BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495379
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53120.6 | Symbols: SPDS3 | spermidine synthase 3 | chr5:215... 1160 0.0
> AT5G53120.6 | Symbols: SPDS3 | spermidine synthase 3 | chr5:21534473-21537733
FORWARD LENGTH=1596
Length=1596
Score = 1160 bits (628), Expect = 0.0
Identities = 695/728 (95%), Gaps = 2/728 (0%)
Strand=Plus/Plus
Query 642 AAAATGTTCTTGTTGTTGGTGGAGGTGATGGTGGTGTTCTTCGAGAGATTTCTCGCCATA 701
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 AAAA-GTTCTTGTTGTTGGTGGAGGTGATGGTGGTGTTCTTCGAGAGATTTCTCGCCATA 929
Query 702 GTTCTGTTGAGGTTATTGATATCTGTGAGATAGACAAGATGGTTATAGATGTGTCTAAGA 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 GTTCTGTTGAGGTTATTGATATCTGTGAGATAGACAAGATGGTTATAGATGTGTCTAAGA 989
Query 762 AGTTCTTCCCCGAGTTAGCGGTTGGATTTGAGGATCCTCGTGTTCAACTTCACATTGGTG 821
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 990 AGTTCTTCCCCGAGTTAGCGGTTGGGTTTGACGATCCTCGTGTTCAACTTCACATTGGTG 1049
Query 822 ATGCTGCTGAGTTCCTCCGTAAATCCCCTGAAGGGAAGTATGATGCCATCATTGTTGATT 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 ATGCTGCTGAGTTCCTCCGTAAATCCCCTGAAGGGAAGTATGATGCCATCATTGTTGATT 1109
Query 882 CTTCAGATCCTGTTGGTCCTGCTCTAGCGCTTGTTGAGAAGCCCTTCTTCGAAACACTGG 941
|||||||||| || ||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 1110 CTTCAGATCCCGTAGGTCCTGCTCTTGCGCTTGTTGAGAAGCCTTTCTTCGAGACACTGG 1169
Query 942 CAAGAGCATTGAAGCCTGGGGGAATTCTTTGTAACATGGCGGAAAGTATGTGGCTCCATA 1001
| ||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1170 CTAGAGCGTTGAAGCCTGGGGGAGTTCTTTGTAACATGGCAGAAAGTATGTGGCTCCATA 1229
Query 1002 CTCATCTTATTGAAGATATGATCTCCATTTGCCATCAAACATTCAAAAGTGTTCACTATG 1061
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1230 CTCATCTTATTGAAGATATGATCTCCATTTGCCGTCAAACATTCAAAAGTGTTCACTATG 1289
Query 1062 CGTGGAGCAGCGTCCCCACATATCCAAGCGGGGTGATTGGTTTCGTCTTGTGCTCTACCG 1121
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1290 CGTGGAGCAGCGTCCCCACATATCCAAGCGGCGTGATTGGTTTCGTCTTGTGCTCTACTG 1349
Query 1122 AAGGACCAGCTGTTGATTTCAAGAACCCAATCAACCCAATTGAGAAACTAGAGGGTGCGA 1181
|||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1350 AAGGACCAGCTGTTGACTTCAAGAACCCAATCAACCCTATTGAGAAACTAGACGGTGCGA 1409
Query 1182 TGACCCATAAAAGAGAATTGAAGTTTTATAACTCTGATATGCACAGAGCAGCGTTCGCTT 1241
||||||||||||||||||||||||| ||||||||||||||||||||||| || || ||||
Sbjct 1410 TGACCCATAAAAGAGAATTGAAGTTCTATAACTCTGATATGCACAGAGCCGCATTTGCTT 1469
Query 1242 TGCCCACATTCTTGCAGAGAGAAGTGGCTTCACTTCTGGCTTCTTGACTTCTGTTTGGCT 1301
||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1470 TGCCCACATTCCTGCGGAGAGAAGTAGCTTCACTTCTGGCTTCTTGACTTCTGTTTGGCT 1529
Query 1302 CTACCTTATCCATCATGTCGAACTTTTGTAGAACTGTTGACGAGGAATAATAAATCATTG 1361
||||| ||||| |||| || |||||| |||||||| |||| |||||||||||||||||||
Sbjct 1530 CTACCATATCCCTCATATCAAACTTT-GTAGAACTCTTGAAGAGGAATAATAAATCATTG 1588
Query 1362 GAGGCTTT 1369
|||||||
Sbjct 1589 AAGGCTTT 1596
Score = 809 bits (438), Expect = 0.0
Identities = 474/492 (96%), Gaps = 0/492 (0%)
Strand=Plus/Plus
Query 157 CCGTTTACGACCAGTATACAGAGGCTGGAGCTGGAGAAGAAAAGGATTGTCTATGGAGGG 216
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 304 CCGTTTACGACCAGTATACAGAGGCTGGAGCTGGGGAAGAAAAGGATTGTCTATGGAGGG 363
Query 217 AGACGTCGGAAAAGGTTTGGTATGCCCGAAGACTATGGATGGGAAGGCGAGTAATGGGAA 276
||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||| ||
Sbjct 364 AGACGTCGGAATAGGTTTGGTATGCCAGAATACTATGGATGGGAAGGCGAGTAATGGAAA 423
Query 277 TGGTTTAGAGAAGACTGTACCTTCTTGTTGCCTTAAGGCTTTGGCATGTGTACCAGAGGA 336
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 424 TGGTTTAGAGAAGACTGTACCTTCTTGTTGCCTTAAGGCTATGGCATGTGTACCTGAGGA 483
Query 337 TGATGCTAAGTGCCACTCCACTGTTGTTTCTGGGTGGTTCTCGGAACCTCACCCTCGCTC 396
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 484 TGATGCTAAGTGTCACTCCACTGTTGTTTCTGGGTGGTTTTCGGAACCTCACCCTCGCTC 543
Query 397 TGGGAAAAGAGGCGGCAAATCAGTCTATTTCAACAACCCTATGTGGCCAGGAGAAGCACA 456
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 544 TGGGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAGGAGAAGCACA 603
Query 457 CTCACTGAAAGTTGAGAAAGTTCTGTTCAAAGACAATTCAGATTTTCAGGAGGTCCTAGT 516
|||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 604 CTCACTGAAAGTTGAGAAAGTTCTGTTCAAAGACAAGTCGGATTTTCAGGAAGTCCTAGT 663
Query 517 GTTCGAGTCAGCCACGTACGGAAAGGTGCTTGTTCTAGATGGTATTGTACAGCTGACTGA 576
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 664 GTTCGAGTCAGCCACGTACGGAAAGGTGCTTGTTCTAGATGGTATCGTACAGCTGACCGA 723
Query 577 GAAAGATGAATGTGCATATCAGGAGATGATAGCCCATCTGCCTTTATGCTCTATATCTTC 636
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 AAAAGATGAATGTGCATATCAGGAGATGATAGCCCATCTGCCTTTATGCTCTATATCTTC 783
Query 637 GCCTAAAAATGT 648
|||||||||||
Sbjct 784 CCCTAAAAATGT 795
Score = 213 bits (115), Expect = 4e-54
Identities = 139/150 (93%), Gaps = 4/150 (3%)
Strand=Plus/Plus
Query 9 AGAGACCTTTGAGAGAAGTGAGAAACGCAACAACAACACCGAAAGAGAGAGTCCAAATTC 68
|||| ||| |||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 111 AGAG-CCTGAGAGACAAGTGAGAAACGCAACAACACCACCGAAAGAGAGAGTCCAAATTC 169
Query 69 GAAAGAGAAA--GAATCAAATTCCTTCTTCTTCCtttttttgtttttCAATTACTACTTT 126
|||||||||| |||||||||||||||||||||||||||| | |||||||||| ||||||
Sbjct 170 GAAAGAGAAAAAGAATCAAATTCCTTCTTCTTCCTTTTTT-GATTTTCAATTATTACTTT 228
Query 127 AATCTTCTTTCCCGCTCACTATTCTTCTTC 156
||||||||||||||||| ||||||||||||
Sbjct 229 AATCTTCTTTCCCGCTCTCTATTCTTCTTC 258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69728557005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5