BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495414
Length=1158
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53420.1 | Symbols: | CCT motif family protein | chr5:21673... 1736 0.0
AT4G27900.1 | Symbols: | CCT motif family protein | chr4:13890... 198 9e-50
> AT5G53420.1 | Symbols: | CCT motif family protein | chr5:21673525-21675733
FORWARD LENGTH=1217
Length=1217
Score = 1736 bits (940), Expect = 0.0
Identities = 1114/1190 (94%), Gaps = 43/1190 (4%)
Strand=Plus/Plus
Query 1 AAGGCAAGAGGAGAGCTAAGTACCAAACTTTTTCCCTCAGGGTTTTCCTCTCAAATTCAC 60
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||| || |
Sbjct 1 AAGGCAAGAGGAGAGCCAAGTACCAAACTTTTTCCTTCAGGGTTTTCCTCTCAAAATCCC 60
Query 61 AACTTGGCCTCTGTTTTTCGTTTTGGCTTTCTTTATGTTCTCTTCTTCTCTAAAAACTCA 120
|||||||||||||||||| | ||| | | |||||||||||||||||||||||||| ||
Sbjct 61 AACTTGGCCTCTGTTTTT-GCTTT--C--T-TTTATGTTCTCTTCTTCTCTAAAAAC-CA 113
Query 121 TTTCCTACTTCCAAGAATTTCTCTCACAAAGACCAAGAACTTGAAATGTATCAAGATTCT 180
| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 114 TCTCATACTTCCAAGAATTTCTCTCACAAAGACCAAGAACTCAAAATGTATCAAGATTCT 173
Query 181 GGATTAATGATCCGTTACATGCAAAACTGTTCCCCAGATATTCAACAATTCGAAGACCTC 240
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 174 GGATTAATGCTCCGTTACATGCAAAACTGTCCCCCAGATATTCAACAATTCGAAGACCTC 233
Query 241 TTCAAATCATACAAACTCTCCGATGAAATGAACAACACTTTTGTTGAGTCATCAAACATA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 TTCAAATCATACAAACTCTCCGATGAAATGAACAACACTTTTGTTGAGTCATCAAACATA 293
Query 301 TCTGAGTATGATATTGGAGTAGAAGGTGATCTTTTTAAAGCTCCTGATCCAATTCTTGAA 360
||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct 294 TCTGAGTATGATATTGGAGAAGAAAGTGATCTTTTTAGAGCTCCTGATCCAATTCTTGAA 353
Query 361 GAACAAATCTTA-CCTGTTGATCCACTCTCTGCTGTTTTGACTATGATCTCTTGTGGTGA 419
|||| ||||||| || ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 354 GAACCAATCTTAACC-GTTGATCCACTCTCTGCTGCTTTGACTATGATCTCTTGTGGTGA 412
Query 420 AGACACTTCACAAGGTCTTTGTGAGCTTCCTGATCTTGGTTCATTGCAGAGTGGTCAACA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 AGACACTTCACAAGGTCTTTGTGAGCTTCCTGATCTTGGTTCATTGCAGAGTGGTCAACA 472
Query 480 GCTTCTTGACAAAGCTTTTTATGAATGTGAGCAAGATCTCATGATGAAATCAGCTATGGA 539
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 473 GCTTCTTGACAAAGCTTTTTATGAATGTGAGCAAGATCTTATGATGAAATCAGCTATGGA 532
Query 540 GTCTCCATTCTCTGATGTTTTAGACATCAAGAACATCTCTGTTGTGACGACAATCAATGA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 GTCTCCATTCTCTGATGTTTTAGACATCAAGAACATCTCTGTTGTGACGACAATCAATGA 592
Query 600 GAACCAAGATATGCAGAAGAGCGTTAGCTCGGGGAATTTGAGCTCTATGGATTGGTCACA 659
|||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 593 GAACCAGGATATGCAAAAGAGTGTTAGCTCGGGGAATTTGAGCTCTATGGATTGGTCACA 652
Query 660 TGCACAGCAAGAGACTGTAATGATTCAGAATTTTCCTGATTTCGATTTTGGTTATGGGAT 719
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 653 TGCACAACAAGAGACTGTAATGATTCAGAATTTTCCTGATTTCGATTTTGGTTATGGAAT 712
Query 720 GCGAAGAGCCTTTAGTGAAGGCGACATACAG------G-------TCTTGTCCA-TCTCC 765
||||||||||||||||||||||||||||||| | |||||| || |||||
Sbjct 713 GCGAAGAGCCTTTAGTGAAGGCGACATACAGAAACTTGGGGCAGGTCTTGTTCAATCTCC 772
Query 766 A-TGGATAGGATTATTGTGAGCTGTACTTCAGAGGATCGCCGTGAGAAGCTTTCTCGATA 824
| | |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 773 ACTAGATAGGATTATTGTGAGCTGCACTTCAGAAGATCGCCGTGAGAAGCTTTCTCGATA 832
Query 825 CAAGAACAAGAAGAGCAGACGAAATTTCGGGCGTAAAATCAAGTATGCTTGCAGGAAAGC 884
|||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 833 CAAGAACAAGAAGAGCAGGCGAAATTTCGGGCGTAAGATTAAGTATGCTTGCAGGAAAGC 892
Query 885 TCTTGCAGATAGCCAACCTAGAGTCCGAGGAAGGTTTGCGAAAACAGAGGAGAGGAAATA 944
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 893 TCTTGCAGATAGCCAACCGAGAGTCCGAGGAAGGTTTGCGAAAACAGAGGAGAGGAAATA 952
Query 945 GAATGGTTCaaaaaaaGGGCTCAAAGGGAGGAGACTAAGCAAAAGGAAGAAAC-T-A-GA 1001
||||||||||| ||||||||||||||| ||||||||||||||||||||||||| | | ||
Sbjct 953 GAATGGTTCAAGAAAAGGGCTCAAAGGAAGGAGACTAAGCAAAAGGAAGAAACATGAAGA 1012
Query 1002 A---G-A-A-----CCCATCTCATTAGAAACTAGTTTTGTTTTATA-ATCTATGTATAAA 1050
| | | | |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1013 ATAAGGAGATAAAGCCCATCTCATTAGAAACTAGTTTTGTTTTATATATCTATGTATAAA 1072
Query 1051 ACTTTAAAATCTTATAAGCATCCAATGAGTTTTT-GTATATAAAGGGTTTCTCTAAATAA 1109
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1073 -CTTTAAAATCTTATAAGCATCCAATTAGTTTTTTGTATATAAAGGGTTTCTCTAAATAA 1131
Query 1110 GCTTTTAAGTAAAGAAATTGTAGCTAAA-AAATGTTTGTATTATTGTAGT 1158
||||| |||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1132 GCTTT-AAGTAAAGAAATTGTAGCTAAAGAAA-GTTTGTATTATTGTAGT 1179
> AT4G27900.1 | Symbols: | CCT motif family protein | chr4:13890644-13892995
FORWARD LENGTH=1218
Length=1218
Score = 198 bits (107), Expect = 9e-50
Identities = 169/198 (85%), Gaps = 8/198 (4%)
Strand=Plus/Plus
Query 745 ATACAGGTCTTGTCCA-TCTCCA--TGGATAGGATTATTGTGAGCTGTACTTCAGAGGAT 801
|||| |||||||| || ||| || ||||| | || || | || || || || |||||
Sbjct 795 ATACGGGTCTTGTTCAGTCT-CAGTTGGATCGAATAATCATAAGTTGCACCTCTGAGGAC 853
Query 802 CGCCGTGAGAAGCTTTCTCGATACAAGAACAAGAAGAGCA-GACGAAATTTCGGGCGTAA 860
||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||
Sbjct 854 CGCCGTGAGAAGCTTTCTCGATACAGGAACAAGAAGAGCAAG-CGAAATTTCGGGCGTAA 912
Query 861 AATCAAGTATGCTTGCAGGAAAGCTCTTGCAGATAGCCAACCTAG-AGTCCGAGGAAGGT 919
||||||||||||||| ||||| || |||||||| || ||||| || | ||||||||||||
Sbjct 913 AATCAAGTATGCTTGTAGGAAGGCACTTGCAGACAGTCAACCGAGGA-TCCGAGGAAGGT 971
Query 920 TTGCGAAAACAGAGGAGA 937
|||| |||||||||||||
Sbjct 972 TTGCAAAAACAGAGGAGA 989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56827016940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5