BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495410
Length=1446
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53380.1 | Symbols: | O-acyltransferase (WSD1-like) family ... 1781 0.0
> AT5G53380.1 | Symbols: | O-acyltransferase (WSD1-like) family
protein | chr5:21654601-21656539 FORWARD LENGTH=1452
Length=1452
Score = 1781 bits (964), Expect = 0.0
Identities = 1280/1428 (90%), Gaps = 40/1428 (3%)
Strand=Plus/Plus
Query 1 ATGACGAAGG-AGAAAGTAGAGGAGGAGCCTCTCAGCCCGATGGCTCGGCTATTCCAATC 59
|||||||||| || ||||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct 1 ATGACGAAGGAAG-AAGTAGAGGAGGAGCCTCTAAGCCCGATGGCTCGGTTATTCCAGTC 59
Query 60 GCCGGGGATAGACAATTGCATTGTCACGATGATCGGTTTCAAGGCCAAGATTAATCGTGA 119
||||||||||| ||||||||| |||||||||| |||||||| ||||||||||||| |||
Sbjct 60 ACCGGGGATAGAAAATTGCATTATCACGATGATTGGTTTCAAAGCCAAGATTAATCCTGA 119
Query 120 CATCATTCTAGATGAATTGAAGCAAAACGTTTCCAAGCATCCTCGTTTCTGTAGT--A-- 175
||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
Sbjct 120 CATCATTCTAGATGACTTGAAGCATAACGTTTCCAAGCATCCTCGTTTCTGTAGTAAATT 179
Query 176 ---AACTG-------T-C--A-GATGATGGTGCA-AGATGGATGAAAATAAAAGTCAATG 220
|| || | | | ||||||||| | ||||||||||| | ||||||||||
Sbjct 180 GGTAATTGCCACACATACAAATTATGATGGTG-AGAGATGGATGAAGACCAAAGTCAATG 238
Query 221 TAGAAGACCATGTATTTGCACCAGACATAGACCCACAAGAGATCAACAAAGATGGAGATA 280
|||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||
Sbjct 239 TAGAAGACCATGTATTTGTACCAGACATAGACCTACAAGAGATTAACAAAGATGGAGATG 298
Query 281 GTTTCGTGGATGACTATGTCTCTCGTCTAACGCTT-ATTCCTCTCGATAAATCAAAACCA 339
| ||||| |||||||||||||| |||||||| || | ||||||||||||||| ||||||
Sbjct 299 GCTTCGTCGATGACTATGTCTCGCGTCTAAC-ATTGAGTCCTCTCGATAAATCGAAACCA 357
Query 340 TTGTGGGATATTCACATCCTCAATGTCAAAACATCTGATGCAGAAGCGGTTGGTGTAATG 399
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 358 TTGTGGGATATTCATATCCTCAATGTCAAAACATCTGATGCAGAAGCGGTCGGTGTAATG 417
Query 400 AGATGTCATCATTCTTTGGCAGATGGAATGTCCTTGATGTCTCTCTCGGTGGCGTTTACC 459
||||||||||||||||||||||||||||||||||||||||| |||| |||||| | ||||
Sbjct 418 AGATGTCATCATTCTTTGGCAGATGGAATGTCCTTGATGTCACTCTTGGTGGCATGTACC 477
Query 460 CGAAAAACATCAGATCTTGAGGCATTTCCTACCATTCCTGCCATAAAACGGCGTGAACAA 519
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 478 CGAAAAACATCAAATCTTGAGTCATTTCCTACCATTCCTGCCATAAAACGGCGTGAACAA 537
Query 520 ATTATGTCACAACGTCTT-GGAAACAAAGGATGGCTTTT-AAGATGGATATTCGCAATTT 577
|| ||||| || || ||| ||||||||||| ||| | || ||||| |||| |||| |||
Sbjct 538 ATGATGTCGCATCG-CTTTGGAAACAAAGGCTGG-TATTCAAGATCGATAAACGCAGTTT 595
Query 578 ACTT-TGCGGTTAGATTGATTTGGAATACCATTGTAGATCTTCTATTGCTCTTGG-CGAC 635
| || ||| || ||||| ||||||||||| ||||| ||||||||| |||| |||| ||||
Sbjct 596 A-TTATGCCGTGAGATTAATTTGGAATACAATTGTGGATCTTCTACTGCT-TTGGGCGAC 653
Query 636 TA-TAATGTTTCTGAAGGATACAGAGACGCCTCTTAACGAGGGTGCCAGTGTC-GGGAAT 693
|| | | ||| | |||||||||||||||||| ||| ||||||| | || ||||||
Sbjct 654 TAGTCTTTTTTTT-AAGGATACAGAGACGCCTATTAGCGAGGGTATTGGA-TCCGGGAAT 711
Query 694 AATGCAAGAAGATTTTATCACCGAACTATCTCATTGGATGATATTAAGCTTATAAAGAAC 753
|||||||| ||||||||||||||||| ||||||||||||||||||| || ||||| ||
Sbjct 712 AATGCAAGGAGATTTTATCACCGAACCGTCTCATTGGATGATATTAAACTGATAAAAAAT 771
Query 754 GCTATGAACATGACTATCAATGATGTTCTACTCGGAGTTACACAAGCCGCTCTCTCCCGC 813
|||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 772 GCTATGAAGATGACTATCAATGATGTTCTACTTGGAGTTACACAAGACGCTCTCTCCCGC 831
Query 814 TAT-TTGAACCAGCGATATGGCGACAAAGATGGTGAGGATGGAACAACGACATCGGATCT 872
||| || ||||||||||||||||||||| ||||||||| || ||||||||||||| ||||
Sbjct 832 TATCTT-AACCAGCGATATGGCGACAAAAATGGTGAGGGTGTAACAACGACATCGAATCT 890
Query 873 AAACAATCTTCCAGGTGAAATACGAATTCGAGCAGGTGTTGCGGTTAATCTAAGGCAGGA 932
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 891 AAACAATCTTCCAGGTAAAATACGAATTCGAGCAGGTGTTGCGGTAAATCTAAGGCAGGA 950
Query 933 TATTGGAATCCAGCCTGTGGAGGATATGTTGGCCAAGGGTTCGAAATGTAGATGGGGAAA 992
||||||||| |||||| ||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 951 TATTGGAATTCAGCCTTTGGAGGACATGTTGGCCAAGGATTCGAAATGTAGATGGGGAAA 1010
Query 993 TTATGACTCCTTAGTTTTTGTTCCGCTCTCCATCAGTTTAGAAATCGATCCATTGGTTCC 1052
|||||| ||||||||||||||||| ||||||| ||||| |||| |||||||||||||||
Sbjct 1011 TTATGATTCCTTAGTTTTTGTTCCATTCTCCATAAGTTTGGAAACCGATCCATTGGTTCC 1070
Query 1053 TCTATTAAAAGCTAAATCAATAATGGATCGAAAGAAGCATTCTCATTG-CGCCGCTATGC 1111
| ||||||||||||||||||||||||||||||||||||| |||| ||| |||| ||||||
Sbjct 1071 TTTATTAAAAGCTAAATCAATAATGGATCGAAAGAAGCACTCTC-TTGTCGCCCCTATGC 1129
Query 1112 ATTATTCAGTCCTCGAGTTTATCATCAATACTTTCGGACCTAAGGTATTCAAACGAACAT 1171
|||||||| || |||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1130 ATTATTCAATCATCGAGTTTATCATCAATACTTTCGGAACTAAGGTATTCAACCGAACAT 1189
Query 1172 GTTCGAATACAACAACAATCTTATCAAACATCGTTGGCCCTGTGGAAGAAGTTAGTTTAC 1231
||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1190 GTTCGAACACAACAACAATCTTATCAAACATTGTTGGCCCCGTGGAAGAAGTTAGTTTAC 1249
Query 1232 ACGGAAATTGTATCACTTACATCGCTCTAAGTGGCTATGGACACTCGCAAGCCCTGATGA 1291
|||| ||||||||||||||||| ||||||| |||||||||||||||||||| |||||||
Sbjct 1250 ACGGCAATTGTATCACTTACATTGCTCTAACCGGCTATGGACACTCGCAAGCACTGATGA 1309
Query 1292 TACATTTCATAAGTTACGGGAAGAAAATGGTAATTACGATAGCGGTCGATCCTGCGGTCA 1351
|||||||||||||||||| ||| || ||| ||||||||||||| ||||||||||||||||
Sbjct 1310 TACATTTCATAAGTTACGCGAACAAGATGATAATTACGATAGCCGTCGATCCTGCGGTCA 1369
Query 1352 TACCAGATCCTCACAATATTTGCGATGAAATGGAGAAGTCTTTGAAAG 1399
|||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1370 TACCAGATCCTCACAATATTTGTGATGAAATGGAAAAGTCTTTGAAAG 1417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71284773900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5