BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg495421

Length=531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G53486.4 | Symbols:  | unknown protein; LOCATED IN: endomemb...   520    7e-147


> AT5G53486.4 | Symbols:  | unknown protein; LOCATED IN: endomembrane 
system; Has 30201 Blast hits to 17322 proteins in 780 
species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi 
- 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 
(source: NCBI BLink). | chr5:21721822-21722837 FORWARD LENGTH=623
Length=623

 Score =  520 bits (281),  Expect = 7e-147
 Identities = 391/439 (89%), Gaps = 27/439 (6%)
 Strand=Plus/Plus

Query  92   GCCATAGTGGAAGGCTCTATCCAGCTCGGA-GGTGCGAAGATGCATGAGAGTTCCATGCT  150
            ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct  124  GCCATAGTGGAAGGCTCTATCCAGCTC-GACGGTGCGAAGATGCATGAGAGTTCCATGCT  182

Query  151  TTACAAGAGTGAGGAAGTGGAAGTGAAGAAGATGAGTCATAGGAAGTTGATGTTCCACTC  210
            ||||||||||||||| ||||  |||||||||||| |||||||||||||||||||||||||
Sbjct  183  TTACAAGAGTGAGGAGGTGGGTGTGAAGAAGATGGGTCATAGGAAGTTGATGTTCCACTC  242

Query  211  GACAGCGGACTACGACGACGCAGGACCCAACCCTAAACATGACCCAAGGAGAAGGCCCGG  270
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  243  GACAGCGGACTACGACGACGCAGGACCCAACCCTAAACACGACCCAAGGAGAAGGCCCGG  302

Query  271  GGGCAAGGGTTGAATCATCAACAC-GA--TAG-TA-GCC-T-ATATATA-AGTA-CAT--  319
             ||||||||||||||||||||||| ||  ||  |  | | | ||||||| |||| |||  
Sbjct  303  AGGCAAGGGTTGAATCATCAACACAGAACTATCTCTGTCATTATATATATAGTAGCATAT  362

Query  320  ------GCAC--GAa-ta-tatatatatatcatatatGAATGTATGTATGTGATGTATCC  369
                  ||||  | | || ||| ||||||||||||||||||  |||||||||||||||||
Sbjct  363  ATATAAGCACATGCACTAATATCTATATATCATATATGAAT--ATGTATGTGATGTATCC  420

Query  370  TCCATTTCTGACTCTTTTTGTTTGAGGATGAGATCAGTGTACAATACCCTCCGGAAACAC  429
            |||||| ||||||||||||||||||||||||| |||||||| |||||||| ||||||| |
Sbjct  421  TCCATT-CTGACTCTTTTTGTTTGAGGATGAGCTCAGTGTAAAATACCCTTCGGAAACCC  479

Query  430  GTTCGTGAAAGGATTAGTGTCTAGTGACAAGAGATACTAAATCCTTATTTATTATCATCT  489
            | | ||||||||||||||||||| | |||||| ||| |||||||||||||||||||||||
Sbjct  480  GCTAGTGAAAGGATTAGTGTCTAATAACAAGACATAATAAATCCTTATTTATTATCATCT  539

Query  490  -ATTTCATTGACATATATA  507
             ||||||||||||||||||
Sbjct  540  TATTTCATTGACATATATA  558



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25418478382


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5