BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495449
Length=839
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53730.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 1299 0.0
> AT5G53730.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr5:21807974-21808810
REVERSE LENGTH=837
Length=837
Score = 1299 bits (703), Expect = 0.0
Identities = 796/841 (95%), Gaps = 6/841 (1%)
Strand=Plus/Plus
Query 1 Gctttcttcttccactctttattaacccattcatcttctctccttcttctctatccctct 60
||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||
Sbjct 1 GCTTTCTTCTTCCACTCTTTATTAACCCATTCACCTTCTCTCATTCTTCTCTGTCCCTCT 60
Query 61 tcttggtcttctccatcatcatcatcatcatctctccAAATGTCTCAAATCTCCATTACC 120
|||||||||||| ||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 61 TCTTGGTCTTCTTCATCATCATCATC-TC-TCTCTCCAAATGTCTCAAATCTCCATAACT 118
Query 121 TCTCCAAAACATTGTGCCAAGAAAGGAGGGATTAACATCAACAATCGCCACAAGAAACTC 180
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TCTCCAAAACATTGCGCCAAGAAAGGAGGGATTAACATCAACAATCGCCACAAGAAACTA 178
Query 181 TTTTTCACATTCTCAACTTTCTTCACCGGCCTTCTCCTCGTCATCTTCCTCGTTTGGCTC 240
|||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||
Sbjct 179 TTTTTCACATTCTCAACTTTCTTCTCTGGCCTTCTCCTCATCATCTTCCTCGTTTGGCTC 238
Query 241 ATCCTCCACCCCGAGAAACCCGAGTTCTCCCTCACCGAAGCCGATATATACAGcctcaac 300
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 239 ATCCTCCACCCCGAGAGACCCGAGTTCTCCCTCACAGAAGCCGATATATACAGCCTCAAC 298
Query 301 ctcacctcctcctccactcatctcctcaactcttcaatccaactcactctcttctccaaA 360
|||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 299 CTCACCACCTCCTCCACTCATCTCCTCAACTCTTCAGTCCAACTAACTCTCTTCTCCAAA 358
Query 361 AACCCTAACAAAAAAGTTGGTATCTACTACGACAAGCTACTCGTATACGCAGCGTATAGG 420
||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 359 AACCCTAACAAAAAAGTCGGGATCTACTACGACAAGCTACTCGTATATGCAGCGTATAGG 418
Query 421 GGACAACAAATCACATCGGAGGCTTCTCTACCGCCTTTTTATCAATCTCATGAAGAAATC 480
||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 419 GGACAACAAATCACATCAGAGGCCTCTCTACCGCCTTTTTATCAATCCCATGAAGAAATC 478
Query 481 AATCTCTTGACAGCGTTTCTTCAAGGGACTGAGCTACCCGTTGCTCAGTCCTTTGGTTAT 540
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 479 AATCTCTTGACAGCGTTTCTTCAAGGGACTGAGCTACCCGTTGCCCAGTCCTTTGGTTAT 538
Query 541 CAAATCAGTCGTGATCGGTCAACTGGTAAAATAATCATCGGTTTGAAGATGGACGGGAAG 600
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 539 CAAATCAGTCGTGAACGGTCAACTGGTAAAATAATCATCGGTATGAAGATGGACGGGAAA 598
Query 601 CTACGGTGGAAGATCGGGACATGGGTCTCTGGCGCATACCGGTTTAATGTGAACTGTCTT 660
||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct 599 CTACGGTGGAAGATCGGGACATGGGTCTCGGGTGCATACCGGTTTAATGTGAATTGTCTT 658
Query 661 GCAATTGTGGCTTTTGGACA-GAACATGACCACTCCTCCATTAGCTTCAATACAAGGGAC 719
|||||||||||||||||| | |||||||||||||||||| ||||||||| ||||||||||
Sbjct 659 GCAATTGTGGCTTTTGGA-ATGAACATGACCACTCCTCCCTTAGCTTCATTACAAGGGAC 717
Query 720 TCGTTGCTCTACAACTATATGAGATTATATAGAATCATCAACCACATATACACTATAGTT 779
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 718 TCGTTGCTCTACAACTATATGAGACTATATAGAATAATCAACCACATATACACTATAGTT 777
Query 780 TCTTTCACTTATGTGCAATCGTTCTCTT-TGTCGATGTTTGTGTGCTGGTATTTAGTACT 838
| ||||||||||| ||||| ||||| || |||||| ||||||| ||||||| ||||||||
Sbjct 778 TTTTTCACTTATGCGCAATTGTTCT-TTCTGTCGACGTTTGTGGGCTGGTAATTAGTACT 836
Query 839 T 839
|
Sbjct 837 T 837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40890595658
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5