BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495378
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53110.1 | Symbols: | RING/U-box superfamily protein | chr5... 1099 0.0
> AT5G53110.1 | Symbols: | RING/U-box superfamily protein | chr5:21529022-21533159
FORWARD LENGTH=1300
Length=1300
Score = 1099 bits (595), Expect = 0.0
Identities = 676/715 (95%), Gaps = 6/715 (1%)
Strand=Plus/Plus
Query 1 ATGGATTTAACAAAAATAATATCATTCTCTCTATTATTCCTCTCTCTCCTAAT-CC--CG 57
||||||||||||||| |||||||||||||||| || || || ||||| ||||| || ||
Sbjct 1 ATGGATTTAACAAAATTAATATCATTCTCTCTCTTGTTTCTATCTCTTCTAATCCCGACG 60
Query 58 ACGACGACG---ACTTCCACCATTACATGCACTAACGCCGTTTGTCGCCGTGACGACCCT 114
||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 61 ACGACGACGACCACTTCCACCGTTACATGCACTAACGCCGTTTGTCGCCGTGACGGCCCG 120
Query 115 ATCATCCGTTTTCCATTCCGTCTAAAACACCAACAATCCCCTTCTTGCGGTTACGACAGA 174
|||||||||||||||||||||||||||||||||||||| | |||||| |||||||||| |
Sbjct 121 ATCATCCGTTTTCCATTCCGTCTAAAACACCAACAATCTCATTCTTGTGGTTACGACAAA 180
Query 175 GGCTTCGACTTAACGTGCGATATTAACGCCGTTAACAGAACCACCATAACGTTACCTTTT 234
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||
Sbjct 181 GGCTTCGACTTAACGTGCGATATTAACGCCGGTAACAGAACAACCATAACGTTACCGTTT 240
Query 235 TCCGGTAACTTCACCGTCGAAGAGATCGATTACGCAGCTCAAGAGATTTGGATCAACGAC 294
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCGGTAACTTCACCGTGGAAGAGATCGATTACGCAGCTCAAGAGATTTGGATCAACGAC 300
Query 295 CCAAACAACTGTCTTCCTCAACGGATCTTAGAGCTAAACCTCAACACGACGCCGTTTACC 354
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 301 CCAAACAACTGTCTTCCTCAACGGATCTTACAGCTAAACCTCAACTCGACGCCGTTTAGT 360
Query 355 GGCGTTTACATGCGTCAGTTCACGTTCTTTAACTGTCCTACGTCAGAGTATCTCCGTTTT 414
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 GGCGTTTACATGCGTCAGTTCACGTTCTTTAACTGTCCTACTTCAGAGTATCTCCGTTTT 420
Query 415 AGGCCGTTGAATCCGATTACGTGTTTGAGTGATAAAAACAGCACGGTGTTTGCGACTCCT 474
||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 421 AGGCCGTTGAATCCGATAACGTGTTTGAGTGGTAAAAACAGCACGGTGTTTGCTACTCCT 480
Query 475 TCGCCTAGAGTGATAAACTACTTGTCGTCTCAATCATGCCGGTTAATGAAAACCGTTTAT 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCGCCTAGAGTGATAAACTACTTGTCGTCTCAATCATGCCGGTTAATGAAAACCGTTTAT 540
Query 535 GTTCCGGTTCGGTGGCCGTTTTATGAACAGATCGTGTCGTCTTCGGATTTGAGTGATAAC 594
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 541 GTTCCGGTTCGGTGGCCGTTTTATGAGCAAATCGTGTCGTCTTCGGATTTGAGTGATAAC 600
Query 595 CTCTGGCTCACTTGGAGGGTTCCGAGATGTAGTAGGTGTGAGATTAGAGGTGGTAAATGT 654
|||||||| |||||||||||||| |||||||||||||||||||||| ||||||||| |||
Sbjct 601 CTCTGGCTTACTTGGAGGGTTCCAAGATGTAGTAGGTGTGAGATTAAAGGTGGTAAGTGT 660
Query 655 GGGATTAAGAGTAATTCTTCTAGTGAAATCATTTGCTCTGATGTTCATAAACCAG 709
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 661 GGGATTAAGAGTAATTCTTCTCGTGAAATCATTTGCTCTCATGTTCATAAACCAG 715
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35816946811
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5