BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg495444

Length=444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G53650.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   678    0.0  


> AT5G53650.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant 
structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; 
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | 
chr5:21791177-21792441 FORWARD LENGTH=506
Length=506

 Score =  678 bits (367),  Expect = 0.0
 Identities = 426/453 (94%), Gaps = 9/453 (2%)
 Strand=Plus/Plus

Query  1    AAAATTCCTAGAATCGGAGAAATTTGagaagagaacgaaggaagaagaag-a-a-g---G  54
            ||||||| |||||||||||| ||||||||||||||||||||||||||||| | | |   |
Sbjct  29   AAAATTCGTAGAATCGGAGAGATTTGAGAAGAGAACGAAGGAAGAAGAAGAAGAGGAACG  88

Query  55   ATGGGGTACGTGTTGAGGGTAAGATTGGCTTCTTTCTTCGCCGGAGCTGCGACTGCGTCT  114
            |||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||
Sbjct  89   ATGGGGTACGTGTTTAGAGTACGATTGGCTTCTTTCTTCGCCGGAGCTGCGACTGCGTCT  148

Query  115  TTTATCGGACTCTCTGTTCTCTACAAGGATTACAAAGTCGCTCACGAATCGATTTCTCAG  174
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TTTATCGGACTCTCCGTTCTCTACAAGGATTACAAAGTCGCTCACGAATCGATTTCTCAG  208

Query  175  CAGGCAAAGTCTTTTCATGACTCTCTGGATAGAAGGATCTCTACTCTTGAAAGCTTGAGA  234
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  209  CAGGCGAAGTCTTTTCATGACTCTCTGGATAGAAGGATCTCTACTCTTGAAAGCTTGAGA  268

Query  235  CAAACTGAAGCTCCTCAGCTTGCTGAGACAACTGAATAGTA-TCTGTTTCGACATTGA-C  292
            |||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
Sbjct  269  CAAAGTGAAGCTCCTCAGCTTGCTGAGACAACTGAATAGTAATCTGTCTCGACATTGAAC  328

Query  293  ACTCTCTGCTTTGCAATGATGATTTGAGTTGAGATACTCTTTTT-CGCTTTTTTGAATAA  351
            ||||||||||| ||||||||| ||||||||||||| |||||||| || |||| |||||||
Sbjct  329  ACTCTCTGCTTGGCAATGATGTTTTGAGTTGAGATGCTCTTTTTTCGGTTTTATGAATAA  388

Query  352  CTTGGGAGTTCTTGTATGACTCTACTGTTATGAAACAATGAAGTTTAAAGTAGTCTACAA  411
            ||||| ||||||||||||||||||||||||| |||||||||||||||| |||||| ||||
Sbjct  389  CTTGGAAGTTCTTGTATGACTCTACTGTTATAAAACAATGAAGTTTAAGGTAGTCGACAA  448

Query  412  TGGATTGAAACTTGCTGTAACACTTGCCATGAA  444
            |||||||||||||||||||||||||||||||||
Sbjct  449  TGGATTGAAACTTGCTGTAACACTTGCCATGAA  481



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21112454580


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5