BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495417
Length=2330
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53450.1 | Symbols: ORG1 | OBP3-responsive gene 1 | chr5:216... 3561 0.0
> AT5G53450.1 | Symbols: ORG1 | OBP3-responsive gene 1 | chr5:21688773-21692429
FORWARD LENGTH=2383
Length=2383
Score = 3561 bits (1928), Expect = 0.0
Identities = 2217/2351 (94%), Gaps = 41/2351 (2%)
Strand=Plus/Plus
Query 1 TCGAGGCGCGATGCCTCAGGCGTACTTCATCACGCAACTCTCACGAGCTTCTCTGTCGTT 60
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1 TCGAGGCGCGATGCCTCAGGCGTACTTCATCACGCAACTATCACGAGCCTCTCTGTCGTT 60
Query 61 ATATACGACTTTCTA-TTTTTCTTCTGATTTTCGAAAGAATCAAAC--TT---T-TGAA- 112
||||||||||||| | ||||||||||||||| ||||||||||||| || | ||||
Sbjct 61 ATATACGACTTTC-AGTTTTTCTTCTGATTTGGGAAAGAATCAAACTTTTGAATGTGAAG 119
Query 113 ----TTC-TTCGTCTCGAGATCTCTCTTTATCTCTCTATCTGTTTGATTGAGGGTTTTTG 167
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTGCTTCTTTCGTCTCAAGATCTCTCTTTATCTCTCTATCTGTTTGATTGAGGGTTTTTG 179
Query 168 TTGGATGGCACTTTGTGGTGTTTGTTCGACTCCAAATCTACCGAATTTGCAAGTGTTTCG 227
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 180 TTGGATGGCACTTTGTGGTGTTTGTTCGACTCCAAATCTGCCGAATTTACAAGTGTTTCG 239
Query 228 TTCTGTTAGAAACTCGAGCATTGGTT-TGAAACGAAACCATAGTCTACGGCAGTC-CACA 285
||||||||| |||||||||||||||| | |||||||||||||||||| ||||| | || |
Sbjct 240 TTCTGTTAGGAACTCGAGCATTGGTTAT-AAACGAAACCATAGTCTATGGCAG-CTCAGA 297
Query 286 AG-T--TCATTTCGTGCAAAAGATGTGAGATTTAATTGTTCATCCTCCTTAAGACCGTCA 342
|| | ||||||||||| ||| ||||| |||| |||||||||| |||||||||| ||||
Sbjct 298 AGTTCATCATTTCGTGCTAAATCTGTGATATTTCATTGTTCATCGTCCTTAAGACAGTCA 357
Query 343 TCATCTAATGTGGAGGAGATAGATGAGGATGTTGATAATAATCCTTCGGTGTCGTTGGAT 402
||||||||||||| | | |||| | || || ||||||||||||| || || ||
Sbjct 358 CCATCTAATGTGGA-G-G--AGAT-A-GA---TG---ATAATCCTTCGGTATCATTAGA- 404
Query 403 GG-TGAATCAGCAAATGTGATGCAGTTCAAGTGGTCTGATTTCAAGATTCTTGATTGTGT 461
|| |||||||||| |||||||||||||||||||||||||||| | |||||||||| ||||
Sbjct 405 GGATGAATCAGCACATGTGATGCAGTTCAAGTGGTCTGATTTTAGGATTCTTGATCGTGT 464
Query 462 TAGCATTGGTCATGGCGGCAGGGCCGATGAGCTTGTGTTTGAAGCTATAGTTCAGGTGCC 521
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 465 TAGCATTGGTCATGGCGGCAGGGCTGATGAGCTTGTGTTTGAAGCTATAGTTCAGGTTCC 524
Query 522 AGATAGCCCTTTGTTTAACCAAGGAGTTGTTCTTCGGAAATTGAATACCACTCGAGCTCA 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 AGATAGCCCTTTGTTTAACCAAGGAGTTGTTCTTCGGAAATTGAATACCACTCGAGCTCA 584
Query 582 AAGAAGAGGAAGAAGAGCCATCGAAGTGTTTAAAAAGCTAGTTCGTCGTAGACTTCTCTA 641
|||| ||||||||||||| || ||||| ||||| |||||||||||||| |||||||||||
Sbjct 585 AAGACGAGGAAGAAGAGCTATAGAAGTTTTTAAGAAGCTAGTTCGTCGGAGACTTCTCTA 644
Query 642 CCATTCTTACTCAATGCAAGTTCACGGTTATATCACCAATAACTTGAGCGATGATCAGTA 701
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 645 CCATTCTTACTCAATGCAAGTTCACGGTTATATCACCAATAACTTAAGCGATGATCAGTA 704
Query 702 CTCATTTACCCTTGTACATGGGTGCCATGGAAGTTTCTCGATTAGGCACTGGCTTCAACA 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 CTCATTTACCCTTGTACATGGGTGCCATGGAAGTTTCTCGATTAGGCACTGGCTTCAACA 764
Query 762 ATCTGATTGGCTTCCAACATTAGAAGCTACTCTTGCATTAGATGAAGAATCTTTTAGAAG 821
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 765 ATCTGATTGGATTCCAACATTAGAAGCTACTCTTGCATTAGATGAAGAATCCTTTCGAAG 824
Query 822 GGTCGGTGATGATACAACTGGAGGGCCTGCAGTCTCGAGGCAGTTAAGACTAATCCGTAT 881
||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct 825 GGTGGGTGATGATACTACTGGAGGGCCTGCAGTTTCAAGGCAGTTAAGACTAATCCGTAC 884
Query 882 ACTAATGAGGGATATTTTGATTGGAGTCAATTACTTGCACAGCCATGGTCTTGCTCACAC 941
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 885 ACTAATGAGGGATATTTTGATCGGAGTCAATTACTTGCACAGCCATGGTCTGGCTCACAC 944
Query 942 AGAACTGAGATTGGAAAATGTGCATATTAGCCCTGTGGATAGACATATCAAAGTAGGGAT 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 AGAACTGAGATTGGAAAATGTGCATATTAGCCCTGTGGATAGACATATCAAAGTAGGGAT 1004
Query 1002 TCTTGGAAATGCAGCTGATTTTAACGGGGATGGTCCAAGTACTAGCAGCGCTTACAGTAC 1061
||| |||||||| ||||| ||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1005 TCTCGGAAATGCTGCTGACTTTAACGGGGATGTTCCAAGTACTAGCAACGCTTACAGTAC 1064
Query 1062 CATGGACAGACGACAAATGATGATAGCATTTGACATGAGATGTGTTGGATTCATGATGGC 1121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 CATGGACAGACGACAAATGATGATAGCATTTGACATGAGATGTGTTGGATTCATGATGGC 1124
Query 1122 AAAAATGGTACTTCAAGAATTGATGGATCCATTAATCTTTGCGAAATTGAAGTCTTTCTT 1181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1125 AAAAATGGTACTTCAAGAATTGATGGATCCATTAATCTTTGCGAAATTGAAGTCTTTCCT 1184
Query 1182 GGCAAAGGGGAATGATCCTTCCTCGCTACGAGAGTTCTTTGTGACGACGCTCAATACAAA 1241
||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 1185 GGCAAAGGGGAATGATCCTTCCTCGCTGCGGGAGTTTTTTGTGACGACGCTCAATACAAA 1244
Query 1242 CTCTGAATCTGGAAATACCGGAGTGCAAATACTTGATAGAAACTGGGGAGCAGGTTGGCA 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 CTCTGAATCTGGAAATACCGGAGTGCAAATACTTGATAGAAACTGGGGAGCAGGTTGGCA 1304
Query 1302 CCTTTTATCTTCGTTAATTGCTACCAGACCTTCTAAAAGAATAAGTTGCTTGGATGCTCT 1361
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1305 CCTTTTATCTTTGTTAATTGCTACCAGACCTTCTGAAAGAATAAGTTGCTTGGATGCTCT 1364
Query 1362 TAAACATCCCTTTCTATGTGGACCAAGATGGCGTGTTGCCCCATCAATGGATATCATCAG 1421
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 TAAGCATCCCTTTCTATGTGGACCAAGATGGCGTGTTGCCCCATCAATGGATATCATCAG 1424
Query 1422 ATGGGGTCTTGGATCAACCGCAGTAAAGATTTCAGAAGAATACATTTACCGCATGCCTCA 1481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 ATGGGGTCTTGGATCAACCGCAGTAAAGATTTCAGAAGAATACATTTACCGCATGCCTCA 1484
Query 1482 GCGCCAAAGACTTGCCCACTTCATTGGACTGATGGAGATGCTAAATCCTTATCCAAAACC 1541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1485 GCGCCAAAGACTTGCCCACTTCATTGGACTGATGGAGATGCTAAATCCTTATCCAAAGCC 1544
Query 1542 AAACTGTTGGTTGGAGCTTTTACCGGGAAGATGGCGTCTGTTATACTCAACCGGAAAGCA 1601
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1545 AAACTGTTGGTTGGAGCTTTTACCGGGAAGATGGCGTCTTTTATACTCAACTGGAAAGCA 1604
Query 1602 CATAGGTCTAACTCTGCGTCAGCCCTCAACACGTGCCTTAATAGGCAACGTTCACTTAAC 1661
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1605 CATAGGTCTAACTCTGCGTCAGCCTTCCACACGTGCCTTAATAGGCAACGTTCACTTAAC 1664
Query 1662 GATAACTCGAGCTTCAGAATCCGCAAACAACACTTCGCTTTCCTTTACCTCTGATATAGG 1721
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
Sbjct 1665 GATAACTCGAGCTTCAGAATCCATAAACAACACTTCACTTTCCTTTACCTCTGATATACG 1724
Query 1722 CTTCACTGCCATCACCAGCAAAGATTGGCCACACAACAAAATCGGAGCTACTGGAAAATT 1781
|||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||||
Sbjct 1725 CTTCACTGCCATAACCAGCAAAGACTGGCCACACAACAAAATCGGAGCTGCTGGGAAATT 1784
Query 1782 ACAAACACTCTCTCAATTCAGATTAATAGCTGGAAAAAGACTTTACCTCAAAGAAGaaaa 1841
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1785 ACAAACGCTCTCTCAATTCAGACTAATAGCTGGAAAAAGACTTTACCTCAAAGAAGAGAA 1844
Query 1842 aaaaaaCATTGGTAAGTTCTCAATGGGCGAACCAGATGCTGAAGAAGGTTTAGCCGAGAA 1901
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1845 AAAGAACATTGGTAAGTTCTCAATGGGTGAACCAGATGCTGAAGAAGGTTTAGCCGAGAA 1904
Query 1902 GCTTGAAACCGAGAAATGGAAAAAAGTAGTGCCCTTCAAGGAGTTTCCGTCGAGTCTTCC 1961
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1905 GCTTGAAACCGAGAAATGGAAAAAAGTCGTGCCCTTCAAGGAGTTTCCGTCGAGTCTTCC 1964
Query 1962 TGTAGCAAAACTCATATCTGGAGATATTGAAGTGACGATGAACATGAATGATCGTATAGA 2021
||||||||||||| | |||||||| || ||||||||||||||||||||||||| ||||||
Sbjct 1965 TGTAGCAAAACTCGTCTCTGGAGAAATCGAAGTGACGATGAACATGAATGATCATATAGA 2024
Query 2022 TTCACCTGGGAGTGTGATTGGAGAAGTTAGGAAGCAAATTCCGCCGGAAATGTTCGATCT 2081
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2025 TTCACCTGGGAGTGTGATTGGAGAAGTTAGAAAGCAAATTCCGCCGGAAATGTTCGATCT 2084
Query 2082 TTCTAAGCTTGTGTGTGGGACTTACATAGACAATAGGTTACTTGTACTTAGGTGTGTAAA 2141
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 2085 TTCTAAGCTTGTGTGTGGGACTTATATAGACAGTAGGTTACTTGTACTTAGGTGTGTAAA 2144
Query 2142 TGGTTCAGCATTGTTGTTCACAAGATCCAGCTTGGACCATATGTCTATGTAGCCACTTGG 2201
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||
Sbjct 2145 TGGTTCAGCATTGTTGTTCACAAGGTCCAGCTTGGACCATAAGTCTATGTAGCCATTTGG 2204
Query 2202 ATC-GGTTCCTTATGTATATAACAAATGTATCATTCTTTTTTGGACTAAACC-TTGTAGT 2259
|| ||||| |||||||||||||||||| |||||||||||| |||||||||| |||||||
Sbjct 2205 CTCAGGTTC-TTATGTATATAACAAATGAATCATTCTTTTTGGGACTAAACCGTTGTAGT 2263
Query 2260 CTATGTGTATGTTGTGGTAATAATGTTTGCTTTTGGCTTTGAGGTTGTAATAAGAGCTTT 2319
|| |||||||||||||||||| || ||||||||||||| |||||||||||||||||||
Sbjct 2264 CTCTGTGTATGTTGTGGTAAT---GTATGCTTTTGGCTTTTAGGTTGTAATAAGAGCTTT 2320
Query 2320 TTAGTAGAAGC 2330
|||||| ||||
Sbjct 2321 TTAGTAAAAGC 2331
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115662055680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5