BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495386
Length=2408
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53150.1 | Symbols: | DNAJ heat shock N-terminal domain-con... 3286 0.0
AT2G14460.1 | Symbols: | unknown protein; Has 3 Blast hits to ... 84.2 5e-15
> AT5G53150.1 | Symbols: | DNAJ heat shock N-terminal domain-containing
protein | chr5:21554791-21557491 FORWARD LENGTH=2614
Length=2614
Score = 3286 bits (1779), Expect = 0.0
Identities = 2096/2244 (93%), Gaps = 42/2244 (2%)
Strand=Plus/Plus
Query 1 TTCCACTGAATCTAATCttttttttttGCTTCTTTGATTTTCCATTGAGACAGGTTGGGA 60
|||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 1 TTCCACTGAATCTAATATTTTTTATTTGCTTCTTTGATTTTGCATTGAGACAGGTTTGGA 60
Query 61 ACGTTCTG-GGAGTCTGTTGAAGATCCTCTATTCTAAAAAGTTTCCAGAGGACAATAGTT 119
|||||| | |||||||||||||||||||| ||||||||||| ||||||||||||||| ||
Sbjct 61 ACGTTCCGAGGAGTCTGTTGAAGATCCTCGATTCTAAAAAGCTTCCAGAGGACAATAATT 120
Query 120 TTTGACAGAGTAACTCTCGAGGACATGGAATGCAACAAGGATGAAGCGAAAAGGGCAATG 179
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGTGACGGAGTAACTCTCGAGGACATGGAATGCAACAAGGATGAAGCGAAAAGGGCAATG 180
Query 180 GATATTGCTGAGAGGAAGATGACAGAGAAGGACTACAATGGGGCGAAAAAGTTCGCTAAC 239
|||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||
Sbjct 181 GATATTGCTGAGAGGAAGATGACAGAGAAGGATTACACTGGGGCGAAAAAGTTTGCTAAC 240
Query 240 AAGGCTCAAAACTTGTTTCCCGAGTTGGATGGTCT-AAATCAATTG-TTGACGGCAATCA 297
||||||||||||||||||||||||||||||||||| ||| |||||| ||| ||||||||
Sbjct 241 AAGGCTCAAAACTTGTTTCCCGAGTTGGATGGTCTGAAA-CAATTGTTTG-TGGCAATCA 298
Query 298 ATGTTTTTATCTCGGGAGAGAAAAAATTCTG-CGGAGAAGCTGATTGGTATGGTGTCCTT 356
|||||| ||||||||||||||||| |||| | ||||||||||||||||||||||||||||
Sbjct 299 ATGTTTATATCTCGGGAGAGAAAACATTC-GCCGGAGAAGCTGATTGGTATGGTGTCCTT 357
Query 357 GGTGTAGACCCATTTGTTAGTGATGAAGCACTGAAAAAACAATACCGGAAATTGGTTCTC 416
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GGTGTAGACCCCTTTGCTAGTGATGAAGCACTGAAAAAACAATACCGGAAATTGGTTCTT 417
Query 417 ATGCTCCATCCGGATAAAAACAAGTGTAAAGGCGCTGAAGGTGCGTTTAAGCTGGTTGCA 476
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 418 ATGCTCCATCCGGATAAAAACAAGTGTAAAGGCGCTGAAGGTGCGTTTAATCTGGTTGCA 477
Query 477 GAAGCTTGGAATCTACTATCTGACAAGGAAAAGAGAATCTTGTATAACTTAAAGAGGGGC 536
||||||||| |||||||||||| ||||| ||||||||||| |||||| |||||||||||
Sbjct 478 GAAGCTTGGGCTCTACTATCTGATAAGGATAAGAGAATCTTATATAACGTAAAGAGGGGC 537
Query 537 AAAGATGTCAAAGAAGCTCAACAAAGATTCCCACCAACACAGAGCGGGATTCCACCACAC 596
||||||||||||| ||||||||||||||||||| |||||||||| | ||||||| |||||
Sbjct 538 AAAGATGTCAAAGCAGCTCAACAAAGATTCCCAACAACACAGAGAGAGATTCCATCACAC 597
Query 597 CAGCCAACTTCTAACGGGATTCCAAATGTAAGAGAGCATGTAGTTTTGAGTGCTAGGGCT 656
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 598 CAGCCAACTTCCAACGGGATTCCAAATGTAAGAGAGCATGTAGTTTCGAGTGCTAGGGCT 657
Query 657 AGATCTAAGCCCGCTGCCCGTAAGCCTGCTGCCCGTACGGATAGATCTCGCATGGGTTCG 716
|||| |||||| ||| ||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 658 AGATATAAGCCTGCTACCCGTAAGCCTGCTGCCCGTATGGATAGATCTCGCACGGGTTCG 717
Query 717 CCTGCTTTTGTTTCTCCGATGCATGAGGAGAATAGTACCTTTTGGACCAAGTGCAACAAA 776
||||||||||||| ||||| || |||||| ||||||||||||||||| ||||||||||
Sbjct 718 CCTGCTTTTGTTTATCCGA--CA-CAGGAGAGTAGTACCTTTTGGACCATGTGCAACAAA 774
Query 777 TGCAACACACAATATGAGTACCAGAGGGTTTATCTTAACCAAACCTTGCTTTGTCCACAC 836
||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 775 TGCGACACACAATATGAGTACCAGAGGGTTTATCTCAACCAAACATTGCTTTGTCCACAC 834
Query 837 TGCCGTCAAGGTTTCGTTGCAGAAGAGAAAACTCCGCCTAAAAATATTCCGAAGCCGCCA 896
|||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 835 TGCCATCATGGTTTCGTTGCAGAAGAGAAAACTCCGCCTACAAATATTCCGAAGCCCCCA 894
Query 897 GTCAACATCTCATCTAGCCAACAGCACCGGAGTTCCAAAAATCAAGCGTCAAACATGAAC 956
|||||||||||||||| |||||| ||||||||||||||||| |||||||| |||| ||||
Sbjct 895 GTCAACATCTCATCTAACCAACATCACCGGAGTTCCAAAAACCAAGCGTCGAACAAGAAC 954
Query 957 TCAAATGGTTCTTCTTCTAGGAGAGAGCCTGCACCATCTGTTAACC-TGAATTTTCAGTG 1015
|||||||||||||||| |||||||||||||||| |||||||||||| | |||||||||||
Sbjct 955 TCAAATGGTTCTTCTTATAGGAGAGAGCCTGCAACATCTGTTAACCAT-AATTTTCAGTG 1013
Query 1016 GGATTCTTCATCAAGAATGGGTGGTTCTAACAGCCGAAATGCCACAAATGAAGCGGCGAA 1075
||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1014 GGA---TTCATCAAGAATGGGTGGTTCTTACAGCCGAAATGCCACAAATGAAACGGCGAA 1070
Query 1076 TGTAGTTCAGCAAGCACAAGATAAACTGAAAAGAGGGTTTGGGGAGATGCAAGAAAGGGA 1135
|||||||||||||| |||||||||||||||||||| |||| |||||| ||||||||||||
Sbjct 1071 TGTAGTTCAGCAAGGACAAGATAAACTGAAAAGAGTGTTTTGGGAGACGCAAGAAAGGGA 1130
Query 1136 TGTGGCTAGAGGATTTACAAACTCTGATCTGGGGAATTTTAAGAGGCAGAAGACTGATGA 1195
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 GGCGGCTAGAGGATTTACAAACTCTGATCTGGGGAATTTTAAGAGGCAGAAGACTGATGA 1190
Query 1196 TTCCCATATGCGTGGTCCATCTGCAGGCTCTCGTCATCCTTATGTACAAGCATTGTTACG 1255
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1191 TTCCCATATGCGTGGTCCATCTGCAGGCTCTCGTCATCCGTATGTACAAGCATTGTTACG 1250
Query 1256 TTCTGATATaaaaaaaGCTCTTATGGACAGAGGCCAGTCAGAGATTTTTAAGAGACTTCC 1315
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 TTCTGATATAAAGAAAGCTCTTATGGACAGAGGCCAGTCAGAGATTTTTAAGAGACTTCC 1310
Query 1316 GAAGATGATCGCTGAAACGGAAGGGAAGGTGAACGCAACTGAAGGGGAGAAGAACAGTAT 1375
| |||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1311 TATGATGATCGCTAAAATGGAAGGGAAGGTGAACCCAACTGAAGGGGAGAAGAACAGTAC 1370
Query 1376 GAAGGCAACGAGCAAGATGAGTAGCAAGGCGAA-TGAGGTTGAAAGGAGCAAGATAAGTA 1434
|||||||| ||||||||||||| || ||||||||||||||||||||| ||||
Sbjct 1371 GAAGGCAA---------TGAGTAGCAAGGC-AAGTGAGGTTGAAAGGAGCAAGATGAGTA 1420
Query 1435 GCACCGCGAATGAGGTTGAAAGGTCAGTTGAGGTTGATGA---A-GAGATGGATGATGTA 1490
|||| ||||||||||||||||||||||||||||| || | ||| | | |||| |
Sbjct 1421 GCACGGCGAATGAGGTTGAAAGGTCAGTTGAGGTA-ATTCCCCATGAG-TC-A-GATGAA 1476
Query 1491 GTGAAGGAAATCGTTGTTCCAGATTCAGACTTTCACAACTTTGATCTTGACCGATCTGAA 1550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 GTGAAGGAAATCGTTGTTCCAGATTCAGACTTTCACAACTTTGATCTTGACCGATCTGAA 1536
Query 1551 AGTTCTTTTAAAGATGACCAGATTTGGGCTGCTTATGACGATGAC-GATGGAATGCCTCG 1609
||| |||||||||| || || |||||||||||||||||||||| | ||||||||||||||
Sbjct 1537 AGTGCTTTTAAAGACGATCAAATTTGGGCTGCTTATGACGATG-CTGATGGAATGCCTCG 1595
Query 1610 GTTTTACGCCCGCATCCAAAAGGTGATCTCTGTGAATCCCTTTAAGATGAAAATCAGCTG 1669
||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||| ||
Sbjct 1596 GTTTTACGCCCGCATCCAAAAGGTGATTTCTGTGAATCCTTTTAAGTTGAAAATCAGTTG 1655
Query 1670 GCTCAATTCCAAAAGCACCAGTGAATTTGGTCCTATAGACTGGATGGGTGCTGGTTTTGC 1729
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1656 GCTCAATTCCAAAACCACCAGTGAATTTGGTCCCATAGACTGGATGGGTGCTGGTTTTGC 1715
Query 1730 TAAAACATGTGGGGATTTTAGGTGTGGGAGATATGAATCTACAGATACACTAAATGCCTT 1789
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1716 TAAATCATGTGGGGATTTTAGGTGTGGGAGATATGAATCTACAGATACACTAAATGCCTT 1775
Query 1790 TTCTCACAGTGTCGATTTTACCAAAGGTGCAAGAGGACTCCTCCATATTCTTCCCAAAAA 1849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1776 TTCTCACAGTGTCGATTTTACCAAAGGTGCAAGAGGACTCCTCCATATTCTTCCCAAAAA 1835
Query 1850 GGGACAAGTTTGGGCATTGTATCAAAATTGGTCCCCTGAGTGGGACAAGAATACCCCTGA 1909
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1836 GGGACAAGTTTGGGCATTGTATCGAAATTGGTCCCCTGAATGGGACAAGAATACCCCTGA 1895
Query 1910 CGAAGTTAAACACAAGTACGAGATGGTGGAAGTTCTTGATGACTATACAGAAGACAATCA 1969
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1896 TGAAGTTAAACACAAGTATGAGATGGTGGAAGTTCTTGATGACTATACAGAAGACGATCA 1955
Query 1970 GAGTTTAACCGTGGCTCTCTTACTCAAAGCTGAAGGATTCAGGGCAGTTTTCCGCAGAAG 2029
|||| |||| |||||||||||||||||||||||||| ||||||| ||||||||||||| |
Sbjct 1956 GAGTCTAACGGTGGCTCTCTTACTCAAAGCTGAAGGGTTCAGGGTAGTTTTCCGCAGATG 2015
Query 2030 CACAGA-AAGACTTGGTGTGAGGAAGATTGCAAAGGAAGAAATGCTTA-GATTCTCCCAC 2087
|||||| || ||||||||||||||||||||| |||||||||||| ||| ||||||||||
Sbjct 2016 CACAGAGAA-ACTTGGTGTGAGGAAGATTGCCAAGGAAGAAATG-TTAAGATTCTCCCAT 2073
Query 2088 CAGGTGCCTCATTACATTCTTACAGGGAAAGAAGCTGATAACGCACCAGAAGGTTATCTG 2147
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 2074 CAGGTGCCTCATTACATTCTTACAGGGAAAGAAGCTGATAACGCACCGGAAGGTTTTCTG 2133
Query 2148 GAACTAGACCCGGCTGCAACTCCTTGTGCATTCTCTTCAGAGAACGCAGAGGCGAATGAG 2207
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2134 GAACTAGACCCTGCTGCAACTCCTTGTGCATTCTCTTCAGAGAACGCAGAGGCGGATGAG 2193
Query 2208 AAAAGTGAAGCTGTAGAA-GAGAA 2230
|||||||||||||| ||| |||||
Sbjct 2194 AAAAGTGAAGCTGT-GAAAGAGAA 2216
> AT2G14460.1 | Symbols: | unknown protein; Has 3 Blast hits to
3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr2:6154493-6155004 REVERSE LENGTH=512
Length=512
Score = 84.2 bits (45), Expect = 5e-15
Identities = 55/60 (92%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1364 GAAGAACAGTATGAAGGCAACGAGCAAGATGAGTAGCAAGGCGAATGAGGTTGAAAGGAG 1423
|||||| ||| |||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 209 GAAGAATTGTACGAAGGCAACGAGCAAGATGAGTAGCAAGGCGAATGAGGTTTAAAAGAG 268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119577698190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5