BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495434
Length=1259
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53580.1 | Symbols: | NAD(P)-linked oxidoreductase superfam... 1877 0.0
> AT5G53580.1 | Symbols: | NAD(P)-linked oxidoreductase superfamily
protein | chr5:21765054-21767000 REVERSE LENGTH=1340
Length=1340
Score = 1877 bits (1016), Expect = 0.0
Identities = 1199/1283 (93%), Gaps = 30/1283 (2%)
Strand=Plus/Plus
Query 1 TTTATCTCCAAAAACATCCACACACTGAGAAACAGCAGAAGAAAGGCTAGAGAGCCTTC- 59
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 7 TTTATCTTCAAAAACATCCACACACTGAGAAACAGCAGAAGAAAGGCTTGAGAGCCTTCT 66
Query 60 T-T---C-----TCAATGGCTTTAACATTGTCAACCACAAAGACTTTCACTAATATAAAC 110
| | | |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 67 TCTCCACTATTTTCAATGGCTTTAACATTGTCAACCACAAAGACCTTCACTAACATAAAC 126
Query 111 TGCT----C---A-----AACATAACCACCTTTAAGCCTCTCAAGCTTCCTCTTTTCTGG 158
|||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 TGCTCAAACAATACTTCCAACATAACCACCTTTAAGCCTCTCAAGCTTCCTCTTTTCTGG 186
Query 159 CCATGGCAAAAGGTCAAAATGGGTCCTTTGAGTGTTTCTCCAATGGGTTTTGGGACATGG 218
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 187 CCATGGCAAAAGGTCAAAATGGGTCCTTTAAGTGTTTCTCCTATGGGTTTTGGGACATGG 246
Query 219 GCTTGGGGCAATCAGCTTCTTTGGGGTTATCAGACTTCCATGGATGATCAGCTTCAAGAA 278
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 247 GCTTGGGGTAATCAGCTTCTTTGGGGTTATCAGACTTCCATGGATGATCAGCTTCAACAA 306
Query 279 GCTTTTAAATTGGCTTTGGAAAATGGAATCAATTTGTTTGATACTGCTGATTCTTATGGC 338
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 GCTTTTGAATTGGCTTTGGAAAATGGAATCAATTTGTTTGATACTGCTGATTCTTATGGC 366
Query 339 ACTGGTAGGCTTAATGGTCAAAGTGAGAGACTTTTGGGGAAATTCATTAAAGAATCTCAA 398
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 ACTGGTAGGCTTAATGGCCAAAGTGAGAGACTTTTGGGGAAATTCATTAAAGAATCTCAA 426
Query 399 GTG-CTAAAAGGGAAACAAAATGAAGTAGTGGTAGCTACAAAGTTTGCAGCTTATCCATG 457
| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 G-GACTTAAAGGGAAACAAAATGAAGTAGTGGTAGCTACAAAGTTTGCAGCTTATCCATG 485
Query 458 GAGGTTAACCTCTGGACAGTTTGTGAATGCCTGCAGAGCTTCTTTAGACCGACTTCAGAT 517
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 486 GAGGTTAACTTCAGGACAGTTTGTGAATGCCTGCAGAGCTTCTTTAGACCGGCTTCAGAT 545
Query 518 AGACCAGCTCGGGATCGGACAGCTTCACTGGTCGACTGCAAACTACGCGCCTCTACAAGA 577
||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 546 AGACCAGCTCGGGATTGGACAGCTTCACTGGTCAACTGCAAGCTACGCGCCTCTACAAGA 605
Query 578 GCTTGTTCTTTGGGATGGTCTAGCGCAAATGTATGAAAAGGGCCTAGTTCGAGCGGTTGG 637
||||||||||||||||||||||| ||||||||| |||||||| ||||| |||| |||||
Sbjct 606 GCTTGTTCTTTGGGATGGTCTAGTGCAAATGTACGAAAAGGGTTTAGTTAGAGCCGTTGG 665
Query 638 AGTCAGTAACTATGGACCTCAACAGCTTGTGAAGATTCATGATTACCTTAAAACTCGAGG 697
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 AGTTAGTAACTATGGACCTCAACAGCTTGTGAAGATTCATGATTACCTTAAAACTCGAGG 725
Query 698 GGTTCCTTTATGCTCTGCTCAAGTGCAGTTCTCATTGCTAAGCATGGGGAAAGAGCAACT 757
|||||||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 726 GGTTCCTTTATGTTCTGCCCAAGTGCAATTCTCATTGCTAAGCATGGGAAAAGAGCAACT 785
Query 758 AGAGATCAAGAGTATATGTGACGAGCTCGGGATTTGTTTAATCTCTTATAGTCCTCTTGG 817
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 786 AGAGATCAAGAGTATATGCGACGAGCTCGGGATTCGTTTAATCTCTTATAGTCCTCTTGG 845
Query 818 TCTAGGAATGCTAACTGGGAAATACTCCTCTTCAAAACTTCCCACTGGTCCTCGATCATT 877
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 846 GCTAGGAATGCTAACTGGGAAATACTCCTCTTCAAAACTTCCCACTGGTCCACGATCATT 905
Query 878 GCTGTTTCGACAAATTCTACCTGGATTAGAGCCTCTGCTTCTAGCACTGAGTAAGATTGC 937
|||||| ||||||||||| ||||||||||| ||||| ||| |||||||||| |||||||
Sbjct 906 GCTGTTCCGACAAATTCTTCCTGGATTAGAACCTCTTCTTTTAGCACTGAGCGAGATTGC 965
Query 938 AAAGAAACGAGGAAAGACTATGCCTCAGGTCGCAATAAACTGGTGTATATGCAAAGGGAC 997
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 966 AAAGAAACGAGGAAAGACTATGCCTCAGGTTGCAATAAACTGGTGCATATGCAAAGGGAC 1025
Query 998 AGTACCGATACCCGGTATCAAGTCGGTAAAACATGTAGAGGATAATTTAGGTGCTCTGGG 1057
|||||||||||| || ||||||||||||| |||||| || |||||||| |||||||||||
Sbjct 1026 AGTACCGATACCGGGAATCAAGTCGGTAAGACATGTTGAAGATAATTTGGGTGCTCTGGG 1085
Query 1058 ATGGAAACTTACAAATGATGAACAGCTGCAGTTAGAATATGCAGCAAAAGAATCACCGAA 1117
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 1086 ATGGAAACTTACAAATGATGAACAGCTTCAGTTAGAATATGCAGCTAAAGAATCACCAAA 1145
Query 1118 GTCGATGATTCAGAACATTTTTCAAACAAGATGATATGATAAGAGAAGATGCTTATACA- 1176
||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1146 GTCAATGATTCAGAATATTTTTCAGACAAGATGATAGGATAAGAGAAGATGCTTATACAC 1205
Query 1177 -TCTAGACCACAAAATGAGAACAATGTGTATAAGTAGAAGTGTTTAATCTACTTCTATAT 1235
||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | |
Sbjct 1206 ATCTAGACCACAAA-TGAGAACAATGTGTATAAGTAGAAGT-TTTAATCTACTTCT-T-T 1261
Query 1236 ATATATGCACATATTGTGAAGAA 1258
|||||||||||||||||||||||
Sbjct 1262 ATATATGCACATATTGTGAAGAA 1284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61897271985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5