BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495435
Length=944
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53588.1 | Symbols: CPuORF50 | conserved peptide upstream op... 1236 0.0
AT5G53590.1 | Symbols: | SAUR-like auxin-responsive protein fa... 1236 0.0
> AT5G53588.1 | Symbols: CPuORF50 | conserved peptide upstream
open reading frame 50 | chr5:21771811-21772794 FORWARD LENGTH=984
Length=984
Score = 1236 bits (669), Expect = 0.0
Identities = 865/952 (91%), Gaps = 43/952 (5%)
Strand=Plus/Plus
Query 27 CTCTTCATGCTTAGCCTATCATGAGCAACATCCCTAGATCTCTCACCGACTCAGATCTTT 86
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 38 CTCTTCATGCTTAGCCTATCATGAGCAACATCCCTAGATCTCTCACCGACTCAGATCTTT 97
Query 87 CTCT-CTTCCTTCTCATTATATCTTCTGCTGTTGATCCTTGGCCTTTTTCTATCACTGTT 145
|||| || | |||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 98 CTCTATTTAC-TCTCATAATCTCTTCTGCTGTTGATCCTTGGCCTTTTTCTATCACCGTT 156
Query 146 TTTTAGCATCAAC-AACCTCACCGGAAAATCTCTAA-AA--ACCACCTTTTAACACTTCT 201
||||||||||||| || ||||||||||||||||||| || |||||| ||||||||||||
Sbjct 157 TTTTAGCATCAACAAAACTCACCGGAAAATCTCTAACAACCACCACCGTTTAACACTTCT 216
Query 202 CTTCCTCCTCGTCGATCG-TTTT-AACCAATCTTTGTGTGTTTCTTGTTTGGTTTTTCGG 259
|||||||||||||||||| |||| |||||||| || ||||||||||||||||||||||||
Sbjct 217 CTTCCTCCTCGTCGATCGTTTTTAAACCAATC-TT-TGTGTTTCTTGTTTGGTTTTTCGG 274
Query 260 TGAAAAAAGATTCCTTCTTCTTAATGGGTTTTGAAGAAAACCAAAAACAGAGTCCAAAAC 319
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 TG-AAAAAGATTCCTTCTTCTTAATGGGTTTTGAAGAAAACCAAAAACAGAGTCCAAAAC 333
Query 320 AGAGTCCGAATCAGATCAAGCATATGGTGTTCAACTTTCACTTTCATGTTCCTCATCTCC 379
||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 334 AGAGTCCGAATCATATCAAGCATATGGTGTTCAAGTTCCACTTCCATGTTCCTCATCTCC 393
Query 380 ACATACTCcatcatcatcaccatcatcatca---tGATGTTCCTAAAGGCTGTGTAGCGA 436
||||||||| |||||||||||| || || || ||||||||||||||||||||||||||
Sbjct 394 ACATACTCCCTCATCATCACCACCACCACCACCATGATGTTCCTAAAGGCTGTGTAGCGA 453
Query 437 TTATGGTGGGACATGAAGACGATGAAGAAGGTCTACACAGATTTGTTGTTCCGTTGGTGT 496
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 454 TTATGGTGGGACACGAAGACGATGAAGAAGGTCTACATAGATTTGTTGTTCCGTTGGTGT 513
Query 497 TCTTGAGTCATCCTTTGTTCTTGGATCTCTTGAAAGAAGCTGAAAAAGAGTATGGATTCA 556
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 TCTTGAGCCATCCTTTGTTCTTGGATCTCTTGAAAGAAGCTGAAAAAGAGTATGGATTCA 573
Query 557 AGCACGATGGTCCGATTACTATTCCTTGCTGTGTTGATGAGTTTAAGCATGTTCAAGAAA 616
|||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 574 AGCATGATGGTCCGATTACGATTCCTTGCGGTGTTGATGAGTTTAAGCATGTTCAAGAAG 633
Query 617 TTATCGACGAGGAGACTCATCGCCGTCATAGTCACGGTGGTCACAGCCACAACAACCATA 676
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 634 TTATCGACGAGGAGACTCATCGCCGTCATAGTCACGGTGGTCACGGCCACAACAACCATA 693
Query 677 ACCACCACAACAACCATCTACGTTGTTTTTAAAGATCTCTAATTCGATTTGTTGGTTTGC 736
|||| |||||||||||| | || ||||| ||||||||| ||||||||||||||||||||
Sbjct 694 ACCATCACAACAACCATTTGCGATGTTTCTAAAGATCTATAATTCGATTTGTTGGTTTG- 752
Query 737 TCTGGTTTGGTTTGACATGTAATTGGTTTGATTTGACAGATTTCTCTTTTGAGATTGTTT 796
| |||||||||| |||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 753 ---G-TTTGGTTTGAGATGTCATTGGTTTGATTTGACAGATTTCTCTTTTGAGATTGATT 808
Query 797 AGTTTGCTTAA-ttttt--ttt--G--A-T--GATGATGAT-A-A--T-GAT---GA--A 836
||||||||||| ||||| ||| | | | ||||||||| | | | ||| || |
Sbjct 809 AGTTTGCTTAACTTTTTGCTTTTAGTTAGTTTGATGATGATGATAAATTGATAATGATGA 868
Query 837 AAAA-TCAAGAGAGCCATTAAATGTGAATGCtttttttttAAG--AA-TGTAATCGTGAG 892
|||| |||| ||||| ||| ||||||| | ||||||||| || ||||||||||||
Sbjct 869 AAAAATCAAAAGAGCAATTGAATGTGATTTTTTTTTTTTTTTTTTAAATGTAATCGTGAG 928
Query 893 AAATAAGGGAATAATCATATTATTTGATTTTTATTTTATTGAAAGGAATGTG 944
|||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 929 GAATAAGGGAAGAATCATATTATTTGATTTTTATTTTATGGAAAGGAATGTG 980
> AT5G53590.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:21771811-21772794 FORWARD LENGTH=984
Length=984
Score = 1236 bits (669), Expect = 0.0
Identities = 865/952 (91%), Gaps = 43/952 (5%)
Strand=Plus/Plus
Query 27 CTCTTCATGCTTAGCCTATCATGAGCAACATCCCTAGATCTCTCACCGACTCAGATCTTT 86
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 38 CTCTTCATGCTTAGCCTATCATGAGCAACATCCCTAGATCTCTCACCGACTCAGATCTTT 97
Query 87 CTCT-CTTCCTTCTCATTATATCTTCTGCTGTTGATCCTTGGCCTTTTTCTATCACTGTT 145
|||| || | |||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 98 CTCTATTTAC-TCTCATAATCTCTTCTGCTGTTGATCCTTGGCCTTTTTCTATCACCGTT 156
Query 146 TTTTAGCATCAAC-AACCTCACCGGAAAATCTCTAA-AA--ACCACCTTTTAACACTTCT 201
||||||||||||| || ||||||||||||||||||| || |||||| ||||||||||||
Sbjct 157 TTTTAGCATCAACAAAACTCACCGGAAAATCTCTAACAACCACCACCGTTTAACACTTCT 216
Query 202 CTTCCTCCTCGTCGATCG-TTTT-AACCAATCTTTGTGTGTTTCTTGTTTGGTTTTTCGG 259
|||||||||||||||||| |||| |||||||| || ||||||||||||||||||||||||
Sbjct 217 CTTCCTCCTCGTCGATCGTTTTTAAACCAATC-TT-TGTGTTTCTTGTTTGGTTTTTCGG 274
Query 260 TGAAAAAAGATTCCTTCTTCTTAATGGGTTTTGAAGAAAACCAAAAACAGAGTCCAAAAC 319
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 TG-AAAAAGATTCCTTCTTCTTAATGGGTTTTGAAGAAAACCAAAAACAGAGTCCAAAAC 333
Query 320 AGAGTCCGAATCAGATCAAGCATATGGTGTTCAACTTTCACTTTCATGTTCCTCATCTCC 379
||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 334 AGAGTCCGAATCATATCAAGCATATGGTGTTCAAGTTCCACTTCCATGTTCCTCATCTCC 393
Query 380 ACATACTCcatcatcatcaccatcatcatca---tGATGTTCCTAAAGGCTGTGTAGCGA 436
||||||||| |||||||||||| || || || ||||||||||||||||||||||||||
Sbjct 394 ACATACTCCCTCATCATCACCACCACCACCACCATGATGTTCCTAAAGGCTGTGTAGCGA 453
Query 437 TTATGGTGGGACATGAAGACGATGAAGAAGGTCTACACAGATTTGTTGTTCCGTTGGTGT 496
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 454 TTATGGTGGGACACGAAGACGATGAAGAAGGTCTACATAGATTTGTTGTTCCGTTGGTGT 513
Query 497 TCTTGAGTCATCCTTTGTTCTTGGATCTCTTGAAAGAAGCTGAAAAAGAGTATGGATTCA 556
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 TCTTGAGCCATCCTTTGTTCTTGGATCTCTTGAAAGAAGCTGAAAAAGAGTATGGATTCA 573
Query 557 AGCACGATGGTCCGATTACTATTCCTTGCTGTGTTGATGAGTTTAAGCATGTTCAAGAAA 616
|||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 574 AGCATGATGGTCCGATTACGATTCCTTGCGGTGTTGATGAGTTTAAGCATGTTCAAGAAG 633
Query 617 TTATCGACGAGGAGACTCATCGCCGTCATAGTCACGGTGGTCACAGCCACAACAACCATA 676
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 634 TTATCGACGAGGAGACTCATCGCCGTCATAGTCACGGTGGTCACGGCCACAACAACCATA 693
Query 677 ACCACCACAACAACCATCTACGTTGTTTTTAAAGATCTCTAATTCGATTTGTTGGTTTGC 736
|||| |||||||||||| | || ||||| ||||||||| ||||||||||||||||||||
Sbjct 694 ACCATCACAACAACCATTTGCGATGTTTCTAAAGATCTATAATTCGATTTGTTGGTTTG- 752
Query 737 TCTGGTTTGGTTTGACATGTAATTGGTTTGATTTGACAGATTTCTCTTTTGAGATTGTTT 796
| |||||||||| |||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 753 ---G-TTTGGTTTGAGATGTCATTGGTTTGATTTGACAGATTTCTCTTTTGAGATTGATT 808
Query 797 AGTTTGCTTAA-ttttt--ttt--G--A-T--GATGATGAT-A-A--T-GAT---GA--A 836
||||||||||| ||||| ||| | | | ||||||||| | | | ||| || |
Sbjct 809 AGTTTGCTTAACTTTTTGCTTTTAGTTAGTTTGATGATGATGATAAATTGATAATGATGA 868
Query 837 AAAA-TCAAGAGAGCCATTAAATGTGAATGCtttttttttAAG--AA-TGTAATCGTGAG 892
|||| |||| ||||| ||| ||||||| | ||||||||| || ||||||||||||
Sbjct 869 AAAAATCAAAAGAGCAATTGAATGTGATTTTTTTTTTTTTTTTTTAAATGTAATCGTGAG 928
Query 893 AAATAAGGGAATAATCATATTATTTGATTTTTATTTTATTGAAAGGAATGTG 944
|||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 929 GAATAAGGGAAGAATCATATTATTTGATTTTTATTTTATGGAAAGGAATGTG 980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46165181093
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5