BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495412
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53400.1 | Symbols: BOB1 | HSP20-like chaperones superfamily... 1295 0.0
> AT5G53400.1 | Symbols: BOB1 | HSP20-like chaperones superfamily
protein | chr5:21661445-21663572 FORWARD LENGTH=1247
Length=1247
Score = 1295 bits (701), Expect = 0.0
Identities = 925/1024 (90%), Gaps = 51/1024 (5%)
Strand=Plus/Plus
Query 1 AAACATCCCATTTCTTGATTTCCCTCCGTTGTTTGTCACAAACCCAACAAAGTAGACCAA 60
||||||||||||||||||||||||| | |||||| |||||||||||||||||| |||
Sbjct 67 AAACATCCCATTTCTTGATTTCCCT-C----TTTGTCGCAAACCCAACAAAGTAGAGCAA 121
Query 61 AACCCTAAAAC-GAAACCTCCCATGGCGATTATCTCTGAGGTAGAAGAAGAAAGCAGCAG 119
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 122 AACCCTAAAACGGAAACCTTCCATGGCGATTATCTCTGAGGTAGAAGAAGAAAGCAGTAG 181
Query 120 CAGCCGACCCAGGATGTTGCCGTTTAGGGCAGTACTCGA-TTCTTCAAACCCATTAGGGT 178
||||||||||| ||| || || ||||||||| |||| | |||| |||||||||||||||
Sbjct 182 CAGCCGACCCATGATATTTCCCTTTAGGGCAACACTC-AGTTCTGCAAACCCATTAGGGT 240
Query 179 TTTTGGAGAAAGTTTTCGACTTTCTTGGAGAACAGAGCGATTTTCTCAAGAAACCCTCCG 238
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 TTTTGGAGAAAGTTTTCGACTTTCTCGGAGAACAGAGCGATTTTCTCAAGAAACCCTCCG 300
Query 239 CGGAGCAGGAGATCGCCGTCGCGGTTAGGGCGGCGAAGgagaag-t---------t--ga 286
||||| | ||||||| |||||||||||||||||||||||||||| | | ||
Sbjct 301 CGGAGGACGAGATCGTCGTCGCGGTTAGGGCGGCGAAGGAGAAGTTGAAAAAGGCTGAGA 360
Query 287 agaagaaagctgagaaagagattgttaagcctgtggagaagaaagctgagaagGAGACTG 346
|||||||||||||||| |||| ||| |||||||||||||||||||| |||||||| | ||
Sbjct 361 AGAAGAAAGCTGAGAAGGAGAGTGTGAAGCCTGTGGAGAAGAAAGCCGAGAAGGAAATTG 420
Query 347 TTAAGCCTGTGGAGAGGAAGGTAGAGAAGGAGAGTGTTAAGCCTGTGGAGAAGGAGAGTG 406
||||| || | || | | | || | | ||| || |||||||||||||
Sbjct 421 TTAAG-CT-T----------GT-G-G-A-GA-A--G--AAG---GTAGAGAAGGAGAGTG 456
Query 407 TCAAGCCGACTGTGGCTACTTCAAGTGCTGAGCCTATGGAAGTGGAGAAGCCTAAGGA-G 465
||||||| ||| | ||| ||||||||||||||||||| |||||||||||||||||||| |
Sbjct 457 TCAAGCCAACTATAGCTGCTTCAAGTGCTGAGCCTATAGAAGTGGAGAAGCCTAAGGAGG 516
Query 466 --GAGGAGAAGAAGGAATCTGGTCCCATTGTTCCTAACCAAGGTAATGGAACTGATCTTG 523
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 517 AAGAGGAGAAGAAGGAATCTGGTCCCATTGTTCCTAACAAAGGTAATGGAACTGATCTTG 576
Query 524 AGAACTACTCATGGGTCCAGAATCTCCAGGAGGTCACAGTTAACATTCCAGTGCCTATTG 583
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 577 AGAACTACTCATGGATCCAGAATCTCCAGGAGGTTACAGTTAACATTCCAGTGCCTACTG 636
Query 584 GGACTAAAGCACGGTCTGTTGTATGTGAGATTAAGAAGAACCGTCTCAAGGTTGGTCTCA 643
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 637 GGACTAAAGCACGGACTGTTGTATGTGAGATTAAGAAAAACCGTCTCAAGGTTGGTCTCA 696
Query 644 AAGGCCAGGATCCAATCATCGATGGAGAGCTCTATCGATCTGTGAAGCCTGATGACTGCT 703
||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||
Sbjct 697 AAGGCCAGGATCCAATCGTCGATGGGGAGCTCTACCGATCTGTGAAGCCTGATGACTGCT 756
Query 704 ACTGGAATATCGAGGATCAAAAGATGATTTCGATTCTGTTGACTAAG-CATGATCAGATG 762
||||||||||||||||||||||| ||||||||||||| ||||||||| | ||||||||||
Sbjct 757 ACTGGAATATCGAGGATCAAAAGGTGATTTCGATTCTCTTGACTAAGTC-TGATCAGATG 815
Query 763 GAGTGGTGGAAATGCTGTGTGAAAGGCGAACCTGAAATCGATACTCAGAAAGTTGAACCA 822
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 816 GAGTGGTGGAAATGCTGTGTGAAAGGTGAACCTGAAATCGATACTCAGAAAGTTGAACCA 875
Query 823 GAGACCAGTAAATTAGGTGACCTTGACCCAGAAACTCGC-CAGACTGTTGAGAAAATGAT 881
||||| |||||||||||||||||||| |||||||||||| | ||||||||||||||||||
Sbjct 876 GAGACTAGTAAATTAGGTGACCTTGATCCAGAAACTCGCTC-GACTGTTGAGAAAATGAT 934
Query 882 GTTCGATCAAAGGCAAAAGCAAATGGGTCTTCCAACAAGCGACGAGCTACAGAAGCAAGA 941
||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 935 GTTTGATCAAAGGCAAAAGCAGATGGGTCTTCCAACAAGCGAGGAGCTACAGAAGCAAGA 994
Query 942 GATTCTCAAGAAATTCATGTCTGAGCATCCAGAGATGGACTTCTCAAACGCAAAGTTTAA 1001
||| || ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 995 GATCCTTAAGAAATTCATGTCTGAGCATCCGGAGATGGACTTCTCAAATGCAAAGTTTAA 1054
Query 1002 CTGA 1005
||||
Sbjct 1055 CTGA 1058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49229464060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5