BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495378 Length=738 Score E Sequences producing significant alignments: (Bits) Value AT5G53110.1 | Symbols: | RING/U-box superfamily protein | chr5... 1099 0.0 > AT5G53110.1 | Symbols: | RING/U-box superfamily protein | chr5:21529022-21533159 FORWARD LENGTH=1300 Length=1300 Score = 1099 bits (595), Expect = 0.0 Identities = 676/715 (95%), Gaps = 6/715 (1%) Strand=Plus/Plus Query 1 ATGGATTTAACAAAAATAATATCATTCTCTCTATTATTCCTCTCTCTCCTAAT-CC--CG 57 ||||||||||||||| |||||||||||||||| || || || ||||| ||||| || || Sbjct 1 ATGGATTTAACAAAATTAATATCATTCTCTCTCTTGTTTCTATCTCTTCTAATCCCGACG 60 Query 58 ACGACGACG---ACTTCCACCATTACATGCACTAACGCCGTTTGTCGCCGTGACGACCCT 114 ||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 61 ACGACGACGACCACTTCCACCGTTACATGCACTAACGCCGTTTGTCGCCGTGACGGCCCG 120 Query 115 ATCATCCGTTTTCCATTCCGTCTAAAACACCAACAATCCCCTTCTTGCGGTTACGACAGA 174 |||||||||||||||||||||||||||||||||||||| | |||||| |||||||||| | Sbjct 121 ATCATCCGTTTTCCATTCCGTCTAAAACACCAACAATCTCATTCTTGTGGTTACGACAAA 180 Query 175 GGCTTCGACTTAACGTGCGATATTAACGCCGTTAACAGAACCACCATAACGTTACCTTTT 234 ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||| Sbjct 181 GGCTTCGACTTAACGTGCGATATTAACGCCGGTAACAGAACAACCATAACGTTACCGTTT 240 Query 235 TCCGGTAACTTCACCGTCGAAGAGATCGATTACGCAGCTCAAGAGATTTGGATCAACGAC 294 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCCGGTAACTTCACCGTGGAAGAGATCGATTACGCAGCTCAAGAGATTTGGATCAACGAC 300 Query 295 CCAAACAACTGTCTTCCTCAACGGATCTTAGAGCTAAACCTCAACACGACGCCGTTTACC 354 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 301 CCAAACAACTGTCTTCCTCAACGGATCTTACAGCTAAACCTCAACTCGACGCCGTTTAGT 360 Query 355 GGCGTTTACATGCGTCAGTTCACGTTCTTTAACTGTCCTACGTCAGAGTATCTCCGTTTT 414 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 361 GGCGTTTACATGCGTCAGTTCACGTTCTTTAACTGTCCTACTTCAGAGTATCTCCGTTTT 420 Query 415 AGGCCGTTGAATCCGATTACGTGTTTGAGTGATAAAAACAGCACGGTGTTTGCGACTCCT 474 ||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||| Sbjct 421 AGGCCGTTGAATCCGATAACGTGTTTGAGTGGTAAAAACAGCACGGTGTTTGCTACTCCT 480 Query 475 TCGCCTAGAGTGATAAACTACTTGTCGTCTCAATCATGCCGGTTAATGAAAACCGTTTAT 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TCGCCTAGAGTGATAAACTACTTGTCGTCTCAATCATGCCGGTTAATGAAAACCGTTTAT 540 Query 535 GTTCCGGTTCGGTGGCCGTTTTATGAACAGATCGTGTCGTCTTCGGATTTGAGTGATAAC 594 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 541 GTTCCGGTTCGGTGGCCGTTTTATGAGCAAATCGTGTCGTCTTCGGATTTGAGTGATAAC 600 Query 595 CTCTGGCTCACTTGGAGGGTTCCGAGATGTAGTAGGTGTGAGATTAGAGGTGGTAAATGT 654 |||||||| |||||||||||||| |||||||||||||||||||||| ||||||||| ||| Sbjct 601 CTCTGGCTTACTTGGAGGGTTCCAAGATGTAGTAGGTGTGAGATTAAAGGTGGTAAGTGT 660 Query 655 GGGATTAAGAGTAATTCTTCTAGTGAAATCATTTGCTCTGATGTTCATAAACCAG 709 ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 661 GGGATTAAGAGTAATTCTTCTCGTGAAATCATTTGCTCTCATGTTCATAAACCAG 715 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35816946811 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5