BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495407
Length=1469
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53340.1 | Symbols: | Galactosyltransferase family protein ... 2032 0.0
AT5G53330.1 | Symbols: | Ubiquitin-associated/translation elon... 163 4e-39
> AT5G53340.1 | Symbols: | Galactosyltransferase family protein
| chr5:21640809-21643562 REVERSE LENGTH=1620
Length=1620
Score = 2032 bits (1100), Expect = 0.0
Identities = 1213/1266 (96%), Gaps = 13/1266 (1%)
Strand=Plus/Plus
Query 210 TGATTGCTTTGATTAAGAGATCTGATTTTGGATCTGTTTCAATGGCGAGGAAAGGATCGA 269
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 327 TGATTGCTTTGACTAAGAGATCTGATTTTGGATCTATTTCAATGGCGAGGAAAGGGTCGA 386
Query 270 GTATAAGATTATCGAGCTCGAGAATATCTTCCCTTTTGCT-TTCAATGTTTGCAACTTTT 328
|||||||||||||||||||||||||||| |||||||||| || |||||||||||||||
Sbjct 387 GTATAAGATTATCGAGCTCGAGAATATCAACCCTTTTGCTCTT-TATGTTTGCAACTTTT 445
Query 329 GCTTCCTTCTATGTAGCAGGCCGTTTATGGCAAGAATCTCAAACTAGGGTTCATCTAATC 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 GCTTCCTTCTATGTAGCAGGCCGTTTATGGCAAGAATCTCAAACTAGGGTTCATCTAATC 505
Query 389 AAGGAGCTCGATAGAGTAACCGGACAGGGAAAATCTGCTATATCAGTGGATGATACTTTG 448
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 506 AATGAGCTCGATAGAGTAACCGGACAGGGGAAATCTGCTATATCAGTGGATGATACTTTG 565
Query 449 AAGATCATAGCTTGCAGGGAACAGAAGAAGACATTAGCAGCTCTTGAGATGGAATTAAGT 508
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 566 AAGATCATAGCTTGCAGGGAACAGAAGAAGACACTAGCAGCTCTTGAGATGGAATTAAGT 625
Query 509 GCAGCAAGGCAAGAAGGCTTTGTTTCAAAAAGTCCCAAACTTACTGATGGAACTGAAACT 568
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 626 TCAGCTAGGCAAGAAGGCTTTGTTTCAAAAAGTCCCAAACTTGCTGATGGAACTGAAACC 685
Query 569 AAGAAAAGACCCTTAGTGGTTATCGGTATAATGACTAGTTTGGGTAACAAGAAGAAGAGG 628
||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 686 AAGAAAAGACCGTTAGTGGTTATCGGGATAATGACAAGTTTGGGTAACAAGAAGAAGAGG 745
Query 629 GATGCAGTTCGTCAAGCATGGATGGGGACGGGTGCATCACTaaaaaaaCTTGAAAGTGAA 688
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 746 GATGCAGTTCGTCAAGCATGGATGGGGACTGGTGCATCACTTAAAAAACTTGAAAGTGAA 805
Query 689 AAGGGTGTGATTGCACGATTTGTTATTGGAAGAAGTGCAAATAAAGGGGACAGCATGGAC 748
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 AAGGGTGTGATTGCAAGATTTGTTATTGGAAGAAGTGCAAATAAAGGGGACAGCATGGAC 865
Query 749 AAGAGCATTGATGCTGAAAATAGTCAAACCGATGACTTCATTATTCTCGATAATGTAGTT 808
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 866 AAGAGCATTGATACTGAAAATAGTCAAACCGATGACTTCATTATTCTCGATGATGTAGTT 925
Query 809 GAGGCACCCGAGGAAGCTTCTAAGAAGGTAAAACTGTTCTTTGCCTATGCTGCAGATAGG 868
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 926 GAGGCACCCGAGGAAGCTTCTAAGAAGGTAAAACTGTTCTTTGCCTACGCTGCAGATAGG 985
Query 869 TGGGATGCACAGTTTTATGCCAAGGCCATCGACAATATCTATGTAAATATAGATGCTCTG 928
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 986 TGGGATGCACAGTTTTATGCAAAAGCCATCGACAATATCTACGTAAATATAGATGCTCTG 1045
Query 929 GGAAGTACGCTTGCAGCACATCTGGAAAACCCACGGGCTTACATCGGTTGCATGAAATCA 988
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 GGAACTACGCTTGCAGCACATCTGGAAAACCCACGGGCTTACATCGGTTGCATGAAATCA 1105
Query 989 GGCGAAGTTTTCTCAGAACCGAACCACAAATGGTATGAACCAGAGTGGTGGAAATTCGGT 1048
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 GGCGAAGTCTTCTCAGAACCGAACCACAAATGGTATGAACCAGAGTGGTGGAAATTCGGT 1165
Query 1049 GACAAGAAAGCATACTTCCGGCATGCTTATGGGGAGATGTATGTTATAACACACGCATTG 1108
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1166 GACAAGAAAGCATACTTCCGGCATGCTTATGGGGAGATGTATGTTATAACGCACGCATTG 1225
Query 1109 GCTAGATTTGTATCGATCAATAGAGACATTCTTCATTCGTATGCTCATGATGACGTCAGC 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1226 GCTAGATTTGTATCGATCAATAGAGACATTCTTCATTCGTATGCTCATGATGACGTCAGC 1285
Query 1169 ACGGGTTCATGGTTCGTTGGTCTTGATGTTAAGCATGTAGATGAAGGAAAGTTCTGCTGT 1228
|||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1286 ACGGGTTCATGGTTTGTGGGTCTTGATGTTAAGCATGTAGATGAAGGAAAGTTTTGCTGT 1345
Query 1229 TCTGCGTGGTCCTCAGAAGCTATATGCGCAGGAGTGTAGTAGAACCAATGACGAATCCAA 1288
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1346 TCTGCGTGGTCCTCAGAAGCCATATGCGCAGGAGTGTAGTAGAACCAAAGACGAATCCAA 1405
Query 1289 AGTGCGAGGCT-TTG-CTCTTTGGTGCTTATAGAGAAAGAAGAACAAATGA--TCTGTCT 1344
|||| |||||| ||| ||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1406 AGTGTGAGGCTCTTGGCTCTTTGGTGCTTATAGAGAAAGAAGAACAAATGACATTTGTCT 1465
Query 1345 GA-GAAAGGCTAATTACACACTTGATTTTTTCTATGTATTCTAAACTTGCCATTTTATTG 1403
|| ||||| |||||||||| | |||| ||||||||||||||||||||||||||||||
Sbjct 1466 GAAGAAAG-CTAATTACAC-C---ATTTCATCTATGTATTCTAAACTTGCCATTTTATTG 1520
Query 1404 GCATTGCATTATACAAAAGTCTAGGATTTGGATGTGGGCTTAGATATTCTTACCGACAAA 1463
|||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1521 GCATTGCATTATACGAA-GTCTAGGATTTGGATGTGGGAATAGATATTCTTACCGACAAA 1579
Query 1464 CGTTAA 1469
||||||
Sbjct 1580 CGTTAA 1585
> AT5G53330.1 | Symbols: | Ubiquitin-associated/translation elongation
factor EF1B protein | chr5:21639217-21640963 FORWARD
LENGTH=932
Length=932
Score = 163 bits (88), Expect = 4e-39
Identities = 113/124 (91%), Gaps = 6/124 (5%)
Strand=Plus/Minus
Query 1346 AGAAAGGCTAATTACACACTTGATTTTTTCTATGTATTCTAAACTTGCCATTTTATTGGC 1405
||||| ||||||||||| | |||| ||||||||||||||||||||||||||||||||
Sbjct 930 AGAAA-GCTAATTACAC-C---ATTTCATCTATGTATTCTAAACTTGCCATTTTATTGGC 876
Query 1406 ATTGCATTATACAAAAGTCTAGGATTTGGATGTGGGCTTAGATATTCTTACCGACAAACG 1465
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 875 ATTGCATTATAC-GAAGTCTAGGATTTGGATGTGGGAATAGATATTCTTACCGACAAACG 817
Query 1466 TTAA 1469
||||
Sbjct 816 TTAA 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72439386435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5