BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495433
Length=2298
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53570.2 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfami... 2852 0.0
> AT5G53570.2 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily
protein | chr5:21760590-21763462 REVERSE LENGTH=2250
Length=2250
Score = 2852 bits (1544), Expect = 0.0
Identities = 1850/1993 (93%), Gaps = 40/1993 (2%)
Strand=Plus/Plus
Query 330 GAATCAGATGAAGGCGTTACGGAGAAGCTATActtcaacgtcttctgggaattcatcttc 389
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 GAATCAGATGAAGGCGTTACGGAGAAGCTATACTTCAACGTCTTCTGGGAATTCA----- 311
Query 390 ttcttcttcttcttcgttaccttcttcttcgtcttcttcgttaccatcttcttcttcttc 449
|||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 312 -TCTTCTTCGTCTTCGTTACCTTCTTCGTCTTCTTCTTCGTTACCATCTTCTTCTTCTTC 370
Query 450 ttcacctcctccttctaattctaattcttcttcttcgaattc---ttcttcttcgaattc 506
|||||||||| ||||||||||||| ||||| ||||||||| |||||||||| ||
Sbjct 371 TTCACCTCCTTCTTCTAATTCTAA---TTCTTATTCGAATTCTAATTCTTCTTCG---TC 424
Query 507 ttcttcgtcgtggatacatcttcgttctgttctcttTGTGGCGAATCTTTCGTCTCCATC 566
||| ||||||||||| ||||| || || |||||||||||||| |||||||||||||| ||
Sbjct 425 TTCGTCGTCGTGGATCCATCTACGGTCGGTTCTCTTTGTGGCTAATCTTTCGTCTCCGTC 484
Query 567 TTCAGTTACTTCTTCCGATCGCCGGCGGAAATCACCGTGGTCTCGCCGGAAAAGAAAATG 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 TTCAGTTACTTCTTCCGATCGCCGGCGGAAATCACCGTGGTCTCGCCGGAAAAGAAAATG 544
Query 627 GGCATTGACGCCGCATCAATGGAGGAGTTTGTTTACACCGGAGGGTAAACTCCGTGATGG 686
|||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 545 GGCATTGACGCCACATCAATGGAGGAGTTTATTTACACCGGAGGGAAAACTCCGTGATGG 604
Query 687 TGGAGTTGGATTTCTGAAGAAAGTTAGAAGCAGAGGTGTTGATCCAAGTATTCGTGCAGA 746
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 TGGAGTTGGATTCCTGAAGAAAGTTAGAAGCAGAGGTGTTGATCCAAGTATTCGTGCAGA 664
Query 747 AGTGTGGCTGTTCTTGCTCGGAGTCTATGATTTGAACAGTACTAGTGAAGAAAGAGAAGC 806
||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 665 AGTGTGGCTGTTCTTACTCGGAGTTTATGATTTGAATAGTACTAGTGAAGAAAGAGAAGC 724
Query 807 AGTTAAAACTCAAAAAAGGAAGGAGTATGAGAAACTACAGAGACGATGCCAGATGCTTCT 866
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 725 AGTGAAAACTCAAAAAAGGAAGGAGTATGAGAAACTACAGAGACGATGTCAGATGCTTCT 784
Query 867 AAAGTGCGGCAATGGGAA-TACTAATAATCTTGAGGAACTTCCTTCGGACGAGGCAAACG 925
|||||||| ||| |||| ||| ||||||||||||| ||||| || || |||||||||
Sbjct 785 CAAGTGCGGTAAT-GGAAGTACCGATAATCTTGAGGAGCTTCCATCTGATGAGGCAAACA 843
Query 926 GTCAATGTGTTCGGTTCGTGGATGATTATAAGATTACGGGATCAATGACAAATCAAGATG 985
||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||
Sbjct 844 GTCAATGTGTTCGGTTCGTGGATGATTATAAGATTACAGGACCAATGACAAGTCAAGATG 903
Query 986 TGGTCTCTGCTGTGAACACTGATTCTTCTGATACAGACTCTTGTGAAGATAATGAAGATG 1045
| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 TTGTTTCTGCTTTGAACACTGATTCTTCTGATACAGACTCTTGTGAAGATAATGAAGATG 963
Query 1046 TTCTACTACTCTCATCTTTTGTATACAGCGATGCGAAAAAA-CCTGAGGAGGATAATAGT 1104
|| |||||||||||||||||| | ||||||||| |||||| || |||||||||||||||
Sbjct 964 TTTTACTACTCTCATCTTTTGCACACAGCGATG-AAAAAAAGCCGGAGGAGGATAATAGT 1022
Query 1105 AATAACAATTCTGAAGAGAGTAGTTCTCCTCTTGTA------G---CTGAGATCCAAATA 1155
||||||||||||||||||| |||||||| ||||||| | ||||| ||||| ||
Sbjct 1023 AATAACAATTCTGAAGAGAATAGTTCTCTTCTTGTAGCTGCTGCTTCTGAGGTCCAAGTA 1082
Query 1156 GAAGTTGCGGTACACGAAGATTTCTCTACGTGGCAACGTATCATCCGGCTTGATGCTTTA 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 GAAGTTGCGGTACACGAAGATTTCTCTACGTGGCAACGTATCATCCGGCTTGATGCTTTA 1142
Query 1216 CGTGCGGATTCTGAGTGGGCAACA-TATTCTCCATATTCAACTGCAATCACTGAAAGCAA 1274
|| ||||||||||| ||||||| | ||||||||||||||||| |||||||| ||||||||
Sbjct 1143 CGAGCGGATTCTGAATGGGCAA-ATTATTCTCCATATTCAACAGCAATCACAGAAAGCAA 1201
Query 1275 AGCTCG-TGGTTTAGCTGAGTCTGTCGGGTTAAAAGACTATGATCACTTAGAAAGCTGCA 1333
|||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 AGCTCGCAGG-TTAGCCGAATCTGTCGGGTTAAAAGACTATGATCACTTAGAAAGCTGCA 1260
Query 1334 GGCTTTACCACGCTGCACGACTAGTTGCAATTCTTGAAGCTTATGCTATGTATGATCCTG 1393
|||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GGCTATACCACGCAGCACGGTTAGTTGCAATTCTTGAAGCTTATGCTATGTATGATCCTG 1320
Query 1394 AGATAGGCTACTGCCAAGGAATGAGTGATCTGTTATCTCCTATCCTCGCTGTGATCTCAG 1453
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1321 AGATAGGCTACTGTCAAGGAATGAGTGATCTGTTATCTCCAATCCTCGCTGTGATCTCAG 1380
Query 1454 AGGATCACGAGGCTTTCTGGTGCTTTGTTGGTTTTATGAAGAAAGCTCGGCATAATTTCA 1513
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1381 AGGATCACGAGGCTTTCTGGTGCTTTGTTGGTTTCATGAAGAAAGCTCGGCACAATTTCA 1440
Query 1514 GGCTCGATGAAGCAGGGATTCAAAGGCAGCTAAGTATTGTTTCAAAGATCATAAAAAACA 1573
|||| || ||||||||||||||||| |||||||| ||||| ||||||||||||||||| |
Sbjct 1441 GGCTTGACGAAGCAGGGATTCAAAGACAGCTAAGCATTGTATCAAAGATCATAAAAAATA 1500
Query 1574 AAGACTCTCAGCTCTATAAACACTTGGAGAATCTTCAAGCCGAGGATTGTAGTTTCGTTT 1633
||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1501 AAGACTCTCAGCTTTATAAACACTTGGAGAATCTTCAAGCAGAAGATTGTAGTTTCGTTT 1560
Query 1634 ACAGGATGGTGCTCGTTATGTTTAGGAGGGAGTTGAGTTTTGAACAGACACTTTGTCTCT 1693
||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1561 ACAGGATGGTGCTTGTTATGTTTAGGAGGGAGTTGAGTTTTGAACAGACGCTGTGTCTCT 1620
Query 1694 GGGAAGTGATGTGGGCTGATCAAGCCGCCATTAGAGCTGGAGTTGGGAAATCGCCATGGA 1753
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1621 GGGAAGTGATGTGGGCTGATCAAGCTGCCATTAGAGCTGGAGTTGGGAAGTCGCCATGGA 1680
Query 1754 GCAGAATCCGGCAACAAGCACCACCAACAGATGATCTGTTGCTCTACGCAATCGCGGCAC 1813
|||||||||||||||||||||| ||||| |||||| |||||||||| |||||||||||
Sbjct 1681 GCAGAATCCGGCAACAAGCACCGCCAACGGATGATTTGTTGCTCTATGCAATCGCGGCGT 1740
Query 1814 TAGTACTACGTAGGAAACTGATCATACAGAAATACAGTAGTATGGATGAGATTGTGGAAG 1873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 TAGTACTACGTAGGAAACTGATCATACAGAAATACAGTAGTATGGATGAGATTGTGGAAG 1800
Query 1874 AGTGTAATAGCATGGCTGGTCAGCTTAATGTCTGGAAGCTTCTAGATGATGCGCATCATC 1933
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1801 AGTGTAATAGCATGGCTGGTCAGCTTAATGTCTGGAAGCTTCTTGATGATGCCCATCATC 1860
Query 1934 TTGTCGTGACGCTTCACGACAAGATTGAAACTCTTTCTCAATCACACAGTATTTGATGAA 1993
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1861 TTGTCGTGACGCTTCACGACAAGATTGAAACTCTTTCTCAATCACAGAGTATTTGATGAA 1920
Query 1994 GAAGTCGATTAAAGCCAGAAATGAAGTGTTTCCACTACACAATC-CCCTTGCACTCGTCT 2052
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1921 GAAGTCGATCAAAGCCAGAAATGAAGTGTTTCCACTACACAAAAGCCCTTGCACTCGTCT 1980
Query 2053 GGCTGCGTTTTGTCAAGGTTTTAAGTTTGTCGCGGTTTGGTTCTTACTGATTTCACTCCT 2112
||||||||||| ||||||||| |||||||| |||||||||||||||| | ||||||||||
Sbjct 1981 GGCTGCGTTTTCTCAAGGTTTAAAGTTTGTTGCGGTTTGGTTCTTACCGTTTTCACTCCT 2040
Query 2113 CTCT--CTT-CTTCTTTCTTTTTGTTTCCTCGTCACACAGAGAAA-CACAATACTA-T-- 2165
|||| ||| ||||||||||||||||| ||| ||||||||||||| |||||||||| |
Sbjct 2041 CTCTTTCTTTCTTCTTTCTTTTTGTTTACTCATCACACAGAGAAAACACAATACTACTAT 2100
Query 2166 CCTCATCACTTTTATTGTAGTACTAATGAAAAAGACAAAACAATATTCCTGTTGAAATGT 2225
||| ||| |||||||||||||||||||||||||||||| |||||||| |||| ||||||
Sbjct 2101 CCTTATCGCTTTTATTGTAGTACTAATGAAAAAGACAAGGCAATATTCTTGTTAAAATGT 2160
Query 2226 GACGGATGAGTCTGAAACTGTCATTTCCACAACTGTATGAATCATATTTGTTCAATTGTA 2285
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 2161 AACGGATGAGTCTGAAACTGTCATTTCCACAATTGTATGAAACATATTTGTTCAATTGTA 2220
Query 2286 GAAACCCAGTTTC 2298
|||| ||||||||
Sbjct 2221 GAAATCCAGTTTC 2233
Score = 198 bits (107), Expect = 2e-49
Identities = 206/248 (83%), Gaps = 29/248 (12%)
Strand=Plus/Plus
Query 1 AGAGAGGCTTCAGTTGTTGGATGcttttgctttttttccttcttcttcatcttc-ttctt 59
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 12 AGAGAGGCTTCAGTTGTTGGATGCTTTTGCTTTTTTTCCTTCTTCTTCGTCTTCTTTCTT 71
Query 60 cgtctctcttttttttttttCAGTTTCGGCGTGCTAAAGAAGACGATA-AG-AGTCAATC 117
|||||||| || |||||||||||||||||||||| |||||||||||| || | ||||||
Sbjct 72 CGTCTCTC--TTCTTTTTTTCAGTTTCGGCGTGCTGAAGAAGACGATAGAGTAATCAATC 129
Query 118 A-A-T--CACAG---T----G---A-------tttt-ttttCTTAAACATCTCATGCTTG 155
| | | | || | | | |||| |||||||||||| ||||||||||
Sbjct 130 ACAGTGAGAGAGATTTGAGGGTAAATCTGTCCTTTTCTTTTCTTAAACAACTCATGCTTG 189
Query 156 ATTTCTGCTACGGCGGAGGAGGAGGAAGAGGAGGTTTACTTTA-CA-ATCACCGGGGAAG 213
|||||||||||||||||||||||||| || |||||||||||| | ||||||||| ||
Sbjct 190 ATTTCTGCTACGGCGGAGGAGGAGGAGGAAGAGGTTTACTTTTGCTTATCACCGGGAAAT 249
Query 214 TTCCGGCG 221
||||||||
Sbjct 250 TTCCGGCG 257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114055638240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5