BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495451
Length=1396
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53750.1 | Symbols: | CBS domain-containing protein | chr5:... 2122 0.0
AT4G27460.1 | Symbols: | Cystathionine beta-synthase (CBS) fam... 305 6e-82
> AT5G53750.1 | Symbols: | CBS domain-containing protein | chr5:21817366-21818843
FORWARD LENGTH=1397
Length=1397
Score = 2122 bits (1149), Expect = 0.0
Identities = 1323/1405 (94%), Gaps = 19/1405 (1%)
Strand=Plus/Plus
Query 1 ATCTTCTCCTTCACATTCTCTGC-------AAAAACCAAATTCTTCTCTTATGGCATTAA 53
||||||||||||||||||||||| ||||| |||||||||| ||||||||||||
Sbjct 1 ATCTTCTCCTTCACATTCTCTGCAAAAAAAAAAAAAAAAATTCTTCTTTTATGGCATTAA 60
Query 54 CCCTTTTGTCTCACAAAGTATCTGACCTCTGTATCGGTAAGCCACCTTTATGTTGTCTCT 113
|||||||||||||| || |||||||||||||||||||||||||||||||| | |||||||
Sbjct 61 CCCTTTTGTCTCACGAATTATCTGACCTCTGTATCGGTAAGCCACCTTTACGGTGTCTCT 120
Query 114 CCGTCGTCACAGCCACCGTCTCTGACGCCATCGCCGCTCTCAAATCCTCTGATGAACCAT 173
|||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| |
Sbjct 121 CCGTCGCCACAGCCACCGTAGCTGACGCCATCGCCGCTCTCAAATCCTCTGACGAACCGT 180
Query 174 ACCTCACCGTATGGAGCTGTAATCACGATGAGAAAACAGAGGATAATGATAAGTGTGAGT 233
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 TCCTCACCGTATGGAGCTGTAATCACGATGAGAAAACAGATGATAATGATAAGTGTGAGT 240
Query 234 GTTTGGGTAAGATCTGTATGGCTGATGTAATCTGTTACCTATCGAAATTCGACAACAATG 293
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 GTTTGGGTAAGATCTGTATGGCTGATGTAATCTGTTACCTATCCAAATTCGACAACAATG 300
Query 294 TTTTGTCTCTTTCCTCTGCTTTCGACGAATCTGTCTCTGTTCTTCTTCCCAAATCTTGTT 353
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 301 TTTTGTCTCTTTCCTCTGCTTTCGACGCATCTGTCTCTGTTCTTCTTCCCAAATCTCGTG 360
Query 354 CTCTCGTCGTCCATGTTCAATCTTCTTGCAATTTGATTGAAGCTATTGATCTGATAATCA 413
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 CCCTCGTCGTCCATGTTCAATCTTCTTGCAGTTTGATTGAAGCTATTGATCTGATAATCA 420
Query 414 AAGGAGCACAGAATCTGATTGTTCCGATTCAGACGAAATCAATCACAAAGAGAAGACAAC 473
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 421 AAGGAGCACAGAATCTGATTGTTCCGATTCATACGAAATCAATCACAAAGAGAAGACAAC 480
Query 474 AACAAAAACTTTTGACAA-GAAACGTCGTCGTTTCCCTCACCAACACAACTTCAACAACC 532
||||||||||| ||| || |||||||||||||||| ||||||||| ||||||||||||||
Sbjct 481 AACAAAAACTTCTGA-AACGAAACGTCGTCGTTTCACTCACCAACGCAACTTCAACAACC 539
Query 533 CATAAGAACAGCCGACAATTCTGCTGGATCACACAAGAAGATATAATACGATTCCTTCTC 592
|| || ||||||||| ||||||||||||||||||||||||| || || ||||||||||||
Sbjct 540 CACAAAAACAGCCGAGAATTCTGCTGGATCACACAAGAAGACATTATTCGATTCCTTCTC 599
Query 593 GATTCCATTAGCGTTTTCTCTCCATTACCGTCGCTTTCTATCTCCGATCTTGGAGTTATC 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GATTCCATTAGCGTTTTCTCTCCATTACCGTCGCTTTCTATCTCCGATCTTGGAGTTATC 659
Query 653 AATAGTACACACACTATCCTCGCCGTTGATTATTACTCCTCAGCTGCTTCCGCCGTCTCC 712
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 AATAGTACACACACTATCCTCGCCGTTGATTACTACTCCTCAGCTGCTTCCGCCGTCTCT 719
Query 713 ACCATCTCTCGTGCTATCTTGGACAATGTCTCTGTCGCGGTGGTTGATAAAGGATGTGAT 772
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 720 GCCATCTCTCGTGCCATCTTGGACAATGTCTCTGTCGCGGTGGTTGGTAAAGGATGTGAT 779
Query 773 CAAGAAGATCCATGTATGGCTTTGATAGGTGAGATTTCACCGATGACACTCGCTTGTTGC 832
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||
Sbjct 780 CAAGAAGATCCATGTATGGTTTTGATAGGCGAGATTTCACCGATGACACTCGCTTGCTGC 839
Query 833 GATGAAACCGCTGTCGCAGCGGTTGCTACACTCTCTGCTGGAGATCTAATGTCGTATATC 892
|||||||| || || ||||||||||||||||||||||| |||||| ||||||| ||||||
Sbjct 840 GATGAAACTGCCGTAGCAGCGGTTGCTACACTCTCTGCCGGAGATTTAATGTCCTATATC 899
Query 893 GACGGTAGTGGTCCGCCCGAGAGTCTAGTTGGAGTTGTTAGGAATCGTTTGGAAGATAAA 952
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 900 GACGGTAGTGGTCCGCCGGAGAGTCTAGTTGGAGTAGTTAGGAATCGTTTGGAAGATAAA 959
Query 953 GGGATGGTTGGATTGATCTCACTCATTGAATCTTTGTCGTTGTCGTCGGGGTCTTCGTCG 1012
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 960 GGGATGGTTGGATTAATCTCACTCATTGATTCTTTGTCGTTGTCGTCGGGGTCTTCCTCG 1019
Query 1013 GATGAAGAATCTCCGGCGGGGAGGACGAGAATGACGTCTTCGTATGGGAGGTCGGTTAGT 1072
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||
Sbjct 1020 GATGAAGAATCTCCGGCGGGGAAGACGAGAATGACTTCTTCGTATGGGAGGTCGGTGAGT 1079
Query 1073 AGCGCGGCGAGGATGTCGAGGAAATCGGTGGCGATAGTGTGTAATCGGAAGAGTTCGTTA 1132
||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1080 AGCGCGGCGAGGATGGCTAGGAAATCGGTGGCGATAGTGTGTAATCGGAAGAGTTCTTTA 1139
Query 1133 ATGGCGGTGATGATACAAGCTATTGCTCATAGAGTGAGTTATGTGTGGGTGATTGATGAA 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 ATGGCGGTGATGATACAAGCTATTGCTCATAGAGTGAGTTATGTGTGGGTGATTGATGAA 1199
Query 1193 GATGGTTGTTTGATTGGTATGGTTACTTTTGTTGATATTTTGAAACTTTTTAGGGAATTT 1252
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1200 GATGGTTGTTTGATTGGTATGGTTACTTTTGTTGATATATTGAAACTTTTTAGGGAATTT 1259
Query 1253 TTGGATGGTGAAAACTAAAATCATAAGATATACTTCAGTTTTATTTTCATTTTTGTTAGA 1312
||||||| ||||||||||||||||| |||||| |||||||||||||| ||||||||||||
Sbjct 1260 TTGGATGATGAAAACTAAAATCATATGATATAGTTCAGTTTTATTTTGATTTTTGTTAGA 1319
Query 1313 AATTATTGAAACCTAGCAACAAAAATT-GTTTGTTTAAGATAATCTTTTGGTGAAATAGG 1371
||||||||||| |||||||| |||||| ||| ||||||| | | ||| |||||||
Sbjct 1320 AATTATTGAAATCTAGCAACGAAAATTTGTT-GTTTAAG-T--T-----GGTTAAATAGG 1370
Query 1372 CCATAATACAAAAGTTCTTGCAATA 1396
|||||||||||||||||||||||||
Sbjct 1371 CCATAATACAAAAGTTCTTGCAATA 1395
> AT4G27460.1 | Symbols: | Cystathionine beta-synthase (CBS) family
protein | chr4:13732910-13734304 FORWARD LENGTH=1246
Length=1246
Score = 305 bits (165), Expect = 6e-82
Identities = 910/1251 (73%), Gaps = 125/1251 (10%)
Strand=Plus/Plus
Query 44 ATGGCATTAACCCTTTTGT-CTCACAAAGTATCTGACCTCTGTATCGGTAAGCCACCT-T 101
|||||| | ||||| | | || |||| || || ||||||||| |||| || || ||| |
Sbjct 30 ATGGCACTGTCCCTTCTCTCCT-ACAACGTCTCCGACCTCTGTCTCGGCAAACCTCCTCT 88
Query 102 TATGTTGTCTCTCCGTCGTC-ACAGCCACCGTCTCTGACGCCATCGCCGCTCTCAAATCC 160
| ||||||| ||| || || | || |||| || ||||||||||| || |||||||||
Sbjct 89 T-CGTTGTCTTTCC-TCCTCTTCCTCCTCCGTATCCGACGCCATCGCTGCCCTCAAATCC 146
Query 161 TCTGATGAAC-CATACCTCACCGTATGGAGCTGTAATCACGATGAGAAAACAGAGGATAA 219
||||| | || | | |||| |||| |||| || |||||||| || || | ||||
Sbjct 147 TCTGAAG-ACACTTTCCTCTCCGTCTGGAATTGCAATCACGA--CGATGAC--A--ATAA 199
Query 220 TGATA-AGTGTGAGTGTTTGGGTAAGATCTGTATGGCTGATGTAATCTGTTACCTATCGA 278
| | |||| ||||| ||||| || || | |||||||| || ||||| || | || |
Sbjct 200 -CACAGAGTGCGAGTGCTTGGGGAAAATATCAATGGCTGACGTCATCTGCCACTTGTCCA 258
Query 279 AATTCGACAACAATGTTTTGTCTCTTTC-CTCTGCTTTCGACGAATCTGTCTCTGTTCTT 337
|| ||| | ||| | | || || ||| || || ||| ||||||||||||
Sbjct 259 AA---GAC--C-ATG----ACCACAGTCTCTGTGCCTTAAACTCATCCGTCTCTGTTCTT 308
Query 338 CTTCCCAAATCTTGTTCTC-TCGTCGTCCATGTTCAATCTTCTTGCAATTTGATTGAAGC 396
|| |||||| || |||| | | ||| ||||||||||| | || |||| || || |||||
Sbjct 309 CTCCCCAAAACTCGTTC-CATTGTCCTCCATGTTCAACCATCCTGCAGCTTAATAGAAGC 367
Query 397 TATTGATCTGATAATCAAAGGAGCACAGAATCTGATTGTTCCGATTCAGACGAAATCAAT 456
|||||||||||||||||||||||||||||||||||||| ||||| || || ||| | |
Sbjct 368 CATTGATCTGATAATCAAAGGAGCACAGAATCTGATTGTCCCGATACATAC-AAAGCCCT 426
Query 457 -CACAAAGAGAAGACAACAACAAAAACTTTTGACAAGAAACGTCGTCGTTTCCCTCACCA 515
||| |||| || | | || || || | ||||| ||| ||| | | | |||||
Sbjct 427 ACACTAAGA-AA-A-AGCAGCACAA-C----GACAA----CGTT-TCGGT-CAC-CACCA 471
Query 516 ACACAACTTCAACAACCCATAAGAACAGCCGACAATTCTGCTGGATCACACAAGAAGATA 575
| || | | || | | |||| | | || |||||||||||||||||||||||| |
Sbjct 472 -C-CA-C--C--CA-CTC----GAACGGACAACGATTCTGCTGGATCACACAAGAAGACA 519
Query 576 TAATAC-GATTCCTTCTCG-ATTCCATTAGC-GTTTTCTCTCCATTACC-GTCGCTTTCT 631
| || | | ||| | |||| |||| || || | |||||||| || || | || | ||
Sbjct 520 TCATTCAGTTTC-TCCTCGGATTC-ATC-GCCGCATTCTCTCCTTTGCCAG-CGATGTCC 575
Query 632 ATCTCCGATCTTGGAGTTATCAATAGTACACACACTA-TCCTCGCCGTTGATTATTACTC 690
|||| ||||| || || ||||| || |||||||| | | | || || ||||| ||||
Sbjct 576 CTCTCTGATCTCGGTGTCATCAACAGCACACACAC-AGTTGTTGCGGTCGATTACCACTC 634
Query 691 CTCAGCTGCTTCCGCCGTC-TC-CA-CCATCTCTCGT-GCTATCTTG--GAC-AATGTCT 743
|||||| | | |||| || || | || | || | ||| |||| | | || ||
Sbjct 635 CTCAGC-G-T-CCGCAGTTGTCTCTGCCGTATC-CAACGCT--CTTGCCGTCCAAAC-CT 687
Query 744 CTGTCGCGGTGGTTGATAAAGGATGTGATCAAGAAGATCCATGTATGGCTTTGATAGGTG 803
||||||| ||||| || || || | | || || || | || | ||||||| || |
Sbjct 688 CTGTCGCAGTGGTCGAC---GG-TGAGGG-A-GATGACCCTTTTACGTCTTTGATCGGCG 741
Query 804 AGATTTCACCGATGACACTCGCTTGTTGCGATGAAACCGCTG-TCGCAGCGGTTGCTACA 862
| || || ||||||||| | |||| ||||| || || || | | || ||||| || ||
Sbjct 742 AAATATCCCCGATGACATTAACTTGCTGCGACGAGACAGCAGCT-GCGGCGGTGGCGACG 800
Query 863 CTCTCTGCTGGAGATCTAATGTCGTATATCGACGGTAGTGG-TCCGCCCGAGAGTCTAGT 921
||||| ||||||||||| ||| |||| || ||||| || ||| || |||||||| ||
Sbjct 801 CTCTCCGCTGGAGATCTGATGGCGTACATAGACGG-AGCAAATCCTCCGGAGAGTCTTGT 859
Query 922 TGGAGTT-GTTAGGAATCGTTTGGAAGATAAAGGGATGG-TTGGATTGATCTCACTCATT 979
| || | |||||||| |||||||| |||||||| || | |||| ||||| || || ||
Sbjct 860 TC-AGATCGTTAGGAACCGTTTGGAGGATAAAGG-ATTGATTGGTTTGATGTCGCTT-TT 916
Query 980 -GAATCT-T-TG-TCGT-T--GTCGTCG--GGGTC-TTCGTCGGATGAAGAATCTCCGGC 1029
|| ||| | | || | | | ||||| |||| ||||||||| |||||| ||||
Sbjct 917 CGATTCTCTCTCATCTTATTCGACGTCGTCGGGTTATTCGTCGGAGGAAGAAGCTCC--- 973
Query 1030 GGGGAGGACGAGAATGACGTCTTCGTATGGGA-GGTCGGTTAGTAGCGCGGCGAGGATGT 1088
|| ||||| |||||| |||||| | ||||| | |||||| | || || |||
Sbjct 974 ----AGT--GAGAACGACGTC---GTATGG-ACGGTCGATGAGTAGCTCAGCAAGAATGG 1023
Query 1089 CGAGGAAATCGGTGGCGATAGTGTGTAATCGGAAGAGTTCGTTAATGGCGGTGATGATAC 1148
| ||||| |||| ||||||||||||||||| ||||| ||||||||||| |||||||| |
Sbjct 1024 CAAGGAAGTCGGAGGCGATAGTGTGTAATCCAAAGAGCTCGTTAATGGCAGTGATGATCC 1083
Query 1149 AAGCTATTGCTCATAGAGTGAGTTATGTGTGGGTGATTGATGAAG-ATGGTTGTTT-GAT 1206
|||| |||||||| |||||| || | ||||||| |||| |||| |||||||||| | |
Sbjct 1084 AAGCGGTTGCTCATCGAGTGAACTACGCGTGGGTGGTTGA-GAAGGATGGTTGTTTCG-T 1141
Query 1207 TGGTATGGTTACTTTTGTTGATATTTTGAAACTTTTTAGGGAATTTTTGGA 1257
||| |||||||||||||||||||| || ||| |||||||| ||||||||||
Sbjct 1142 TGGCATGGTTACTTTTGTTGATATCTTAAAAGTTTTTAGGAAATTTTTGGA 1192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68774746650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5