BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495426
Length=893
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53490.3 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1118 0.0
> AT5G53490.3 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:21723307-21724642 REVERSE LENGTH=955
Length=955
Score = 1118 bits (605), Expect = 0.0
Identities = 731/792 (92%), Gaps = 8/792 (1%)
Strand=Plus/Plus
Query 105 ATGTTCTCCGCTGGAGAAAACAGAGAAAATGGTGAAGGTACCAAGAAGAGTTTGTTGCCG 164
|||||||| || ||||||||||||||||||||||||||| ||||||||| | || ||
Sbjct 160 ATGTTCTCAGCAGGAGAAAACAGAGAAAATGGTGAAGGTGTAAAGAAGAGTCTCTTTCCT 219
Query 165 ATAAAGGAGCTTGGAAGTATCGCTTGCGCTGCTCTTTGTGCTTGCACTCTTATTATGGCT 224
| |||||||||||| |||||||||||| ||||| |||||||||||||||| || |||
Sbjct 220 CTTAAGGAGCTTGGATCTATCGCTTGCGCAGCTCTCTGTGCTTGCACTCTTACAATAGCT 279
Query 225 TCTCCTGTAATTGCTGCTAACCAGAGACTTCCTCCACTATCAACAGAACCAGACCGGTGT 284
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 280 TCTCCTGTTATTGCTGCTAACCAGAGACTTCCTCCGTTATCAACAGAACCAGACCGGTGT 339
Query 285 GAAAAAGCATTCGTTGGTAACACGATAGGTCAAGCAAATGGGGTTTATGACAAACCGCTA 344
||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 340 GAAAAAGCATTTGTTGGTAACACGATAGGTCAAGCAAATGGTGTCTATGACAAACCACTG 399
Query 345 GATCTTAGGTTCTGTGATTACACAAACGATCAGACTAATCTCAAAGGCAAGACTCTCTCT 404
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 400 GATCTTAGGTTCTGTGATTACACAAATGATCAAACTAATCTCAAAGGCAAGACTCTCTCT 459
Query 405 GCAGCCTTGATGGTAGGAGCTAAGTTTGATGGTGCAGATATGACTGAAGTTGTTATGTCA 464
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 GCAGCCTTGATGGTTGGGGCTAAGTTTGATGGTGCAGATATGACTGAAGTTGTTATGTCA 519
Query 465 AAAGCTTATGCCGTTGAAGCAAGCTTTAAGGGGGTGAATTTCACGAATGCTGTTATCGAT 524
||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 520 AAAGCTTATGCTGTAGAAGCAAGCTTTAAAGGGGTGAATTTCACTAATGCTGTTATCGAT 579
Query 525 CGGGTGAATTTTGGGAAATCGAATTTGAAAGGTGCGGTGTTCCGGAACACGGTGTTATCC 584
||||||||||| |||||||||||| |||||||||||||||| |||||||||| ||||||
Sbjct 580 CGGGTGAATTTCGGGAAATCGAATCTGAAAGGTGCGGTGTTTAGGAACACGGTATTATCC 639
Query 585 GGTTCGACATTCGAGGAGGCAAATTTGGAGGATGTGGTCTTTGAGGACACTATCATTGGT 644
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 GGTTCGACATTTGAGGAGGCAAATTTGGAGGATGTGGTCTTTGAGGACACTATCATTGGT 699
Query 645 TACATAGACCTTCAGAAAATATGTAGGAACGAGTCGATAAACGAAGAAGGAAGACTTGTG 704
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 700 TACATAGACCTTCAGAAAATATGTAGGAATGAGTCCATAAACGAAGAAGGAAGACTTGTG 759
Query 705 TTGGGTTGCCGATAGAGAAGAGAGAAAGATTTGATTTGAATGTATTATATATGTAAGATT 764
||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 760 TTGGGATGCCGATAGAGAAGAGAGAAGGTTTTGATTTGAATGTATTATATATGTAAGATT 819
Query 765 TGAGATTTG---ACACAAAGATGTATGAAACAAAGTAAGTAAAGGTTCAAGGATAGGAGT 821
| ||||||| ||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 820 TAAGATTTGTTGACACAAAGATGTATGAAAC----TAAGTAAAGGTTGAAGGATAGGAGT 875
Query 822 CGAGAGAGTTATGAGCGGTTGTGTAATCAAATTCTTGTAAATTCTGTAGCCAAACAAAAG 881
| ||||||||||||| |||||| ||||| | ||||||||||||||||| |||||||||||
Sbjct 876 CAAGAGAGTTATGAGAGGTTGTATAATCGA-TTCTTGTAAATTCTGTAACCAAACAAAAG 934
Query 882 GCATTTTCTCTG 893
|| |||||||||
Sbjct 935 GCGTTTTCTCTG 946
Score = 148 bits (80), Expect = 7e-35
Identities = 97/105 (92%), Gaps = 2/105 (2%)
Strand=Plus/Plus
Query 1 ACACTCCCATGGCTTCGCTTCCTGTTCAATTCACGAGGAATCATTTCTCTTCACCGTTTT 60
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 14 ACACTTCCATGGCTTCGCTTCCTGTTCAATTCACGAGGAATCAAATCTCTTCACCGTTTT 73
Query 61 TCTCCGTTAAAC-TCCGCCATGAGCCGAGATCTTTAGTAACAGTA 104
|||| || |||| |||||| |||||| ||||||||||||||||||
Sbjct 74 TCTCTGT-AAACCTCCGCCGTGAGCCTAGATCTTTAGTAACAGTA 117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43603239596
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5