BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495431
Length=1379
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53540.1 | Symbols: | P-loop containing nucleoside triphosp... 2078 0.0
AT4G27680.1 | Symbols: | P-loop containing nucleoside triphosp... 1014 0.0
> AT5G53540.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:21749286-21751237
REVERSE LENGTH=1625
Length=1625
Score = 2078 bits (1125), Expect = 0.0
Identities = 1304/1389 (94%), Gaps = 17/1389 (1%)
Strand=Plus/Plus
Query 1 CTGTTCTTTTCCTGTAATTT-CAGTTAAGAGCTTTCTTCTTCCTTTCCCTATCCTCAAAC 59
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
Sbjct 12 CTGTTCTTTTCCTGTAATTTCCAGTTTAGAGCTTTCTTCTTCCTTTCCCTATCCTCAACC 71
Query 60 CC--AC--ACGCTCTTCAAGAATTAGGGTTTCTTTTCTTTTTGAATCTTCTCTAATTCCC 115
|| || |||||||||||||||||||| |||| ||||||||||||||| ||||||
Sbjct 72 CCAAACGAACGCTCTTCAAGAATTAGGG-----TTTCGTTTTGAATCTTCTCTGATTCCC 126
Query 116 AAATCCAAAGATATGAAGAGATCTTCAGGTAAAAAGGATTCAAATTTCATAGAGCAATTG 175
||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||
Sbjct 127 AAATCCAAAGATATGAAGAGATCTTCAGGGAGAAAGGATTCAAATTTCATAGAACAATTG 186
Query 176 ATACTTTACGTCGCTAGTGCTGCATTGAGTAGCTTGGTTCTCTACGTTGGTCTTCGAGCA 235
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 187 ATACTTTACGTCGCTAGTGCTGCATTGAGTAGCTTGGTTCTCTACGTTGGTCTCCG-TCA 245
Query 236 A-TTGACCCGAACCGTGACGCAGCTAAAAAGTCTCTCGAGCATAAAAGAGAAATCGCCAA 294
| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 246 ACTTGACCCGAACCGTGACGCCGCTAAAAAGTCTCTCGAGCACAAAAGAGAAATCGCCAA 305
Query 295 ACGTTTAGGTCGTCCTCTTATTCAAACCAATCAATACGAGGATGTGATTGCGTGTGATGT 354
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 ACGTTTGGGTCGTCCTCTTATTCAAACCAATCAATACGAGGATGTGATTGCGTGTGATGT 365
Query 355 AATAAACCCATTACACATTGATGTTGAGTTTGGTTCTATTGGAGGGTTAGAGTCAATTAA 414
|||||||||||||||||| |||||||| ||||||||||||||||| || |||||||||||
Sbjct 366 AATAAACCCATTACACATAGATGTTGAATTTGGTTCTATTGGAGGATTGGAGTCAATTAA 425
Query 415 GCAAGCTTTGTATGAGCTAGTGATTCTACCATTGAAAAGACCTGAACTTTTTGCTTATGG 474
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 426 GCAAGCTTTGTATGAGCTTGTGATTCTACCATTGAAAAGACCTGAGCTTTTTGCTTATGG 485
Query 475 GAAGTTACTTGGTCCTCAAAAGGGAGTTTTGTTGTATGGTCCTCCTGGTACTGGGAAGAC 534
||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 486 GAAGTTACTGGGTCCTCAAAAGGGTGTTTTGTTGTATGGTCCTCCTGGAACTGGGAAGAC 545
Query 535 TATGCTTGCTAAAGCGATTGCGAGAGAATCGGAAGCTGTTTTTATTAATGTTAAGGTTTC 594
||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 546 TATGCTTGCTAAAGCGATTGCGAGAGAGTCTGAAGCTGTTTTTATTAATGTAAAGGTTTC 605
Query 595 TAATTTGATGAGCAAGTGGTTTGGTGATGCTCAGAAGCTTGTGTCTGCCGTGTTTAGCTT 654
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 606 TAATTTGATGAGCAAGTGGTTTGGTGATGCACAGAAGCTTGTGTCTGCTGTGTTTAGCTT 665
Query 655 GGCCTATAAACTCCAACCTGCTATTATTTTTATCGATGAGGTGGATAGTTTTCTTGGCCA 714
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 666 GGCGTATAAACTCCAACCTGCTATTATTTTTATCGATGAGGTGGATAGCTTTCTTGGCCA 725
Query 715 GCGTCGTTCGACTGATAATGAAGCAATGTTGAATATGAAGACTGAGTTTATGGCTTTATG 774
||| || |||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 726 GCGACGGTCGACTGATAATGAAGCAATGTCGAATATGAAGACCGAGTTTATGGCTTTATG 785
Query 775 GGATGGATTTACTACAGACCAGAATGCGAGGGTGATGGTTCTTGCTGCAACTAACAGACC 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 GGATGGATTTACTACAGACCAGAATGCGAGGGTGATGGTTCTTGCTGCAACTAACAGACC 845
Query 835 TTCGGAGCTTGATGAAGCAATATTGAGGCGTTTTCCTCAGTCATTTGAGATCGGGATGCC 894
|| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 846 ATCAGAGCTCGATGAAGCGATATTGAGGCGTTTTCCTCAGTCATTTGAGATCGGGATGCC 905
Query 895 TGATTGCCGGGAGAGAGCTCAAATATTGAAAGTGGTTTTGAAAGGAGAGAGGGTTGAACC 954
|||||||| ||||||||| |||||||||||||| ||||||||||||||||| |||||| |
Sbjct 906 TGATTGCCAGGAGAGAGCGCAAATATTGAAAGTTGTTTTGAAAGGAGAGAGTGTTGAATC 965
Query 955 AGATATTAACTATGATCATGTAGCTCGTTTATGTGAAGACTATACTGGATCAGATATTTT 1014
||||||||||||||||| | |||||||||||||||| |||||||| ||||||||||||||
Sbjct 966 AGATATTAACTATGATCGTATAGCTCGTTTATGTGAGGACTATACCGGATCAGATATTTT 1025
Query 1015 TGAACTCTGCAAAAAAGCAGCTTACTTCCCAATCCGAGAAATCCTAGAGGCGGAGAAAAA 1074
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1026 TGAACTCTGCAAAAAAGCAGCTTACTTCCCAATCCGAGAAATCCTAGAGGCAGAGAAAGA 1085
Query 1075 GGGCAAACAAATTTCTGTGCCTAGACCATTGTCACAACTAGACTTGGAGAAGGTTCTTGC 1134
|||||||| | ||||||| |||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1086 GGGCAAACGAGTTTCTGTTCCTAGACCATTGACACAACTGGACTTGGAGAAGGTTCTTGC 1145
Query 1135 TACCTCGAAGAAGACACAAGTTGCTGCAAGCGAGTACACTGGTTTAAGCTCGCAATCTTC 1194
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1146 TACCTCAAAGAAGACACAAGTTGCTGCAAGCGAGTACACTGGTTTAAGCTCTCAATCTTC 1205
Query 1195 ACTCTGGAGAAGTCCAAGCAATGCCGACGAGGTCCAAGCAGCTATAAACGGCATTTCAAA 1254
||||| ||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 1206 TGTCTGGGGAAGTCCAAGCAATGCCGATGAGGTCCAAGCAGCTATAAACGGCATCTCCAA 1265
Query 1255 GCTTTTCGTCTCTC-GCCTTAGAAACATCCAGCCAGACTCTCAAGATTCATATCAACATG 1313
|||||| ||||| | || |||||||||| |||||||| ||||| ||||||||||||||
Sbjct 1266 GCTTTTTGTCTCGCAGC-TTAGAAACATTCAGCCAGATTCTCAGGATTCATATCAACAAC 1324
Query 1314 AT--T-CAGAAGGAGATTCGGAATAGAAGCAAACTCTTCACTAGAGCTTTGTATAGTCCA 1370
|| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1325 ATCCTTCAGAAGGAGATTCGGAATAGAAGCAAACTCTTCACTAGAGCTTCGTATAGTCCA 1384
Query 1371 AAAAGAGTA 1379
|||||||||
Sbjct 1385 AAAAGAGTA 1393
> AT4G27680.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:13821106-13823342
FORWARD LENGTH=1613
Length=1613
Score = 1014 bits (549), Expect = 0.0
Identities = 972/1173 (83%), Gaps = 41/1173 (3%)
Strand=Plus/Plus
Query 176 ATACTTTACGTC-GCTAGTGCTGCATTGAG-TAGCTTGGTTCTCTACGTTGGTCTTCGAG 233
|||||||||| | || || ||||| || || | |||||||||||| | ||||||||
Sbjct 197 ATACTTTACG-CGGCGAGCGCTGCTTTCAGCT-GCTTGGTTCTCTTTGCGGGTCTTCG-T 253
Query 234 CAAT-T-GACCCGAACCGTGACGCAGCT-AAAAAGTCTCTCGAGCATAA-AAGAGAAATC 289
| || | || || || ||||| || || |||||| ||||||||||||| ||| ||||||
Sbjct 254 C-ATCTCGATCCTAATCGTGAGGCTTCTAAAAAAG-CTCTCGAGCATAAGAAG-GAAATC 310
Query 290 GCCAAACGTTTAGGTCGTCCTCTTATTCAAACCAATCAATACGAGGATGTGATTGCGTGT 349
| |||||||| |||||||||||| |||| ||||||| |||||||||||| ||||| |||
Sbjct 311 TCTAAACGTTTGGGTCGTCCTCTTGTTCAGACCAATCCATACGAGGATGTAATTGCATGT 370
Query 350 GATGTAATAAACCCATTA-CACATTGATGTTGAGTTTGGTTCTATTGGAGGGTTAGAGTC 408
||||| ||||| ||| | ||||||||||| ||||||||||||||||||||||| ||| |
Sbjct 371 GATGTGATAAATCCA-GACCACATTGATGTGGAGTTTGGTTCTATTGGAGGGTTGGAGAC 429
Query 409 AATTAAGCAAGCTTTGTATGAGCTAGTGATTCTACCATTGAAAAGACCTGAACTTTTTGC 468
|| ||||| |||||||||||||| |||||| ||||| ||||||||||||| ||||||||
Sbjct 430 CATCAAGCAGGCTTTGTATGAGCTTGTGATTTTACCACTGAAAAGACCTGAGCTTTTTGC 489
Query 469 TTATGGGAAG-TTACTTGGTCCTCAAAAGGGAGTTTTGTTGTATGGTCCTCCTGGTACTG 527
||| |||||| || ||||| |||||||| || || ||| | ||||| |||||||||||||
Sbjct 490 TTACGGGAAGCTT-CTTGGACCTCAAAAAGGTGTCTTGCTCTATGGACCTCCTGGTACTG 548
Query 528 GGAAGACTATGCTTGCTAAAGCGATTGCGAGAGAATC-GGAAGCTGTTTTTATTAATGTT 586
| ||||||||||||||||| || ||||| | ||| || || ||||||||| |||||||||
Sbjct 549 GAAAGACTATGCTTGCTAAGGCTATTGCCAAAGAGTCAGG-AGCTGTTTTCATTAATGTT 607
Query 587 AAGGTTTCTAATTTGATGAGCAAGTGGTTTGGTGATGCTCAGAAGCTTGTGTCTGCCGTG 646
| |||||| || ||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 608 AGGGTTTCAAACCTGATGAGCAAGTGGTTTGGAGATGCTCAGAAGCTTGTTTCTGCTGTG 667
Query 647 TTTAGCTTGGCCTATAAACTCCAACCTGCTATTATTTTTATCGATGAGGTGGATAGTTTT 706
|||||||||||||| ||||||||||||||||| |||||||| |||||||| || || |||
Sbjct 668 TTTAGCTTGGCCTACAAACTCCAACCTGCTATCATTTTTATTGATGAGGTTGAGAGCTTT 727
Query 707 CTTGGCCAGCGTCGTTCGACTGATAATGAAGCAATGTTGAATATGAAGACTGAGTTTATG 766
||||| ||||| ||||| || ||| ||||||| ||| || ||||||||||||||||||
Sbjct 728 CTTGGTCAGCGCCGTTCAACAGATCATGAAGCTATGGCCAACATGAAGACTGAGTTTATG 787
Query 767 GCTTTATGGGATGGATT-TACTACAGA-CCAGAATGCGAGGGTGATGGTTCTTGCTGCAA 824
||||||||||||||||| | |||| || || | |||| ||||| ||||||||||||||||
Sbjct 788 GCTTTATGGGATGGATTCT-CTACTGATCC-GCATGCAAGGGTTATGGTTCTTGCTGCAA 845
Query 825 CTAACAGACCTTCGGAGCTTGATGAAGCAATATTGAGGCGTTTTCCTCAGTCATTTGAGA 884
|||||||||| || |||||||||||||||||||| |||||| |||||||| | |||||||
Sbjct 846 CTAACAGACCGTCAGAGCTTGATGAAGCAATATTAAGGCGTCTTCCTCAGGCCTTTGAGA 905
Query 885 TCGGGATGCCTGATTGCCGGGAGAGAGCTCAAATATTGAAAGTGGTTTTGAAAGGAGAGA 944
| || || |||||| |||||||||||||| | |||||||||||| | ||||||||||||
Sbjct 906 TTGGAATACCTGATCGCCGGGAGAGAGCTGAGATATTGAAAGTGACTCTGAAAGGAGAGA 965
Query 945 GGGTTGAACCAGATATTAACTATGATCATGTAGCTCGTTTATGTGAAGACTATACTGGAT 1004
|||| ||||| |||||| ||| |||||| ||||||| ||||| |||| |||||| ||||
Sbjct 966 GGGTGGAACCTGATATTGACTTTGATCACATAGCTCGCTTATGCGAAGGCTATACCGGAT 1025
Query 1005 CAGATATTTTTGAACTCTGCAAAAAAGCAGCTTACTTCCCAATCCGAGAAATCCTAGAGG 1064
|||| |||||||| || ||||| ||||||||||||||||| ||| ||||||||||||| |
Sbjct 1026 CAGACATTTTTGAGCTATGCAAGAAAGCAGCTTACTTCCCTATCAGAGAAATCCTAGATG 1085
Query 1065 CGGAGAAAAAGGGCAAACAAAT-TTCTGTG-CC-TAGACCATTGTCACAACTAGACTTGG 1121
| |||| |||||| |||| | | || || | || ||| ||||| ||||| |||| ||||
Sbjct 1086 CAGAGAGAAAGGGGAAACCA-TGTT-TG-GACCCTAGGCCATTATCACAGTTAGATTTGG 1142
Query 1122 AGAAGGTTCTTGCTACCTCGAAGAAGACACAAGTTGCTGCAAGCGAGTACACTGGTTTAA 1181
||||||||||||| || || ||||||||||||||||| ||| |||||||| | || |
Sbjct 1143 AGAAGGTTCTTGCAACGTCAAAGAAGACACAAGTTGCAGCAGGCGAGTACTCA--TTGA- 1199
Query 1182 GCTCGCAATCTTCA-CTCTGGAGAAG-TCCAAGC-AATGCC-GACGAGGTCCAAGCAGCT 1237
||||||| || || || |||||| | || ||| || || || |||||||| |||||
Sbjct 1200 GCTCGCAGTCCTCGGCT-TGGAGAGGCTC-AAGGGAA--CCAGATGAGGTCCAGGCAGCG 1255
Query 1238 ATAAACGGCATTTCAAAGCTTTTCGTCTCTC-GCCTTAGAAACATCCAGCCAGACTCTCA 1296
|||| || || || |||||| | || |||| | | | ||| | ||| |||| |||||
Sbjct 1256 ATAAGTGGGATCTCGAAGCTTCTAGTTTCTCAGA-TCATTAACCTACAGTCAGAATCTCA 1314
Query 1297 AGATTCATATCAACATGATTCAGAAGGAGATTC 1329
||||||| || | ||| | |||| ||||||
Sbjct 1315 GGATTCATGGCAGCGGGATCCCGAAGAAGATTC 1347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67921337385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5