BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg495450

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G53742.1 | Symbols:  | Protein of unknown function (DUF1278)...   481    2e-135
  AT5G54062.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   448    2e-125
  AT5G53905.1 | Symbols:  | unknown protein; CONTAINS InterPro DO...   152    2e-36 


> AT5G53742.1 | Symbols:  | Protein of unknown function (DUF1278) 
| chr5:21813671-21814018 FORWARD LENGTH=348
Length=348

 Score =  481 bits (260),  Expect = 2e-135
 Identities = 318/346 (92%), Gaps = 4/346 (1%)
 Strand=Plus/Plus

Query  1    ATGTTTCCGTTGAATCCATTGTTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATC  60
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTTTCCGTTGAATCCATTATTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATC  60

Query  61   TCAGGTGCACCCGCACACACGACACCGCAATTCCCTT-TCATCCCTGGTTCTCCGATCGA  119
            || || |||||  ||||||||| ||| ||||||| || ||||||||||||||||||||||
Sbjct  61   TCTGGCGCACCAACACACACGAAACCTCAATTCC-TTGTCATCCCTGGTTCTCCGATCGA  119

Query  120  CCTCACAAAATGTTTGTCATCACTTGTCAACGTTGAAGGTTGTGTAACTGAAATCCACAA  179
             |||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||
Sbjct  120  TCTCACAAAATGTTTGTCATCACTTGTTAACGTTGAAGGTTGCGTAACTGAAATCTACAA  179

Query  180  AGCAGTTTTCACAGGAAAGTTTGATAATGTTGCACCA-ATGTGCTGCAAGGCGTTTTCAG  238
            | ||||||||||||||||||||| |||||||| |  | ||||||||||||||||||||||
Sbjct  180  ATCAGTTTTCACAGGAAAGTTTGGTAATGTTGGAT-ATATGTGCTGCAAGGCGTTTTCAG  238

Query  239  CTGTGGATGCCAAATGTTGGCCACAAATGTTTCCGTTTAATCCATTCTTCCCTCCTCTTC  298
            |||||||||  |||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct  239  CTGTGGATGTAAAATGTTGGCCACAAATGTTTCCGCTAAATCCGTTCTTCCCTCCTCTTC  298

Query  299  TGAAGAATGAATGTTCTCGTATCAACGAAGCCACTCCTACACACAA  344
            | ||||| |||||||||| |||||||| ||||||||||||||||||
Sbjct  299  TCAAGAAGGAATGTTCTCCTATCAACGCAGCCACTCCTACACACAA  344


> AT5G54062.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: 
Protein of unknown function DUF1278 (InterPro:IPR010701); 
BEST Arabidopsis thaliana protein match is: Protein of unknown 
function (DUF1278) (TAIR:AT5G53742.1); Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21938793-21939623 
FORWARD LENGTH=831
Length=831

 Score =  448 bits (242),  Expect = 2e-125
 Identities = 312/346 (90%), Gaps = 4/346 (1%)
 Strand=Plus/Plus

Query  1    ATGTTTCCGTTGAATCCATTGTTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATC  60
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  341  ATGTTTCCGTTGAATCCATTATTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATC  400

Query  61   TCAGGTGCACCCGCACACACGACACCGCAATTCCCTTTCATCCCTGGTTCTCCGATCGAC  120
            ||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||| 
Sbjct  401  TCAGGTGCACCAGCACACAAGACACCGCAATTCCCTGTCATCCCTGGTTCTCCGATCGAT  460

Query  121  CTCACAAAATGTTTGTCATCACTTGTCAACGTTGAAGGTTGTGTAACTGAAATCCACAAA  180
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct  461  CTCACAAAATGTTTGTCATCACTTGTCAACGTTCAAGGTTGTGTAACTGAAATCTACAAA  520

Query  181  GCAGTTTTCACAGGAAAGTTTGATAATGTTGCACCAATGTGCTGCAAGGCGTTT-TCAGC  239
             |||||||||||||||||| |||||| || | |   |||||||||||||||||| |  ||
Sbjct  521  TCAGTTTTCACAGGAAAGTGTGATAACGTAGGATTTATGTGCTGCAAGGCGTTTATG-GC  579

Query  240  TGTGGATGCCAAATGTTGGCCACAAATGTTTCCGTTTAATCCATTCTTCCCTCCTCTTCT  299
            ||||||||| |||||||||||| ||||||||||  | ||||| |||||||||||||| ||
Sbjct  580  TGTGGATGCAAAATGTTGGCCAAAAATGTTTCCACTAAATCCGTTCTTCCCTCCTCTCCT  639

Query  300  GAAGAATGAATGTTCTCGTATCAACGA-AGCCACTCCTACACACAA  344
             || |||| ||||||||| |||||| | | |  |||||||||||||
Sbjct  640  CAAAAATGTATGTTCTCGCATCAAC-ACATCTGCTCCTACACACAA  684


> AT5G53905.1 | Symbols:  | unknown protein; CONTAINS InterPro 
DOMAIN/s: Protein of unknown function DUF1278 (InterPro:IPR010701); 
BEST Arabidopsis thaliana protein match is: unknown 
protein (TAIR:AT5G54062.1); Has 30201 Blast hits to 17322 proteins 
in 780 species: Archae - 12; Bacteria - 1396; Metazoa 
- 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes 
- 2996 (source: NCBI BLink). | chr5:21888148-21889254 
REVERSE LENGTH=507
Length=507

 Score =  152 bits (82),  Expect = 2e-36
 Identities = 98/106 (92%), Gaps = 0/106 (0%)
 Strand=Plus/Plus

Query  1    ATGTTTCCGTTGAATCCATTGTTCCCTCCTCTTCTCAAGGATGGTTGCTCTCGCATCATC  60
            ||||||||  |||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct  202  ATGTTTCCACTGAATCCATTTTTCCCTCCTCTTGTCAAGGATGGTTGCTCTCGCATCATC  261

Query  61   TCAGGTGCACCCGCACACACGACACCGCAATTCCCTTTCATCCCTG  106
            ||| |||||||||||||||||||||| ||| ||||| |||||||||
Sbjct  262  TCAAGTGCACCCGCACACACGACACCTCAACTCCCTGTCATCCCTG  307



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16085679680


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5