BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495401
Length=1085
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53280.1 | Symbols: PDV1 | plastid division1 | chr5:21607507... 1666 0.0
> AT5G53280.1 | Symbols: PDV1 | plastid division1 | chr5:21607507-21609418
FORWARD LENGTH=1236
Length=1236
Score = 1666 bits (902), Expect = 0.0
Identities = 1027/1088 (94%), Gaps = 5/1088 (0%)
Strand=Plus/Plus
Query 1 ACAATTAAAGTGAAAATTTTCCTGAAGAAGAAGAACTTTTGCttttttt-tttCCCT-CT 58
||||||||||||| ||||||||||||||||||||||||||||||||||| | | ||
Sbjct 1 ACAATTAAAGTGAGAATTTTCCTGAAGAAGAAGAACTTTTGCTTTTTTTCTGGGTTTGCT 60
Query 59 TTTTTGGTGTGTCAATGAAATGGGAGAAATGGAGATCGAAGAAATCGAAGCTGTTCTTGA 118
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTTTGTTGTGTCAATGAAATGGGAGAAATGGAGATCGAAGAAATCGAAGCTGTTCTTGA 120
Query 119 GAAAATCTGGGATCTACATGACAAGCTTAGCGATGAGATTCACTTGATTTCGAAGTCTCA 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAAAATCTGGGATCTACATGACAAGCTTAGCGATGAGATTCACTTGATTTCGAAGTCTCA 180
Query 179 CTTTCTCAAATCGGTTAAACCTTCTAATAGATCGGAGAAGAGAAAGAATCCCCACGGCAA 238
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 181 CTTTCTCAAATCGGTTAAACCTTCAAATAGATCGGAGAAGAGAAAGAATCCTCACGGAAA 240
Query 239 TTCCGGCGAAGATAAGCGACCGGGTTATGTTTTCATCAAAGGATTCGCCGTAGATGATAA 298
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 241 TTCCGGCGAAGATAAGCGACCTGGTTATGTTTTCATCAAAGGATTCGCCGTCGATGATAA 300
Query 299 CGACTCCACGATTCAAGAGGCGAAGAGTCTTAACGCTATTCGAACCGCTCTTGAGAACCT 358
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 CGACTCCACGATTCAGGAGGCGAAGAGTCTTAACGCAATTCGAACCGCTCTTGAGAACCT 360
Query 359 TGAAGACCAGCTTGAGTTTTTCCATACTATACATACACAGCAACGAACAGAGAGAGATCT 418
|||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||| |
Sbjct 361 TGAAGACCAGCTCGAGTTTTTCCATACTATACATACACAGCAGCGAACAGAGAAAGATGT 420
Query 419 TGCAATTGCTCGGCTTGAGCAGAGCAGGATATTACTGGCAATGAGATTGGCTGAACACCA 478
||| |||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 421 TGCGATTGCTCGGCTTGAACAGAGCAGGATATTACTAGCAATGAGATTAGCTGAACACCA 480
Query 479 CGGCAAGAACTATGGAGTCTTAGAGGAAGCTCTTGCATTTGTTGGGAGCATTAAAACCAC 538
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 481 CGGCAAGAACTATGGAGTCCTAGAGGAAGCTCTTGCATTTGTTGGGAGCATTAAATCCAA 540
Query 539 CTCGCATTACGTTTCACCTGATCACCTCTACGATTCCTCTCCAAACCCAGACGGAGCAAA 598
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 541 CTCGCATTACGTTTCACCTGATCACCTCTACGATTCCTCTCGAAACCCAGACGGAGCAAA 600
Query 599 CTCTACACCTGCTGGAATAAAGTCAAACTTTGTGATCAACGCCTTTGCCTCAACTTTCGG 658
||||| || | ||||||| ||||||||||||| ||||||||||||||||| ||||||||
Sbjct 601 CTCTATTCCAGATGGAATAGAGTCAAACTTTGTAATCAACGCCTTTGCCTCGACTTTCGG 660
Query 659 GTTTGCAAAAAGAGCACTTGGATTCAACCATGTGAAAGGTGTACTTGGAAACGCTGCTAT 718
|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 661 GTTTGCCAAGAGAGCACTTGGATTCAACCATGTGAAAGGCGTACTTGGAAACGCTGCTAT 720
Query 719 ATTCGCCATTAGCATGGTCGCTATGCTACACCTTCACCAAGTGGCTACTAGTGAACATCA 778
||| ||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 721 ATTTGCCATAAGCGTGGTCGCTATGCTACATCTTCACCAAGTGGCTACTAGTGAACATCA 780
Query 779 TCTACAGAAGAAAGAAGACAGATTCTACAGAAGCCAACAGAGGAAAACATACGGAAGAGA 838
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 781 TCTGCAGAAGAAAGAAGACAGATTCTACAGAAGCCAACAAAGGAAAACATACGGAAGAGA 840
Query 839 TAAGTCTTCAGGTGACAGAAGTTTGGACCACTTGGACGTGATGATGGCTCGTGGTTAAGA 898
||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 841 TAAGTCTTCAGCTGACAGAAGTTTGGATCACTTGGACGTAATGATGGCTCGTGGTTAAGA 900
Query 899 CCAGGGATCAAACTTGTCTACACGTGAGAAAAACTAA-GAAGAGAAGAGATAATTGTTTG 957
|||| |||| |||||||||||||||||||||| |||| |||||||||||||||||||| |
Sbjct 901 CCAGAGATCGAACTTGTCTACACGTGAGAAAA-CTAAAGAAGAGAAGAGATAATTGTT-G 958
Query 958 CTCTCCTAGGTTTCGATATTATCAGTAAAGGGATAAGAATTTGGAGGCAAAGTGTTGGAA 1017
||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 959 CTCTCATAGGTTTCGATATTATCAGCAAAAGGATAAGAATTTGGAGGCAAAGTGTTGGAA 1018
Query 1018 TTTTCTGACCTCATCTGATGCAAATATTGTTCTTTTCTTCTCGTTTTGATTTTCAATCAC 1077
|||||||| ||| ||||||||||||||||||| |||||||| ||||||||||||| |||
Sbjct 1019 TTTTCTGAGCTCGTCTGATGCAAATATTGTTCCTTTCTTCTAATTTTGATTTTCAAACAC 1078
Query 1078 TGTGGTTA 1085
||||||||
Sbjct 1079 TGTGGTTA 1086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53162377155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5