BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495409
Length=1965
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53370.1 | Symbols: ATPMEPCRF, PMEPCRF | pectin methylestera... 3062 0.0
> AT5G53370.1 | Symbols: ATPMEPCRF, PMEPCRF | pectin methylesterase
PCR fragment F | chr5:21649532-21651593 REVERSE LENGTH=1978
Length=1978
Score = 3062 bits (1658), Expect = 0.0
Identities = 1868/1969 (95%), Gaps = 16/1969 (1%)
Strand=Plus/Plus
Query 1 AGAGCCTTCCACATCAT-CTTTGTTCCCATAACAAACTCTTCTAAACCaaaaaaaaaaaa 59
||||||||||||||| | |||||||||| ||||||| | |||||||| |||||||||||
Sbjct 1 AGAGCCTTCCACATC-TCCTTTGTTCCCTTAACAAA--C-TCTAAACC-AAAAAAAAAAA 55
Query 60 aaaaCACGACAATGGGTTACGATAGGCTCGGTCCATCCGGACCATCAGACCCGAACCAGA 119
|||| | || ||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 56 AAAA-A--ACTATGGGTTACGACAGGCTCGGTCCATCCGGACCATCAAACCCGAACCAGA 112
Query 120 A-GATCCCTGCCACGTCAGTCCCGGAGCTACAGAAGAAAACTAAAACGAAGCTGATTCTC 178
| || ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 113 AGGA-CCCTGCCACGTCACTCCCGGAACTACAGAAGAAAACTAAAACGAAGCTGATTCTC 171
Query 179 TTCACTTTGGCCGTTTTAGTCGTTGGAGTGA-TCTGCTTCGGTATCTTTGCCGGCATCCG 237
||||||||||||||||| || |||||||| | ||||||||||||||||||||||||||||
Sbjct 172 TTCACTTTGGCCGTTTTGGTAGTTGGAGT-AGTCTGCTTCGGTATCTTTGCCGGCATCCG 230
Query 238 AGCCGTAGGCTCGGGCAAAACCGAACCAAAACTAACCCGTAAACCGACCCAAGCAATCTC 297
|||||||| |||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 231 AGCCGTAGACTCGGGTAAAACCGAGCCGAAACTAACCCGTAAACCGACCCAAGCAATCTC 290
Query 298 CCGAGCCTGTAGCAAATCCTTATACCCGAACCTATGTATCGACACACTTCTTGATTTTCC 357
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 291 CCGAACCTGTAGCAAATCCTTATACCCGAACCTATGCATCGACACACTTCTTGACTTTCC 350
Query 358 GGGATCTTTAACCGCCGACGAGAACGAACTCATTCACATATCATTCAACGCAACGCTTCA 417
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 351 GGGATCTTTAACCGCCGACGAGAACGAGCTCATTCACATATCATTCAACGCAACGCTTCA 410
Query 418 AAGATTCAGCAAAGCTCTATATACTTCTTCGACGATCACATACACTCAGATGCCGCCACG 477
|| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 411 AAAATTCAGCAAAGCTCTTTATACTTCTTCGACGATCACATACACTCAGATGCCCCCACG 470
Query 478 TGTACGGTCAGCTTACGATTCTTGCCTTGAGTTACTTGATGATTCAGTCGACGCGCTAAC 537
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 471 TGTACGGTCAGCTTACGATTCTTGCCTTGAGTTACTTGATGATTCAGTGGACGCGCTCAC 530
Query 538 ACGCGCTCTCTCCTCCGTCGTTGTTGTCTCCGGAGATGAGTCTCATTCCGATGTGATGAC 597
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 531 ACGCGCTCTTTCCTCCGTCGTTGTCGTCTCCGGAGATGAGTCTCATTCCGATGTGATGAC 590
Query 598 GTGGCTTAGCTCTGCCATGACCAACCACGACACTTGCACTGACGGATTTGATGAAATTGA 657
||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 591 GTGGCTTAGCTCTGCGATGACTAACCACGACACTTGCACTGACGGATTCGATGAAATTGA 650
Query 658 AGGTCAAGGAGGAGGAGTGAAGGATCAAGTGATCGGAGCGGTTAAAGATTTATCGGAGAT 717
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 651 AGGTCAAGGAGGAGAAGTGAAGGATCAAGTGATCGGAGCGGTTAAAGATTTGTCGGAGAT 710
Query 718 GGTGAGTAACTGTTTGGCGATATTCGCCGGAAAAGTTAAAGATTTGTCTGGAGTTCCGGT 777
||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 711 GGTGAGTAATTGTTTGGCTATATTCGCCGGAAAAGTTAAGGATTTATCTGGAGTTCCGGT 770
Query 778 GGTGAATAATAGGAAGTTACTTGGGACTGAAGAAACAGAGGAATTACCTAATTGGTTGAA 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 GGTGAATAATAGGAAGTTACTTGGGACTGAAGAAACAGAGGAATTACCTAATTGGTTGAA 830
Query 838 GAGAGAAGACAGAGAGCTTCTTGGTACTCCGACGTTGGCGATTCAAGCTGATATTACGGT 897
|||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||
Sbjct 831 GAGAGAAGACAGAGAGCTTCTTGGTACTCCAACGTCGGCGATTCAAGCTGATATCACGGT 890
Query 898 ATCGAAAGACGGTAATGGAACGTTTAAGACGATCGCGGAAGCGATCAAGAAAGCTCCGGA 957
||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 891 GTCGAAAGACGGTAGCGGAACGTTTAAGACGATCGCGGAGGCGATCAAGAAAGCCCCGGA 950
Query 958 GCATAGTAGCCGTA-GATTCGTCATCTACGTTAAATCAGGAAGATACGAAGAAGAGAATC 1016
|||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 951 GCATAGTAGCCG-ACGATTCGTCATCTACGTTAAAGCAGGAAGATACGAAGAAGAGAATC 1009
Query 1017 TGAAAGTTGGGAGGAAGAAGACAAACTTGATGTTCATCGGTGACGGCAAGGGTAAAACGG 1076
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1010 TGAAAGTTGGTAGGAAGAAGACAAACTTGATGTTCATCGGGGACGGCAAGGGTAAAACGG 1069
Query 1077 TCATAACCGGTGGAAAAAGCATTGCCGATGATCTAACTACTTTTCACACCGCAACTTTCG 1136
||||||||||||| ||||| || ||||||||||||||||||||||||||||| |||||||
Sbjct 1070 TCATAACCGGTGGGAAAAGTATCGCCGATGATCTAACTACTTTTCACACCGCCACTTTCG 1129
Query 1137 CTGCGACTGGTGCTGGATTTATAGTGAGGGACATAACGTTTGAGAATTACGCCGGACCGG 1196
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1130 CTGCGACTGGTGCTGGATTTATAGTGAGGGACATGACGTTTGAGAATTACGCCGGACCGG 1189
Query 1197 CTAAGCATCAGGCCGTGGCACTCCGTGTTGGTGGAGACCACGCGGTGGTTTACCGTTGCA 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 CTAAGCATCAGGCCGTGGCACTCCGTGTTGGTGGAGACCACGCGGTGGTTTACCGTTGCA 1249
Query 1257 GCATAATCGGTTACCAAGACGCTCTTTATGTACATTCTAACCGACAGTTTTTTCGCGAAT 1316
||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 1250 ACATTATCGGTTACCAAGACGCGCTTTACGTACATTCTAACCGACAGTTTTTCCGCGAAT 1309
Query 1317 GCGAAATTTATGGAACGGTCGATTTTATATTCGGGAATGCAGCTGTGATATTACAGAGTT 1376
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1310 GCGAAATTTATGGAACGGTCGATTTTATATTCGGGAATGCGGCTGTGATCTTACAGAGTT 1369
Query 1377 GTAACATCTATGCGCGTAAACCGATGGCTCAGCAGAAGATTACTATCACGGCTCAGAACC 1436
||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1370 GTAACATTTATGCGCGTAAACCAATGGCTCAGCAGAAGATTACTATTACGGCTCAGAACC 1429
Query 1437 GAAAAGATCCGAATCAGAACACGGGGATTTCGATCCATGCGTGTAAGCTACTAGCTACGC 1496
||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| || |
Sbjct 1430 GAAAAGATCCGAATCAGAATACGGGGATTTCGATTCATGCTTGTAAGCTACTAGCAACAC 1489
Query 1497 CGGATCTTGAAGCCTCTAAGGGTAGTTATCCGACTTATCTCGGCCGTCCGTGGAAGTTGT 1556
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1490 CGGATCTTGAAGCCTCTAAGGGTAGTTATCCGACGTATCTCGGCCGTCCGTGGAAGTTGT 1549
Query 1557 ATTCTAGAGTTGTGTACATGATGTCGGATATGGGCGACCATATTGACCCGCGAGGATGGT 1616
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1550 ATTCTAGAGTTGTGTACATGATGTCGGATATGGGTGACCATATTGACCCGCGAGGATGGT 1609
Query 1617 TGGAGTGGAACGGTCCGTTTGCATTGGACTCATTGTACTATGGTGAGTATATGAACAAAG 1676
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1610 TGGAGTGGAATGGTCCGTTTGCATTGGACTCGTTGTACTATGGTGAGTATATGAACAAAG 1669
Query 1677 GGCCGGGTTCAGGAATGGGTCAACGAGTCAAGTGGCCGGGTTATCATGTTATTACCTCAA 1736
|| |||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1670 GGTTGGGTTCAGGAATTGGTCAACGAGTCAAATGGCCTGGTTATCATGTTATTACCTCAA 1729
Query 1737 CCGTAGAGGCTAGCAAGTTTACGGTGGCTCAGTTCATTTCTGGTTCTTCGTGGTTGCCAT 1796
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1730 CGGTAGAGGCTAGTAAGTTTACGGTGGCTCAGTTCATTTCTGGTTCTTCGTGGTTGCCAT 1789
Query 1797 CAACCGGCGTGGCCTTCTTCTCCGGGTTGTCACAATAGACTGCCTCGGCCTTGTATGTAA 1856
| ||||| ||| ||||||||||||||||||||||||||| || ||| ||||||||||| |
Sbjct 1790 CCACCGGTGTGTCCTTCTTCTCCGGGTTGTCACAATAGATTGTCTCAGCCTTGTATGTTA 1849
Query 1857 CGTATACGAAAGATTTTATGAACAAACTCAAGATTTGTAATATAGTCCATAAGCCATTTT 1916
|||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1850 CGTATACGAATGATTTTATGTACAAACTCAAGATCTGTAATATAGTCCATAAGCCATTTT 1909
Query 1917 AAGTGTACTTATTGTAATGACAGGACATCTTCTTGAATGAAATAAAGAT 1965
||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1910 AAGTGTACTTATTATA-TGACAGGACATCTTCTTGAATGAAATAAAGAT 1957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97338856755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5