BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495398
Length=491
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53250.1 | Symbols: AGP22, ATAGP22 | arabinogalactan protein... 688 0.0
> AT5G53250.1 | Symbols: AGP22, ATAGP22 | arabinogalactan protein
22 | chr5:21603620-21604231 FORWARD LENGTH=511
Length=511
Score = 688 bits (372), Expect = 0.0
Identities = 467/508 (92%), Gaps = 25/508 (5%)
Strand=Plus/Plus
Query 1 tttttttCTTGATTTTTCTGGTGAGATTCTACAAAACCAAAACAAGATTCCTTCGCCGGA 60
|||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 12 TTTTTTCCTTGATTTTTCTGGTGAGATTCTACAAAACC--AA-AAGATTCCTTCGCCGGA 68
Query 61 ATAATCACCGGAGATAAAGA-AAAAGAATGGCGTCCCTGAAATTTCCGTTGGAGATTCTC 119
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 69 ATAATCACCGGAGATAAAGATAAAGGAATGGCGTCCCTGAAATTTCCGTTGGAGATTCTC 128
Query 120 GCCGTCTTCGTCATCATCTCCGTGATTCTTTTGCCGATTGCTCA-TGCTCAATCATCTTC 178
|||||||||||||||||||||||||||||||||||||||||||| | |||| || |||||
Sbjct 129 GCCGTCTTCGTCATCATCTCCGTGATTCTTTTGCCGATTGCTCAAT-CTCATTCTTCTTC 187
Query 179 GCCAGCTCCCGCACCCACCAGCGACGGAACATCGATAGATCAGGGGATAGCGTATGTTCT 238
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 188 GCCAGCTCCCGCACCCACCAGCGATGGAACATCGATAGATCAGGGGATAGCGTATGTTCT 247
Query 239 AATGATGGTGGCTTTGGCGTTGACTTATTTCATTCATTAACGTGATGGATCCGATC-ATT 297
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 248 AATGATGGTGGCTTTGGCGTTGACTTATTTCATTCATTGACGTGATGGATCCGATCTATT 307
Query 298 TTGTTCTTCCTCCACAATGGTTT-T-T---GT-GT-T------ACAATTCtttttttttt 344
| |||||||||||| |||||||| | | || || | ||||||||||| |||||
Sbjct 308 T-GTTCTTCCTCCATAATGGTTTGTCTTTCGTAGTGTTGTGTTACAATTCTTTTCTTTTT 366
Query 345 ttGGTTTGTGACGTGAGATTTGTAGAAAATCAAATTAGGTTTTGGTCCTCATGCTTTGTT 404
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 367 G-GGTTTGTGACGTGAGATTTGTAGAAAATCATATTAGGTTTTGGTCCTCATGCTTTGTT 425
Query 405 CTGTTTTTGTTGGTTGGATTATTCGTGTAACttttttttCTT-CTTGTTTAATGGAAATT 463
|||||||||||||||| |||||||||||| |||||||| ||| ||||| |||||||||
Sbjct 426 CTGTTTTTGTTGGTTGCATTATTCGTGTACCTTTTTTT-CTTTCTTGTGTAATGGAAAA- 483
Query 464 GTGTAATTATAAAAATTATTATTCAAGG 491
| |||||||||| |||||||||||||||
Sbjct 484 GCGTAATTATAATAATTATTATTCAAGG 511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23409112502
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5