BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495375
Length=1861
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53080.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2649 0.0
> AT5G53080.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:21520513-21523266 FORWARD LENGTH=1914
Length=1914
Score = 2649 bits (1434), Expect = 0.0
Identities = 1716/1848 (93%), Gaps = 36/1848 (2%)
Strand=Plus/Plus
Query 27 GTCGGCGGAACCGCGGCCACGAGAACGAAGAGCTTTTCACACTACCTCCGATGGTGTtct 86
||||||| || ||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 64 GTCGGCGAAATTGCGGCCACGAGAACGAAGAGC--TTCACACTACCTCCAATGGTGTTCT 121
Query 87 ctatctctctcctctctTCGACCACTTCGCTCACCACATGGGCGAATCAATTAAGCTCTC 146
||| ||||||||||||||||||||||||||| ||||||||||| ||||||| ||| ||||
Sbjct 122 CTAACTCTCTCCTCTCTTCGACCACTTCGCTTACCACATGGGCAAATCAATCAAGTTCTC 181
Query 147 AGTCTGGTAGTGCACCGAGAGATTCGACATGGCAATATGGTGTTTGTTTCCGTAATCAGA 206
|||| || | | |||||| |||||||||||| | | |||||||||| ||||||||||
Sbjct 182 AGTCAAGTCTTTCCCCGAGATATTCGACATGGC-A-GT-GTGTTTGTTTACGTAATCAGA 238
Query 207 AACGCAAACCTAAGCTCTACTTGATTCCCGCCCGCCATTTTTTATCGACTCCTATTGAGT 266
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 239 AACGCAAACCTAAGCTCTACTTGATTCCCGCTCGCCATTTTTTATCGACTCCAATTGATT 298
Query 267 CAG--T-CACCTCCTC-AGAAAGTGCTTCA-GTTCATGCTACTTCTGGCGTTTCTGAAGT 321
||| | | ||||||| | || | |||||| ||| |||||||||||||||||||||||||
Sbjct 299 CAGTCTCCTCCTCCTCAATAACG-GCTTCACGTT-ATGCTACTTCTGGCGTTTCTGAAGT 356
Query 322 TCAAAGGTCTACTTCAAGCAACAATGTTAATGAGATGGAAGAGTTTGAGATGGAGTTGCA 381
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 357 TCAAAGGTCTACTTCGAGCAACAATGTTACTGAGATGGAAGAGTTTGAGATGGAGTTGCA 416
Query 382 AGAGTTGTTTAATGAAGTC-AAGGCTATGGTGAAGATTGGCAAGGAAAGAGACGCAATGG 440
||||||||||||||||||| || | ||||||||||||||| |||||||| ||||||||||
Sbjct 417 AGAGTTGTTTAATGAAGTCAAAAG-TATGGTGAAGATTGGGAAGGAAAGTGACGCAATGG 475
Query 441 ACCTACTTCGAGCGAATTATGTTGCTGTGAAAGAAGAAATGGATTCCGGTTTGAAAGGTA 500
|||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 476 ACCTTCTTCGAGCGAATTATGTTGCTGTGAAAGAAGAGCTGGATTCGGGTTTGAAAGGTA 535
Query 501 TTGAACAAGCTGCTGTACTTGACATCATTGCGTTGGGGTATATGGCTGTTGGAGACTTGA 560
| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 536 TCGAACAAGCTGCTGTTCTTGACATCATTGCTTTGGGGTATATGGCTGTTGGAGACTTGA 595
Query 561 AACCTGTCCCGGCATTGCTTGATATGATAAACAAGATTGTTGATAATTTAAAAGACTCCG 620
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AACCTGTCCCCGCATTGCTTGATATGATAAACAAGATTGTTGATAATTTAAAAGACTCCG 655
Query 621 AGCCTCTTTTGGATTCAGTACTTATGCATGTTGGCAGTATGTATTCGGCAATAGGGAAGT 680
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 656 AACCTCTTTTGGATTCAGTACTTATGCATGTTGGCAGTATGTATTCGGTAATAGGGAAGT 715
Query 681 TTGAAAACGCTATACTCGCGCATCAAAGGGCTGTTCGTATATTAGAGAATAGATACGGTA 740
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||
Sbjct 716 TTGAAAACGCTATACTCGTGCATCAAAGGGCTATTCGTATATTAGAGAATAGATATGGTA 775
Query 741 AAGGCAATACTTTACTTGTCACACCATTACTTGGTTTGGCAAAGAGTTTTGCTTCTGATG 800
|| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 776 AATGCAATACTTTACTTGTCACACCATTACTTGGTATGGCTAAGAGTTTTGCTTCTGATG 835
Query 801 GAAAAGCCACTAAAGCGATTGGTGTTTATGAGCGGACGGTGACTATCTTGGAACGGAATA 860
|||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||
Sbjct 836 GAAAAGCCACTAAAGCGATTGGTGTTTATGAGCGTACGTTGACTATCTTAGAACGGAATA 895
Query 861 GAGGTTCTGAAAGTGAGGATCTAGTGGTGCCGTTATTTTCACTCGGTAAACTTCTGCTCA 920
|||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 896 GAGGTTCTGAGAGTGAGGATCTAGTAGTTCCGTTATTTTCACTCGGTAAACTTCTGCTCA 955
Query 921 AAGAAGGTAAAGCTGCTGAAGCAGAGATTCCTTTTACCAGGATTGTAAATATATACAAGA 980
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 956 AAGAAGGTAAAGCTGCTGAAGCAGAAATTCCTTTTACCAGCATTGTAAATATATACAAGA 1015
Query 981 TGATATACGGAGAGAAAGATGGAAGAGTTGGCATGGCCATGTGTTCCCTTGCTAATGCTA 1040
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AGATATACGGAGAGAGAGATGGAAGAGTTGGCATGGCCATGTGTTCCCTTGCTAATGCTA 1075
Query 1041 AGTGCTCAAAAGGCGATGCAAATGAAGCCGTTGATATCTACAAGAACGCTCTACGAATAA 1100
||||||||||||| |||||||||||||| ||||||||||||| ||| |||||||||||||
Sbjct 1076 AGTGCTCAAAAGGTGATGCAAATGAAGCTGTTGATATCTACAGGAATGCTCTACGAATAA 1135
Query 1101 TCAAAGATTCAA-TG----G-CAATAGACAACAGTATCTTGGAAAACATGAGGATAGATC 1154
||||||| |||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct 1136 TCAAAGACTCAAATTATATGACAATAGACAACAGTATCTTGGAAAACATGAGGATAGATC 1195
Query 1155 TTGCTGAGCTGCTTCATTTTGTTGGAAGGGGAGATGAAGGACGAGAGTTACTAGAAGAAT 1214
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TTGCTGAGCTGCTTCATTTCGTTGGAAGGGGAGATGAAGGACGAGAGTTACTAGAAGAAT 1255
Query 1215 GCCTATTAATAAACGAGAGATTCAAAGGGAAAAACCATCCTAGCATGGCTACACATCTTA 1274
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 GCTTATTAATAAATGAGAGATTCAAAGGGAAAAACCATCCTAGCATGGCTACACATCTTA 1315
Query 1275 TAAACCTTGCAGCATCTTATTCGCGTTCCAAGAATTATGTGGAGGCAGAACGATTACTAA 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1316 TAAACCTTGCAGCATCTTATTCGCGTTCCAAGAATTATGTGGAGGCAGAACGATTGCTAC 1375
Query 1335 GAACTTGTTTGAACATCATGGAGGAATCAGTTGGTTCAGA-GGATCAGTCCATAACCTTT 1393
|||||||||||||||||||||||| ||||||||| ||||| || |||||||||||||||
Sbjct 1376 GAACTTGTTTGAACATCATGGAGGTATCAGTTGGCTCAGAAGG-TCAGTCCATAACCTTC 1434
Query 1394 CCAATGCTAAATCTTGCAGTCACTCTTTCTCAGTTGAATCGTGATGAGGAAGCCGAGCAA 1453
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1435 CCAATGCTAAATCTTGCAGTCACTCTTTCCCAACTGAATCGTGATGAGGAAGCCGAGCAA 1494
Query 1454 GTAGCCTTAAAGGTTCTACACATCCGTGAGAAGGCATTTGGCAAAGACTCTCTCCCTGTT 1513
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1495 ATAGCCTTAAAGGTTCTACGCATCCGTGAGAAGGCATTTGGCGAAGACTCTCTCCCTGTT 1554
Query 1514 GGTGAGGCTCTGGACTGTTTGGTGTCGATCCAAGCGAGATTAGGAAGAGACGATGGAGAA 1573
|| ||||| |||||||||||||| ||||||||||||||| |||||||||| |||||||||
Sbjct 1555 GGAGAGGCGCTGGACTGTTTGGTATCGATCCAAGCGAGACTAGGAAGAGATGATGGAGAA 1614
Query 1574 ATACTGGGATTGCTGAAAAGGGTTATGATGATCCAAGAGAAAGAGTTTGGTTCTTCAGCT 1633
||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1615 ATATTGGGTTTGCTGAAAAGGGTTATGATGATCCAAGAGAAAGAGTTTGGTCCTTCAGCT 1674
Query 1634 CAAGAACTCATTGTTACTCTCCAAAAGATTATTCATTTCTTGGAAAAATTGGAGATGAAA 1693
||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 1675 CAAGAACTCATTGTTACTCTCCAGAAGATCATTCATTTCTTGGAGAAATTGGAGATGAAA 1734
Query 1694 GATGAGAAATTTAAGTTTAGGAGAAGATTAGCTTTGCTTAGAGAGAGATACAAGCAGAAT 1753
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1735 GATGATAAATTTAAGTTTAGGAGAAGATTAGCTTTACTTAGAGAGAGATACAAGCAGAGT 1794
Query 1754 CTTAGCTTCTAGAATATAGTTATCTTACTCTCTTTAGTGTTTCTTGAGTTTTGTCTATTA 1813
||||||| ||||||| | | | || | | ||||||||||| ||||||||| |||
Sbjct 1795 CTTAGCTACTAGAATCT--T-A-CT-A-T------AGTGTTTCTTGCGTTTTGTCTTTTA 1842
Query 1814 AACATTATTGTGTTTTGCCAGATTCAGTTTCTAATTGATGTTGTTAAT 1861
|| ||||||||| | |||||||||| |||||||||||||||||||||
Sbjct 1843 AATATTATTGTGGT--GCCAGATTCAATTTCTAATTGATGTTGTTAAT 1888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92118000075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5