTGTTTCCGATGATTCCGGCATCG 382
Query 241 AGGTTTGCGCTTTCGATAATCGTGGGATGGGTCGGAGCTCTGTGCCTACCCACAAATCCG 300
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 383 AGGTTTGCGCTTTCGATAATCGTGGTATGGGTCGAAGCTCTGTGCCTACCCACAAATCTG 442
Query 301 AGTACACAACAACGATAATGGCAAATGATTCAATTAGTTTGTTGGATCATTTGGGTTGGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 AGTACACAACAACGATAATGGCAAATGATTCAATTAGTTTGTTGGATCATTTGGGTTGGA 502
Query 361 AGAGAGCTCACATAATTGGCCATTCTATGGGAGCTATGATAGCTTGCAAGTTAGCTGCAA 420
||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 503 AGAAAGCTCACATAATTGGTCATTCTATGGGAGCAATGATAGCTTGCAAGTTAGCTGCAA 562
Query 421 TGGTGCCCGAACGGGTTCTTTCGTTGGCGTTGCTTAACGTTACAGGTGGAGGGTTCGAAT 480
||| ||| |||||||||||||| |||||||||||||| |||||||||||||| || ||||
Sbjct 563 TGGCGCCTGAACGGGTTCTTTCTTTGGCGTTGCTTAATGTTACAGGTGGAGGTTTTGAAT 622
Query 481 GTTTCCCCAAGCTTGACCGGCAATCGCTTTCCATTGCGATACGTTTTCTGAAGGCAAAGA 540
| ||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 623 GCTTCCCTAAGCTTGACCGGAAATCGCTTTCCATTGCGATACGTTTTCTGAAAGCAAAGA 682
Query 541 CCCCTGAACAAAGGGCAGCTGTTGATTTGGACACACATTATTCAAAGGATTACTTAGAAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 683 CCCCTGAACAAAGGGCAGCTGTTGATTTGGACACACATTATTCAAAGGATTACCTAGAAG 742
Query 601 AATCTGTAGGAACTAACACAAGACGGGCAATTTTATATCAGCAATATGTGAAAGGAATAT 660
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 743 AATCTGTAGGAACTAATACAAGACGGGCAATTTTATATCAGCAATATGTAAAAGGAATAT 802
Query 661 CAGAAACTGGAATGCAGTCCAAGTACGGGTTTGATGGCCAAATTAACGCTTGTTGGTTAC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 CAGAAACTGGAATGCAGTCCAAGTACGGGTTTGATGGCCAAATTAACGCTTGTTGGTTAC 862
Query 721 ACAAAATCACAAAACCAGAGATCGAAGTAATCCGCTCGGCTGGATTTCTTGTCTCAGTCA 780
|||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 863 ACAAAATCACAAAAGTAGAGATTGAACTAATCCGCTCGGCTGGATTTCTTGTCTCAGTCA 922
Query 781 TTCATGGAAGACATGATGTGATTGCTCAGATATGTTACGCAAGAAGACTGGCACAGAGGC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 TTCATGGAAGACATGATGTGATTGCTCAGATATGTTACGCAAGAAGACTGGCACAGAGGC 982
Query 841 TATATCCCGTCGCTAGAATGGTAGATCTTCATGGAGGTCATCTTGTAAGCCATGAGAGGA 900
||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 983 TATATCCAGTCGCTAGAATGGTGGATCTTCATGGAGGTCATCTTGTAAGCCACGAGAGAA 1042
Query 901 CAGAAGAGGTTAATAAAGCTCTTCTCGAGTTAATCAAGGCGTCAGAAATGAAGAAAAGAC 960
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1043 CAGAAGAGGTTAATAAAGCTCTGCTCGAGTTAATCAAGGCGTCAGAAATGAAGAAAATAT 1102
Query 961 CAACTGATTGGACTAACCTCACCATGGAAACACCCGGTTATCTCAAGAGGAGACTAGCAT 1020
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||
Sbjct 1103 CAACTGATTGGACTAACCTCACCATGGAAACACCTGGTTATTTCAAGAGGAGACTAACAT 1162
Query 1021 TGATTACAAGCTCATCAGAAGGCAAGAATGCCGTCTCTCCCGCACATTTTATAGCGGAAA 1080
|||||| ||||||| | ||||||||||||| || |||||| |||||||| ||||||||||
Sbjct 1163 TGATTAGAAGCTCAACGGAAGGCAAGAATGTCGCCTCTCCTGCACATTTCATAGCGGAAA 1222
Query 1081 AGTTCCATCGCTTTCTACTTTTCCTCTTCGGACTTCTGGTTTTGGCATTTGAGTATTCAA 1140
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1223 AGTTCCATGGCTTTCTACTTTTCCTCTTCGGGCTTCTGGTTTTGGCATTTGAGTATTCAA 1282
Query 1141 GAAGAGCATTCAGGGCTGTAAAACCCGTCAAAGTTGGACCTTGTCTCACATAACAACAAC 1200
||||||| |||||||||||||| ||||||||||||||||||| ||| |||||||||||||
Sbjct 1283 GAAGAGCTTTCAGGGCTGTAAACCCCGTCAAAGTTGGACCTTCTCTAACATAACAACAAC 1342
Query 1201 CCTTCACATTTCAATTTGTCGACCAA 1226
||||||||| ||||||||||||||||
Sbjct 1343 CCTTCACATATCAATTTGTCGACCAA 1368
Score = 141 bits (76), Expect = 2e-32
Identities = 91/98 (93%), Gaps = 1/98 (1%)
Strand=Plus/Plus
Query 1447 TCCATGACAAACATTTGTTCTACGAATGTAATATGTAAAGATAAGACATCGAAATCTCAA 1506
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1544 TCCATGTCAAACATTTGTTCTACGAACATAATATGTAAAGATAAGACATCGAAATCTCAA 1603
Query 1507 -TATAGACTTGTATGTTTTCGTGTACCTATAGAACATA 1543
|||||||| ||||||||| |||||||||| |||||||
Sbjct 1604 ATATAGACTCGTATGTTTTTGTGTACCTATGGAACATA 1641
> AT5G53048.1 | Symbols: | other RNA | chr5:21509861-21511850
FORWARD LENGTH=936
Length=936
Score = 254 bits (137), Expect = 2e-66
Identities = 150/156 (96%), Gaps = 1/156 (1%)
Strand=Plus/Minus
Query 635 ATATCAGCAATATGTGAAAGGAATATCAGAAACTGGAATGCAGTCCAAGTACGGGTTTGA 694
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 ATA-CAGCAATATGTAAAAGGAATATCAGAAACTGGAATGCAGTCCAAGTACGGGTTTGA 852
Query 695 TGGCCAAATTAACGCTTGTTGGTTACACAAAATCACAAAACCAGAGATCGAAGTAATCCG 754
|||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||
Sbjct 851 TGGCCAAATTAACGCTTGTTGGTTACACAAAATCACAAAAGTAGAGATTGAACTAATCCG 792
Query 755 CTCGGCTGGATTTCTTGTCTCAGTCATTCATGGAAG 790
||||||||||||||||||||||||||||||||||||
Sbjct 791 CTCGGCTGGATTTCTTGTCTCAGTCATTCATGGAAG 756
Score = 241 bits (130), Expect = 2e-62
Identities = 152/163 (93%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 1019 ATTGATTACAAGCTCATCAGAAGGCAAGAATGCCGTCTCTCCCGCACATTTTATAGCGGA 1078
|||||||| ||||||| | ||||||||||||| || |||||| |||||||| ||||||||
Sbjct 223 ATTGATTAGAAGCTCAACGGAAGGCAAGAATGTCGCCTCTCCTGCACATTTCATAGCGGA 164
Query 1079 AAAGTTCCATCGCTTTCTACTTTTCCTCTTCGGACTTCTGGTTTTGGCATTTGAGTATTC 1138
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 163 AAAGTTCCATGGCTTTCTACTTTTCCTCTTCGGGCTTCTGGTTTTGGCATTTGAGTATTC 104
Query 1139 AAGAAGAGCATTCAGGGCTGTAAAACCCGTCAAAGTTGGACCT 1181
||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 103 AAGAAGAGCTTTCAGGGCTGTAAACCCCGTCAAAGTTGGACCT 61
Score = 204 bits (110), Expect = 3e-51
Identities = 118/122 (97%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 789 AGACATGATGTGATTGCTCAGATATGTTACGCAAGAAGACTGGCACAGAGGCTATATCCC 848
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 AGACATGATGTGATTGCTCAGATATGTTACGCAAGAAGACTGGCACAGAGGCTATATCCA 572
Query 849 GTCGCTAGAATGGTAGATCTTCATGGAGGTCATCTTGTAAGCCATGAGAGGACAGAAGAG 908
|||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 571 GTCGCTAGAATGGTGGATCTTCATGGAGGTCATCTTGTAAGCCACGAGAGAACAGAAGAG 512
Query 909 GT 910
||
Sbjct 511 GT 510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77409240390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5