BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495374
Length=2419
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53060.1 | Symbols: | RNA-binding KH domain-containing prot... 3696 0.0
> AT5G53060.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:21515026-21518437 FORWARD LENGTH=2528
Length=2528
Score = 3696 bits (2001), Expect = 0.0
Identities = 2302/2441 (94%), Gaps = 45/2441 (2%)
Strand=Plus/Plus
Query 1 TTTTTGCATTGCACCGATTCACCTCCATCGATTTTGGATATT-TTCGAATTCACCCTCCA 59
|||||||||||||||||||| ||||||||||||||||| ||| || |||||| |||||||
Sbjct 63 TTTTTGCATTGCACCGATTCGCCTCCATCGATTTTGGACATTCTT-GAATTCTCCCTCCA 121
Query 60 AGAT-TTCCCT-TGAAATTGACTGGAAAGTTTCTTCCTTTTTCGATTTCCGGTAAAAAGG 117
|| | || ||| |||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 122 AG-TATT-CCTGTGAAATTGACCGGAAAGTTCCTTCCTTTTTCAATTTCCGGTAAAAAGG 179
Query 118 AAAGTAATTGGGCACTGTAGACTTCCTTCTAGGGTCTTTGTGAACTTTCTAATCCTTTAG 177
|||||||||||| ||||||||||||||||||||| | |||||||||||||||||||| ||
Sbjct 180 AAAGTAATTGGGTACTGTAGACTTCCTTCTAGGG-C-TTGTGAACTTTCTAATCCTTCAG 237
Query 178 AAAAACCCTCGAATTCGAAAATTTTGCGGCGAGATTGATAAATGACTAGTT-AAGA-TTG 235
|||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| |||
Sbjct 238 -AAAACCCTCGAATTCGAAAAATTTGCTGCGAGATTGATAAATGACTAGTTAAAGATTTG 296
Query 236 AACTTTGATTTCTGGGTTTGCG-----------ATGGAGAGATCTAGATCGAAGAGAAAC 284
|||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 297 AACTTTGATTTCTGGGTTTGCGATTTTATTCAAATGGAGAGATCTAGATCCAAGAGAAAC 356
Query 285 TACCACTATGACCAAGACTATGATGGAGATTCTATGCCCAGGTCTAAACCTCGCTACAAC 344
||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 357 TACCACTATGACCAAGACTATGACGGAGATTCCATGCCTAGGTCTAAACCTCGCTACAAC 416
Query 345 AATAATTACCACTTTGGTGGCGGCGGAGGAGGAGGAAATAACAGATACCGTGGCGGCggt 404
|||||||||||||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct 417 AATAATTACCACTTTGGTGGTGGC---GGCGGAGGAAATAACAGATACCGTGGCGGCGGC 473
Query 405 ggtggtggtggtggAAATGGCCGGCCATCGAAGTCTCACCCTGAAACGATGGCAACGACG 464
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 474 GGTGGTGGAGGTGGAAATGGCCGGCCATCGAAGTCTCATCCTGAAACGATGGCAACAACG 533
Query 465 ACTTATCGAATCCTCTGTCATGACGCTAAAGCAGGAGGCGTCATTGGTAAATCCGGGACA 524
|||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 534 ACTTATCGAATCCTCTGTCACGACGCTAAAGCAGGAGGTGTTATTGGTAAATCCGGGACA 593
Query 525 ATCATCAAATCGATTAGGCAACACACCGGCGCGTGGATTAACGTGCATGAGCTAGTTCCT 584
|| |||||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 594 ATTATCAAATCTATAAGGCAACACACCGGCGCGTGGATTAACGTGCACGAGCTAGTTCCT 653
Query 585 GGAGACGCAGAGCGTATCATTGAGATTTCTGACAATCGTAGGCGTGACCCTGATGGGAGA 644
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 654 GGAGATGCAGAGCGTATCATTGAGATTTCTGATAATCGTAGGCGTGACCCTGATGGGAGA 713
Query 645 ATGCCGTCATTCTCTCCTGCTCAAGAGGCTTTGTTTAGTGTTCATGACAGGATTTTGGAG 704
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 ATGCCGTCTTTCTCTCCTGCTCAAGAGGCTTTGTTTAGTGTTCATGACAGGATTTTGGAG 773
Query 705 AGTGAACCTCAGTTTGGGTATGGTGGAGCACAGCCGGAAGAGGAGGAGGATTACGGTGGA 764
|||||| |||||||||| ||||||||| | | ||||||||||||||||||||||||||||
Sbjct 774 AGTGAAGCTCAGTTTGGTTATGGTGGACCTCCGCCGGAAGAGGAGGAGGATTACGGTGGA 833
Query 765 GTTAGACCTGGTGGAGGGAGAGTTGTGACTAGGTTAGTGGTTTCTAGGATGCATGTTGGT 824
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 834 GTTAGACCTGGTGGAGGGAGAGTTGTGACTAGATTAGTGGTTTCTAGGATGCATGTTGGT 893
Query 825 TGTTTGTTGGGTAAAGGTGGGAAGATTATTGAGCAGATGAGGATTGAAACTAAGACTCAT 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 TGTTTGTTGGGTAAAGGTGGGAAGATTATTGAGCAGATGAGGATTGAAACTAAGACTCAT 953
Query 885 ATTCGGATTCTGCCACGGGAAAGTAACTTACCTCGTTGTGTTTCACTCTCTGAAGAGATT 944
||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 ATTCGGATTCTTCCAAGAGAAAGTAACTTACCTCGTTGTGTTTCACTCTCTGAAGAGATT 1013
Query 945 GTTCAGATTGTAGGTGAACTTAGTGCAGTGAAAAACGCTTTA-CTCATTGTATCATCGCG 1003
|||||||||||||||||||| | ||||||||||||||||||| | |||||||||||| ||
Sbjct 1014 GTTCAGATTGTAGGTGAACTAAATGCAGTGAAAAACGCTTTAGC-CATTGTATCATCTCG 1072
Query 1004 TCTAAGGGAGAGTCAACATCGTGATCGGAGTAATTTCCAAGGGCGTTCACATTCACCAGA 1063
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 TCTAAGGGAGAGTCAGCATCGTGATCGGAGTAATTTCCAAGGGCGTTCACATTCACCAGA 1132
Query 1064 GCGG-CAGTTTGCAGCTGCTGGGGATGATTACATCCCACAG---AGAAGACAATCATCAG 1119
||| | |||||||||||| |||||||||||||| |||||| |||||||||||||| |
Sbjct 1133 ACGGTC-GTTTGCAGCTGCGGGGGATGATTACATGCCACAGCTAAGAAGACAATCATCCG 1191
Query 1120 ATAGGTTTCCTCGTGGTAATTATAGAAATAACAACTTCAGTTCTCGCCAATCCAACTATG 1179
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1192 ATAGGTTTCCTCGTGGTAATTTTAGAAATAACAACTTCAGTTCTCGCCAGTCCAACTATG 1251
Query 1180 CTGAAGAAGCTCCAGCAGTTCCAGTTGGTGAGAATGTCTACACCGAAGAGCTTGTGTTCC 1239
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1252 CAGAAGAAGCTCCAGCAGTTCCAGTTGGTGAGAATGTCTACTCCGAAGAGCTTGTGTTCC 1311
Query 1240 AGATTCTCTGCCCAGCTGACAAGATTGTTCGGGTTATTGGGGAATCGCAAGGAAT-ATTA 1298
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1312 AGATTCTCTGCCCAGCTGACAAGATTGTTCGGGTTGTTGGGGAATCGCAAGGAATAATT- 1370
Query 1299 GATTTGCTTCAAAATGAGATTGGCGTGGACGTGAGAGTATCTGACCCAGTTGCTGGATCT 1358
||||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1371 GATTTGCTTCAGAACGAGATCGGCGTGGACGTTAGAGTATCTGACCCAGTTGCTGGATCT 1430
Query 1359 GATGAACAGATAATCACCATTTCTTCGGAAGAGGCTCCTGATGATCCATTTTTCCCTGCT 1418
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1431 GATGAACAGATAATCACCATTTCTTCGGAAGAGGCACCTGATGATCCATTTTTCCCTGCT 1490
Query 1419 CAAGAAGCCTTGTTGCACATTCAAACTCAGATCATAGATCTTATTCCGGATAAAGATAAT 1478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 CAAGAAGCCTTGTTGCACATTCAAACTCAGATCATAGATCTTATTCCGGATAAAGATAAT 1550
Query 1479 TTAATAACAACGAGATTACTTGTCTCATCTAGAGACTCCGTATGTTTGGAAGGGAAAGCA 1538
||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1551 TTAATAACAACAAGATTACTTGTCCCATCTAGAGACTCTATATGTTTGGAAGGGAAAGCA 1610
Query 1539 GGATCAGTATCTGAGATATCACGATTAACTGGAACAAGCGTACAAATTCTAGCTAGGGAA 1598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 GGATCAGTATCTGAGATATCACGATTAACTGGAACAAGCGTACAAATTCTAGCTAGGGAA 1670
Query 1599 GAAATTCCCCGATGTGCTTCTATCAATAATGTTGTTATACAGATTACTGGCGATATCAGA 1658
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1671 GAAATTCCCCGATGTGCTTCTATCAATGATGTTGTTATACAGATTACTGGCGAGATCAGA 1730
Query 1659 GCAGCTCGGGATGCACTTGTTGAATTAACGTTACTATTGAGGAGTCATATGTTCAAGGAG 1718
|| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1731 GCTGCTCGGGAAGCACTTGTTGAATTAACATTACTATTGAGGAGTCATATGTTCAAGGAG 1790
Query 1719 CTCTCTCAAAAGGAGACACCACCAGCTTCCACATCCACAACTGGCCCTCTTGAAGGTGTT 1778
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1791 CTCTCTCAAAAGGAGACACCACCAGCTTCCACATCCACAACTGGCCCTCTCGAAGGTGTT 1850
Query 1779 GCAGGAGTAATGGAGGTAGCTTCATCAAATAACACAATTCAATCCCGTGAAGGTCTTACT 1838
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1851 GCAGGAGTAATGGAGGTAGCTTCATCAAATAACACAATTCAATCTCGTGAAGGTCCTACT 1910
Query 1839 GGTTTGAATCTGAACTTGCAGCAAGCTAGCACAATCTTGCCACAGTTTAAGGAAGGTTTT 1898
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1911 AGTTCGAATCTGAACTTGCAGCAAGTTAGCACAATCTTGCCACAGTTTAAGGAAGGTTTC 1970
Query 1899 GGATCAGTTGCAAAGGCGGGTGAAAGTGAACACCGGGAGGAGGTTCCTGTCACGACAAGC 1958
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1971 GGATCAGTTGCAAAGGCGGGTGAAAGTGAACACCGGGAAGAGGTTCCTGTCACGACAAGC 2030
Query 1959 AGAATGGCAGTGCCACTTGTTACTAGGAGCACTCTTGAAGTTGTCTTACCAGAGGCTGTT 2018
|||||||| || |||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 2031 AGAATGGCGGTACCACTTGTTACTAGAAGCACTCTTGAAGTTGTCTTACCAGAGGCGGTT 2090
Query 2019 GTTCCTAAGCTTGTTACGAAATCAAGAAACAAGCTTGCACAAATCAGTGAGTGGTCTGGA 2078
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2091 GTTCCTAAGCTCGTTACGAAATCAAGAAACAAGCTTGCACAAATCAGTGAGTGGTCTGGA 2150
Query 2079 GCTAGTGTAACCTTAGTTGAAGACCGACCAGAAGAAACACAGAATATCATTCGAATTTCG 2138
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2151 GCTAGTGTAACCATAGTTGAAGACAGACCAGAAGAAACACAGAATATCATTCGAATTTCG 2210
Query 2139 GGTACACCCGAGCAGGCAGAGAGAGCACAGAGCTTGCTTCAAGGCTTCATCTTGAGCATA 2198
|||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 2211 GGTACACCCGAGCAAGCAGAGAGAGCTCAGAGTTTGCTTCAAGGCTTCATTTTGAGCATA 2270
Query 2199 CAAGAAGATGGACCGTGAACTTGGACCAGATCACCGGTCAACACAGAGAAGAAGATCAAG 2258
||||| ||||||||||||||||||||||||||| | ||||||||||||| ||||||||||
Sbjct 2271 CAAGAGGATGGACCGTGAACTTGGACCAGATCATCAGTCAACACAGAGATGAAGATCAAG 2330
Query 2259 AAACTGAGAAATGTGGAGTTATGTATGAATTGTTGAATATTAGGATTTAAGTGGGCAGTA 2318
|||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||
Sbjct 2331 AAACTGAGAAATGTGGAGTTATGTATGACTTGTTGAATATTAGGATTTCAGTAAGCAGTA 2390
Query 2319 GTAGTTTTAGATGAACATTCTACATTTTGACCATCACTCTTTGGTTTCTACTTTCTATGT 2378
|| || |||||||||||| ||||||||||||||||||||||||||||| | ||
Sbjct 2391 GT--TT--AGATGAACATTCCACATTTTGACCATCACTCTTTGGTTTCTA-T------GT 2439
Query 2379 TGTCTATTAGTCTTCTTTGTTTACATTGTTCTGTAACTTAT 2419
|||||||||||||||||||||||||||||||||||||||||
Sbjct 2440 TGTCTATTAGTCTTCTTTGTTTACATTGTTCTGTAACTTAT 2480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120129904185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5