BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495390
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53180.1 | Symbols: ATPTB2, PTB2 | polypyrimidine tract-bind... 2348 0.0
> AT5G53180.1 | Symbols: ATPTB2, PTB2 | polypyrimidine tract-binding
protein 2 | chr5:21568200-21571894 REVERSE LENGTH=1612
Length=1612
Score = 2348 bits (1271), Expect = 0.0
Identities = 1463/1552 (94%), Gaps = 27/1552 (2%)
Strand=Plus/Plus
Query 1 CCAAATCTTCGTCTCTTCTTTATCTTCCCCAGCGCGAGCGAAACCCTAACTTCTCTGCAG 60
|||||||||| |||||||||||||||||||| | |||||||||||| ||||||||||
Sbjct 35 CCAAATCTTCTTCTCTTCTTTATCTTCCCCA--AC--GCGAAACCCTAATTTCTCTGCAG 90
Query 61 ATTTTGCAC-AATCTCAGCTCCAAGATTCGTT-TGAGAAATGTCATCTGTTTCAAGCCAG 118
||||| | | ||||||||||| |||||||||| |||| |||||| |||||||||||||||
Sbjct 91 ATTTTTCCCAAATCTCAGCTCTAAGATTCGTTGTGAGCAATGTCTTCTGTTTCAAGCCAG 150
Query 119 CCACAGTTTCGTTACACGCAACCTCCTTCAAAGGTTCTTCATTTGAGAAACTTGCCATGG 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 151 CCACAGTTTCGTTACACGCAACCTCCTTCAAAGGTTCTTCATTTGAGAAACTTGCCATGG 210
Query 179 GAATGCACTGAAGAAGAGTTAATTGAACTCGGCAAGCCTTTTGGTACTGTTGTTAATACA 238
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 211 GAATGCACTGAAGAGGAGTTAATTGAACTCGGAAAGCCTTTTGGTACTGTTGTTAATACA 270
Query 239 AAGTGCAATGTTGGAGCTAATCGAAATCAAGCTTTCATTGAGTTTGAAGATTTAAACCAA 298
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 271 AAATGCAATGTTGGAGCTAATCGAAATCAAGCTTTCATTGAGTTTGAAGATTTGAATCAA 330
Query 299 GCTATACAAATGATTTCTTACTATGCTTCTTCGTCGGAGCCGGCTCAAGTTCGAGGTAAA 358
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 331 GCTATACAAATGATATCTTACTATGCTTCTTCTTCGGAGCCTGCTCAAGTTCGTGGTAAA 390
Query 359 ACTGTCTACCTCCAGTACTCTAACAGGCAAGAGATAGTGAATAACAAGACGACAGCGGAT 418
|||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct 391 ACTGTCTACCTCCAGTACTCCAACAGGCAAGAGATAGTGAACAACAAAACGACAGCGGAT 450
Query 419 GTTGTGGGGAATGTTCTTCTGGTGACTGTCGAAGGCGAGGATGCTCGTATGGTCAGCATT 478
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 451 GTTGTGGGGAATGTTCTTCTGGTGACTATCGAAGGCGATGATGCTCGTATGGTCAGCATT 510
Query 479 GATGTCTTGCATCTGGTATTCTCAGCATTTGGGTTTGTCCACAAGATTACTACTTTCGAG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 GATGTCTTGCATCTGGTATTCTCAGCATTTGGGTTTGTCCACAAGATTACTACTTTCGAG 570
Query 539 AAGACAGCCGGATACCAGGCACTGGTTCAATTTTCTGATG-AGGAAACTGCAACCGCTGC 597
||||||||||||||||| ||||||||||||||| |||||| || ||||||||||||||||
Sbjct 571 AAGACAGCCGGATACCAAGCACTGGTTCAATTTACTGATGCAG-AAACTGCAACCGCTGC 629
Query 598 AAAAAATGCCCTTGATGGAAGAAGCATCCCTAGGTATCTACTCGCTGAG-CAAGTGGGAC 656
|||| |||||| |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 630 AAAACTTGCCCTCGATGGAAGAAGCATCCCTAGGTATCTACTCGCTGAGACC-GTGGGAC 688
Query 657 AATGCTCACTTAAAATCACATATTCAGCTCATACAGATCTGACTGTCAAATTTCAGAGTC 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 AATGCTCACTTAAAATCACATATTCAGCTCATACAGATCTGACTGTCAAATTTCAGAGTC 748
Query 717 ATCGGAGCAGGGACTATACTAATCCTTACCTTCCAATTGCTCCATCAGCCATTGACAGTA 776
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 749 ATCGGAGCAGGGACTATACTAATCCTTACCTTCCCGTTGCTCCATCAGCCATTGATAGTA 808
Query 777 CTGGTCAGGTGGCTGTGGGTGTAGACGGGAAGAAGATGGAGCCTGAAAGTAATGTTCTTC 836
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 809 CTGGTCAGGTGGCTGTGGGTGTAGACGGGAAGAAGATGGAACCTGAAAGTAATGTTCTTC 868
Query 837 TCGCATCCATTGAAAACATGCAGTATGCAGTAACCTTGGATGTTCTACACATGGTTTTTG 896
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 869 TCGCATCTATTGAAAACATGCAGTATGCAGTAACCTTGGATGTTTTACACATGGTTTTTG 928
Query 897 CGGCTTTTGGGGATGTTCAAAAAATTGCAATGTTTGACAAGAATGGTGGGCTACAGGCAC 956
||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 929 CGGCTTTTGGGGAAGTTCAAAAGATTGCAATGTTTGACAAGAATGGTGGGGTACAGGCAC 988
Query 957 TGATCCAATACAAAGATGTTCAAACGGCTGTTGTGGCGAAGGAAGCATTGGAAGGACATT 1016
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 989 TGATCCAATACTCAGATGTTCAAACGGCTGTGGTGGCGAAGGAAGCATTGGAAGGACATT 1048
Query 1017 GTATCTATGATGGTGGTTTTTGTAAGCTCCACATTACTTATTCACGCCACACTGACCTCA 1076
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1049 GTATCTACGATGGTGGTTTTTGTAAGCTCCACATTACTTATTCACGCCACACCGACCTCA 1108
Query 1077 GCATAAAGGTGAACAACGATAGAAGCAGAGACTACACAATGCCCAACCCACCGGTTCCAA 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 GCATAAAGGTGAACAACGATAGAAGCAGAGACTACACAATGCCCAACCCACCGGTTCCAA 1168
Query 1137 TACCTCAACAACCCGGTCAGAATCCATACACCGGCAATCCACAGCAATACCACGCAGCAG 1196
| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1169 TGCCTCAACAACCCGTTCAGAATCCATACGCCGGCAATCCACAGCAATACCACGCAGCAG 1228
Query 1197 GTGGGAGCCACCA---GCAGCAGC--CA-C-A-A-GGTGGATGGGTCCAACCAGGAGGGC 1247
||||||||||||| |||||||| || | | | |||||||||||||||||||||||||
Sbjct 1229 GTGGGAGCCACCACCAGCAGCAGCAGCAGCCACAAGGTGGATGGGTCCAACCAGGAGGGC 1288
Query 1248 AAGGCTCAATGGGAATGGGTGGTGGTGGTCACAATCCTTACATGGCACCACCATCTTCAA 1307
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1289 AAGGCTCTATGGGAATGGGTGGTGGTGGTCACAATCATTACATGGCACCACCATCTTCAA 1348
Query 1308 GCTCAATGCATTATGGTCCGGGTGGTCATATGCCTCCACAGCATTATGGTGGTCCTGGTC 1367
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1349 GCTCAATGCATCAAGGTCCGGGTGGTCATATGCCTCCACAGCATTATGGTGGTCCTGGTC 1408
Query 1368 CAATGCATTAGAGAGAGAAAGAAAGAAAGTCCCT-AAAAGTCGAAGACAAA-AA-GATGT 1424
|||||||||||||||||||| | |||||||||| |||||||||||||||| || |||||
Sbjct 1409 CAATGCATTAGAGAGAGAAA-A--GAAAGTCCCTCAAAAGTCGAAGACAAAGAAAGATGT 1465
Query 1425 TTAATCTCTCTCTTTATCTCTCGTAGCTCTGttttttttt-tttGGAACACTAGTACGTG 1483
||||||||||||||||| |||| |||||||||||||| ||||||||||| |||| ||
Sbjct 1466 TTAATCTCTCTCTTTATTTCTCTTAGCTCTGTTTTTTAAAGTTTGGAACACTTGTACTTG 1525
Query 1484 TGTCCAAATGATGATTTTT-AACTATTAAACCATTCGAGAAATGTATTAGAA 1534
|||||||| |||| ||||| || || |||||||| ||||||||||||||||
Sbjct 1526 TGTCCAAAAGATGTTTTTTTAAGGATAAAACCATTTGAGAAATGTATTAGAA 1577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76555831125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5