BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495395
Length=2024
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53220.1 | Symbols: | unknown protein; Has 3099 Blast hits ... 2242 0.0
> AT5G53220.1 | Symbols: | unknown protein; Has 3099 Blast hits
to 2528 proteins in 332 species: Archae - 2; Bacteria - 245;
Metazoa - 1059; Fungi - 555; Plants - 177; Viruses - 49;
Other Eukaryotes - 1012 (source: NCBI BLink). | chr5:21595994-21598224
FORWARD LENGTH=1975
Length=1975
Score = 2242 bits (1214), Expect = 0.0
Identities = 1626/1815 (90%), Gaps = 67/1815 (4%)
Strand=Plus/Plus
Query 254 AGAGGAATCTTTGGCTATGGAGGTGAATTCGATGGGACAAAATTGTCGGTGTCTTGAGTT 313
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 160 AGAGGAATTTTTGGTTATGGAGGTGAATTCGATGGGACTAAATTGTCGGTGTCTTGAGTT 219
Query 314 AGAAGAAAGGGTTTTAAAAGGTGAAGAAAAGTACATTGAGTTAGAAACAGAGTTGCAGAA 373
||||||||||||||||||||||||||||| ||||| | | ||||||||||||||||||||
Sbjct 220 AGAAGAAAGGGTTTTAAAAGGTGAAGAAAGGTACACTCACTTAGAAACAGAGTTGCAGAA 279
Query 374 ACGAAACAAAGAGTTTGAGTCACTTGAATTGAGGGTTAAAGAATTGGAATCGGAGAAGTT 433
||||||||| |||||||| ||||||||||||| | |||||||||||||||| ||||||||
Sbjct 280 ACGAAACAATGAGTTTGAATCACTTGAATTGAAGTTTAAAGAATTGGAATCAGAGAAGTT 339
Query 434 AGTAGTTGAAGAAGAGTTGAA-GAATCTTAAAGAATCTGAGGAAGGTTCATTGATTGATC 492
|||||||||||||||| | || ||||||||||||||||||||||||| |||||||||| |
Sbjct 340 AGTAGTTGAAGAAGAG-TCAAGGAATCTTAAAGAATCTGAGGAAGGTGCATTGATTGAGC 398
Query 493 AGATTATGGTGAAC-GCAGCGTTGGAGTTTGAGAAACAGAGGATTGGAGAATAAAGTTTG 551
|||| ||||||||| | ||| |||||| ||||||| |||||||||||| |||||||||||
Sbjct 399 AGATGATGGTGAACAG-AGCATTGGAGGTTGAGAAGCAGAGGATTGGAAAATAAAGTTTG 457
Query 552 AGAAACTTGTGGAGACGGTTCGAAAGTTAGATGAAATTGGTGGGTTTAGATATGGAGAAT 611
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 AGAAACTTGTGGAGACTGTTCGAAAGTTAGATGAAATTGGTGGGTTTAGATATGGAGAAT 517
Query 612 TGGAATTGGATGAGAATGTGAAGTTAGGGTTGGAGTTAGCTAGGATCAAGAATACTGAAT 671
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 518 TTGAATTGGATGAGAATGTGAAGTTAGGGTTGGAGTTAGCTAGGATCAAGAATACAGAAT 577
Query 672 CTTGTAAAGTGTATAATGATGATGCTCTGACTAGGGAAGGTTTAGGTTATCATCAAAG-T 730
|||||||||||| ||| ||||| || ||||||||||||| ||||||||||||||| | |
Sbjct 578 CTTGTAAAGTGTTTAAAGATGA--CT-TGACTAGGGAAGGATTAGGTTATCATCAAGGAT 634
Query 731 TCAGGCTCACCTTGTATGACCACTCCGGTTAAAGACTATATCTT-GG-AGAGA--GACA- 785
| ||||||||||||||||||||| ||||||||||||||||| || || ||||| || |
Sbjct 635 T-AGGCTCACCTTGTATGACCACACCGGTTAAAGACTATATATTAGGGAGAGACAGAGAT 693
Query 786 -GAGACAGAGACAACATGTCTTCTCGGAGACGAGTAAATAAGATGTTGTCGTTTAAAGAT 844
|||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 694 AGAGACAGAGACACCATGTCTTCTCGGAGACGAGTGAATAAGATGTTGTCGTTTGAAGAT 753
Query 845 GATGGCCACGAATTGATTGATTTAGTTGATTTATGTGATGGTGAAACAGAGGAGAGAAGT 904
||||| ||| |||||| |||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 754 GATGGTCACAAATTGACTGATGTAGTTGATTTATGTGATAGTGAAACAGAGCAGAGAAGT 813
Query 905 GAG-A--AGGAATCTGCTGATGTTATGGATACTTTAGAGGAGAG-AAGTATTGGTGAGAA 960
||| | |||||| ||||||||||||||||||| |||||||| | || ||||||||||||
Sbjct 814 GAGGAGGAGGAATTTGCTGATGTTATGGATACTATAGAGGAG-GCAAATATTGGTGAGAA 872
Query 961 TTATGAAGATGAAGATGTGGAACCTTGTGATGTTAACACAAGTACTCCTCTTTCGAGGCG 1020
|||||||||||||||||||||| ||||||||| ||||||||||| ||||||||| |||||
Sbjct 873 TTATGAAGATGAAGATGTGGAAGCTTGTGATGCTAACACAAGTAGTCCTCTTTCTAGGCG 932
Query 1021 TAAGAGGAAGCGGGTTATTGCCAGCGATGA--A-GATGATG---ATGATGA--A-GAC-A 1070
|||||||||||||||||||||||||||||| | ||||||| ||||||| | || |
Sbjct 933 TAAGAGGAAGCGGGTTATTGCCAGCGATGATGATGATGATGCTGATGATGATGATGAAGA 992
Query 1071 -A-TATACCGATTTCACTACTCATGAATTTGAAACCAACTAACCAAGAGATGTCAGATTT 1128
| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 993 TAATATACCGATTTCAATACTCAAGAATTTGAAACCAACTAACCAAGAGATGTCAGATTT 1052
Query 1129 GGTTGATACATCAAACAAAGGAGAGAGTGAGTCCAGGAGATTGAGTGGA-AAGCGTCGAG 1187
| |||||||| | |||||||||||||||||||| || |||||||||||| || |||||||
Sbjct 1053 GTTTGATACACCTAACAAAGGAGAGAGTGAGTCTAGAAGATTGAGTGGACAA-CGTCGAG 1111
Query 1188 TGTCGTCAAGACTGAATAAACAGAGAGTTT-TGGAAGAGATATCTGCTACAACAGAGAGA 1246
|||||||||||||||||||| ||||||||| || ||||| |||||||| |||||||||||
Sbjct 1112 TGTCGTCAAGACTGAATAAAAAGAGAGTTTCTG-AAGAGGTATCTGCTTCAACAGAGAGA 1170
Query 1247 CTTGTGGGAATCCTGACAAGTGATAATGCAGACGATGATGAGACAGAAGAAGA-G-T-CA 1303
||||||||||||| |||| |||||||| || |||||||||||||||||||| | | ||
Sbjct 1171 CTTGTGGGAATCCCAACAACCGATAATGCCGAGGATGATGAGACAGAAGAAGAAGGTTCA 1230
Query 1304 GA-A---AGCG--AGAGTTTGGATGGGTTTATTGT---TGATGATGATAGTCATGAAAGT 1354
|| | || | ||||||| |||||||||||| | ||||||||||||||| || |
Sbjct 1231 GAGAGTGAGGGTGAGAGTTTAGATGGGTTTATTATCGATGATGATGATAGTCAGGAGTCT 1290
Query 1355 GTCAGTGAAAAGTCTGATGAAACCGGGGAAGAGGAATCTGATGGAGAACCTGGTTATGCT 1414
|||||||||||||||||||||| ||||| ||||||||| ||||||||| ||||||||||
Sbjct 1291 GTCAGTGAAAAGTCTGATGAAATCGGGGTAGAGGAATCCGATGGAGAAGTTGGTTATGCT 1350
Query 1415 GAAGTCATGTCAAGGTTAAGGAGGGACAAGAAACCCGAGAACCGGAAATGGGAGTATGAG 1474
|| || |||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 1351 GATGTTATGTCAAGGTTAAGGAGGGAGAAGAAACCCGAGAAGCGTAAATGGGAGTATGAG 1410
Query 1475 GCAGATATGCTGGCAGATTTCGGTAAAGATCCCGAGCTTTGTATGAGAGCGGTTTGTGTT 1534
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1411 GCAGATATGTTGGCAGATTTCGGTAAAGATCCTGAGCTTTGTATGAGAGCGGTTTGTGTT 1470
Query 1535 CTGTTCAGGTTTCAAACAGAAGATGAAAAGGTGGGAAGATCAAGTCATGTCAGTAATGGT 1594
||||| ||||||||||||||||||||||| |||| |||||||||||||||| |||||||
Sbjct 1471 CTGTTTAGGTTTCAAACAGAAGATGAAAAAGTGGAAAGATCAAGTCATGTCTCTAATGGT 1530
Query 1595 CGCGGTTTCAGCAAGGTTGACGCTGAAAGGGGCACTAGCATAGCCCTATTTCTGACGGAT 1654
||||||||||||||||||||||||| ||||||||||||||| || || ||||||||||||
Sbjct 1531 CGCGGTTTCAGCAAGGTTGACGCTGTAAGGGGCACTAGCATTGCACTGTTTCTGACGGAT 1590
Query 1655 GGAGATCCCGCTGGTGATTTGAAGAAATCGGTTGAGGATTTGAAAAGTTTCA-AGTTTGA 1713
|||||| |||| || ||| |||||||||| |||||||| |||||| |||| | ||| |
Sbjct 1591 GGAGATTCCGCAGGCGATATGAAGAAATCCGTTGAGGAATTGAAA-GTTTTTGACTTTAA 1649
Query 1714 AGACGTTA-AGAAATGCGAA-ATATTAGCATGCAAATACTCGAAACAACTCTTCGAGATC 1771
|| ||| | ||||||||||| | ||||||| |||||||||| |||||||||||| |||||
Sbjct 1650 AGGCGT-AGAGAAATGCGAAGA-ATTAGCACGCAAATACTCTAAACAACTCTTCCAGATC 1707
Query 1772 TATAACAACAGAGAAGATCCATTCTTTGCTATTCCCCCATCTCCATGACTTGGAGGGTAT 1831
||||||||||||||||||||||||||| || |||| ||||||||||||||||||| ||
Sbjct 1708 TATAACAACAGAGAAGATCCATTCTTTACTCTTCCTCCATCTCCATGACTTGGAGA--AT 1765
Query 1832 TA--TAGTATAAGTCAATAGCTAGTTTATGGTAATGGttttttttttgttttttttttGG 1889
|| ||||| ||||| |||||||||||||| ||| |||||||||| |||||| | ||
Sbjct 1766 TAGCTAGTA---GTCAACAGCTAGTTTATGGTTATG-TTTTTTTTTT-TTTTTTGT--GG 1818
Query 1890 TAAACTTTAGTCTGGTTTGAGATGAAAACCAGAGATTAATCTAAT-GAAATTAGAGACTG 1948
|||| ||||||| ||||||||||||||||||||||||||||||| | | |||||| ||
Sbjct 1819 TAAATTTTAGTCCCGTTTGAGATGAAAACCAGAGATTAATCTAATAGGA-TTAGAGTCTA 1877
Query 1949 AATTTACTTTTTGGGTGTAGATGGAAGGATGATTTGGATTATGATGATGACTTAAACACA 2008
|||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 1878 AATTTACTTTTTAGGTGTAAATGGAAGGATGATTTGGATTATGATGATGACTGAAACATA 1937
Query 2009 GTTTTGAATAATATT 2023
|||||||||||||||
Sbjct 1938 GTTTTGAATAATATT 1952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100300688910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5