BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495392
Length=990
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53190.1 | Symbols: SWEET3, AtSWEET3 | Nodulin MtN3 family p... 1310 0.0
> AT5G53190.1 | Symbols: SWEET3, AtSWEET3 | Nodulin MtN3 family
protein | chr5:21572251-21574329 REVERSE LENGTH=1003
Length=1003
Score = 1310 bits (709), Expect = 0.0
Identities = 888/969 (92%), Gaps = 34/969 (4%)
Strand=Plus/Plus
Query 45 ATGGGTGATAAACTTCGATTATCCATCGGAATTTTGGGAAACGGAGCCTCCT-TGTTGCT 103
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 46 ATGGGTGATAAACTTCGATTATCCATCGGAATTTTGGGAAACGGAG-CTTCTCTGTTGCT 104
Query 104 CTATACAGCTCCAATATTAACATTTTCAAGGGTGTTTAAGAAGAAAAGCACAGAGGAATT 163
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 105 ATATACAGCTCCAATAGTAACATTTTCAAGGGTGTTTAAGAAGAAAAGCACAGAGGAATT 164
Query 164 CTCATGTTTTCCTTACGTTATGACACTCTTCAACTGTTTGATTTATACTTGGTACGGTTT 223
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 165 CTCATGTTTTCCTTACGTTATGACACTCTTTAACTGTTTGATATATACTTGGTACGGTTT 224
Query 224 ACCGATTGTGAGTCATCTTTGGGAGAATCTTCCTCTCGTCACCATTAATGGAGTCGGCAT 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 ACCGATTGTGAGTCATCTTTGGGAGAATCTTCCTCTCGTCACCATTAATGGAGTCGGCAT 284
Query 284 CCTTCTCGAATCTATCTTCATTTTCATGTATTTCTGCTATGCGTCGCCCAAAGAAAAGAT 343
||||||||||||||||||||||||||| ||||||| ||| || || || |||||||||||
Sbjct 285 CCTTCTCGAATCTATCTTCATTTTCATATATTTCTACTACGCATCACCAAAAGAAAAGAT 344
Query 344 TAAGGTTGGTGTTACACTTGTTCCGGTGATCGTTGTGTTCGGCTTAACGACAGCAATCTC 403
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 345 TAAGGTTGGTGTTACATTTGTTCCGGTGATCGTTGGGTTCGGCTTAACGACAGCAATCTC 404
Query 404 AGCCGTGGTATTTGACGACCACCGCCACCGGAAATCTTTCGTCGGAAGTGTTGGCCTCGT 463
|||| |||||||||||||||| || ||||| ||||| |||||||||||||||||||||||
Sbjct 405 AGCCTTGGTATTTGACGACCATCGTCACCGAAAATCATTCGTCGGAAGTGTTGGCCTCGT 464
Query 464 GGCTTCCATCTCCATGTACGGTTCTCCTCTCATCGTTATGAAGAAAGTGATAGAGACAAA 523
|||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 465 GGCTTCCATCTCTATGTATGGTTCTCCTCTCGTCGTTATGAAGAAAGTGATAGAGACAAG 524
Query 524 AAGTGTGGAATACATGCCGTTCTACTTGTCCTTCTTCTCATTTCTGGCTAGTTCCCTTTG 583
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 525 AAGTGTGGAATACATGCCGTTTTACTTGTCCTTCTTCTCATTTCTGGCTAGTTCCCTTTG 584
Query 584 GTTGGCATATGGCTTACTCAGCCATGATCTCTTTCTTGCGTCACCTAATATGGTGGCGAC 643
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 585 GTTGGCATATGGCTTACTCAGCCATGATCTCTTTCTTGCGTCACCTAATATGGTTGCGAC 644
Query 644 TCCATTGGGGATTCTCCAACTTGTCCTCTACTTCAAGTACAAGAATAAGAAGGAATTAGC 703
||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 645 TCCATTGGGAATTCTCCAACTTATCCTCTACTTCAAGTACAAGAATAAGAAGGATTTAGC 704
Query 704 ACCAACAACAATGGTGATGAGCAGAAGGAA-TGATGATGA-GA-A-GAACAAAGCCGCAC 759
|||||||||||||||||| | || || ||| |||| |||| || | |||||||||| |||
Sbjct 705 ACCAACAACAATGGTGATCACCA-AACGAAATGATCATGATGACAAGAACAAAGCCACAC 763
Query 760 TTGAGCTTGAAGTTGACGTTGATCGTGATAGTGATGCCAATGAGAAGAATTCCAACAATG 819
||||| ||| ||||||||||||||| |||||||| |||||||||||||||| |||||||
Sbjct 764 TTGAGTTTGTTGTTGACGTTGATCGTAATAGTGATACCAATGAGAAGAATTCTAACAATG 823
Query 820 CATGTTAGCTCATCGAAT-TAATATCTCGGATGTGTTTTCCCTAA--CT--T-------C 867
| |||||||| | ||||||||||||||||||||||| || || | |
Sbjct 824 C-------CTCATCGA-TCTAATATCTCGGATGTGTTTTCCCCAAAACTCCTTGTAAATC 875
Query 868 -AGAGATATTTTATGTAAACACCTCATGTGTTGT--G--CTTTCATTACATAATGTTACA 922
||||||||||||| |||||||||||| |||||| | ||||||||| |||| ||||||
Sbjct 876 CAGAGATATTTTATCTAAACACCTCATATGTTGTACGTGCTTTCATTAAATAACGTTACA 935
Query 923 TCATCTCTATAAGTTATGGTGGTGATGATATTGTTGATCACGTGAATAA-AAAGGTGGAA 981
||| ||||||| |||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 936 TCA-CTCTATACGTTATGGTGGTGATGATATTGTTGATCATGTGAAAAATAAAGGTGGAA 994
Query 982 ATGCTATGT 990
||||||||
Sbjct 995 GTGCTATGT 1003
Score = 82.4 bits (44), Expect = 8e-15
Identities = 44/44 (100%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 1 TTCCCTAATCTTTGTTCTTCCGGCCAATCAAATGGGTGATAAAC 44
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 15 TTCCCTAATCTTTGTTCTTCCGGCCAATCAAATGGGTGATAAAC 58
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48475951855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5