BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495453
Length=2148
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53760.1 | Symbols: MLO11, ATMLO11 | Seven transmembrane MLO... 3075 0.0
> AT5G53760.1 | Symbols: MLO11, ATMLO11 | Seven transmembrane MLO
family protein | chr5:21822486-21826450 FORWARD LENGTH=2361
Length=2361
Score = 3075 bits (1665), Expect = 0.0
Identities = 1895/2005 (95%), Gaps = 20/2005 (1%)
Strand=Plus/Plus
Query 99 AAAGCGTTTCCGAGTTTCTTGGAGTCTACAAATCTCAAAGTTTATGGGTTACGACCAAAC 158
||||| ||||| | |||||||||||||||| || ||||||||| |||||||| ||||||
Sbjct 271 AAAGCTTTTCCTAATTTCTTGGAGTCTACAGATTTCAAAGTTTCTGGGTTACTACCAAAG 330
Query 159 TAGAATCTCAGTTTTTGTCTTAAGCCAATCAGATATCTGCGATTCTGATTGTTAATTACT 218
||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| || |
Sbjct 331 TAGAATCTCAGTTTTTGTC-TAAGCTAATCAGATTTCTGCGATTCTGATTGTTAACTAAT 389
Query 219 CCAAGAACGCTAGATGGGTTTTTAAAGTTGAATTTGGGTAGAGAGGAGGAACTTGTTTTG 278
||||||||| | |||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 390 CCAAGAACGATCGATGGGGGTTTAAAGTTGAATTTGGGTCTAGAGGAGGAACTTGTTTTG 449
Query 279 TTTGTGTAAAGAATCCGACtttttttGAAAATGGGAGAAGGAGAAGAAAATGGTAATGAA 338
||| ||| ||||||| |||||| | ||||||||||||||||||||||||| ||||||
Sbjct 450 TTTTTGTGAAGAATCAGACTTTAAAAG-AAATGGGAGAAGGAGAAGAAAATGGAAATGAA 508
Query 339 GCAGATTCAAATGAGAGATCTTTGGCATTGTCACCTACTTGGTCTGTTGCTATAGTGTTG 398
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 509 GCAGATTCAAATGAGAGATCTTTGGCATTGTCACCTACTTGGTCTGTTGCTATTGTCTTG 568
Query 399 ACTGTCTTCGTTGTTGTTTCTTTGATCGTTGAGCGCTCCATTTACCGTCTTAGCACTTGG 458
||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 569 ACTGTTTTCGTTGTTGTTTCTTTGATCGTTGAGCGCTCCATTTATCGTCTCAGCACTTGG 628
Query 459 TTGAGGAAGACAAAGAGGAAACCTATGTTTGCTGCATTAGAGAAGATGAAAGAAGAGTTG 518
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 TTGAGAAAAACAAAGAGGAAACCTATGTTTGCTGCATTAGAGAAGATGAAAGAAGAGTTG 688
Query 519 ATGCTGCTTGGATTCATATCACTTCT-TCTAACAGCTACCTCTAGTACAATAGCCAACAT 577
||||||||||| ||||| |||||||| | ||||||||||||| |||||||||||||| ||
Sbjct 689 ATGCTGCTTGGCTTCATTTCACTTCTAT-TAACAGCTACCTCAAGTACAATAGCCAATAT 747
Query 578 ATGTGTCCCGTCAAGTTTCTACAACGACAGATTTGTTCCGTGTACACGATCTGAGATCCA 637
||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 748 ATGTGTCCCTTCAAGTTTCTACAATGACAGATTTCTTCCGTGTACACGATCTGAGATCCA 807
Query 638 AGAGGAGCTAGAAAGCGGTTCAACTGTCAAGCGGAATCTTTTAACAAAATCACTCTTTTT 697
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 808 AGAGGAGCTCGAAAGCGGTTCAACTGTCAAGCGGAATCTTTTAACAAAATCCCTCTTTTT 867
Query 698 CAACATCTTTAGGAGAAGGTTGGATGTCATAAAACGAACCACCTGCAGCGAGGGGCATGA 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 CAACATCTTTAGGAGAAGGTTGGATGTCATAAAACGAACCACCTGCAGCGAGGGGCATGA 927
Query 758 GCCGTTTGTTTCATATGAAGGCCTTGAACAGTTGCATCGCTTCATCTTTATAATGGCTGT 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 928 GCCGTTTGTTTCATATGAAGGCCTTGAACAGTTGCATCGCTTCATCTTTATAATGGCAGT 987
Query 818 TACACATGTAACTTACAGCTGCTTGACCATGCTCCTTGCAATCGTCAAGATTCATAGTTG 877
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 TACTCATGTAACTTATAGCTGCTTGACCATGCTCCTTGCAATCGTCAAGATTCATAGTTG 1047
Query 878 GAGGATCTGGGAAGATGTAGCTCGTATGGATCGACATGATTGCTTAACTGTGGTGGCACG 937
|||||| |||||||||||||||||| | ||| |||| ||||||||||||| |||||||||
Sbjct 1048 GAGGATATGGGAAGATGTAGCTCGTCTAGATAGACACGATTGCTTAACTGCGGTGGCACG 1107
Query 938 GGAGAAAATATTCCGAAGGCAAACAACGTTTGTCCAGTATCATTCATCAGCACCTATGGC 997
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1108 TGAAAAAATATTCCGAAGGCAAACAACGTTTGTCCAGTATCATACATCAGCACCTCTGGC 1167
Query 998 CAAGAATAG-ATTGCTTATATGGGTGACATGTTTCTTCCGGCAATTCGGACGTTCTGTTG 1056
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 CAAGAATAGAATT-CTTATATGGGTGACATGTTTCTTCCGGCAATTCGGACGTTCTGTTG 1226
Query 1057 ATCGTTCTGACTATCTTACTCTCCGCAAAGGATTCATTGTGAATCACCACCTCACATTAA 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 ATCGTTCTGACTATCTTACTCTCCGCAAAGGATTCATTGTGAATCACCACCTCACATTAA 1286
Query 1117 AGTACGATTTTCACAGCTACATGATTCGTTCTATGGAAGAAGAGTTCCAAAGGATCGTTG 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1287 AGTACGATTTTCACAGCTACATGATTCGTTCTATGGAAGAAGAGTTCCAAAGGATCGTTG 1346
Query 1177 GTGTGAGTGGGCCGCTTTGGGGATTCGTAGTTGCTTTCATGCTCTTTAATATAAAAGGGT 1236
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 1347 GTGTGAGTGGGCCGCTTTGGGGTTTCGTAGTTGCTTTCATGCTCTTTAACATAAAAGGAT 1406
Query 1237 CGAATCTTTATTTCTGGATAGCGATCATTCCTGTTACTCTTGTTCTTCTGGTTGGTGCTA 1296
| |||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 1407 CAAATCTTTACTTCTGGATAGCGATTATTCCTGTAACCCTTGTTCTTCTGGTTGGTGCTA 1466
Query 1297 AGTTGCAACACGTAATAGCAACTTTGGCATTGGAGAATGCCGGGTTAACCGAGTATCCTT 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1467 AGTTGCAACACGTAATAGCAACTTTGGCATTGGAGAATGCCGGGTTAACCGAGTATCCTT 1526
Query 1357 CCGGAGTGAAGCTGAGACCTCGGGATGAACTTTTCTGGTTCAATAAACCAGAACTACTCT 1416
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1527 CCGGAGTAAAGCTGAGACCTCGAGATGAACTTTTCTGGTTCAATAAACCAGAACTACTCT 1586
Query 1417 TGTCCCTTATTCATTTCATTCTGTTTCAGAATTCTTTTGAACTGGCTTCGTTCTTCTGGT 1476
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1587 TGTCCCTTATCCATTTCATTCTGTTTCAGAATTCTTTTGAACTGGCTTCGTTCTTCTGGT 1646
Query 1477 TCTGGTGGCAGTTTGGGTACAGCTCTTGCTTCCTTAAGAATCATTACCTTGTTTACTTCA 1536
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1647 TCTGGTGGCAGTTTGGGTACAGCTCTTGCTTCCTTAAGAACCATTACCTTGTTTACTTCA 1706
Query 1537 GACTTCTTTTAGGATTTGCTGGACAGTTTCTATGCAGCTACAGCACACTGCCACTTTATG 1596
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1707 GACTTCTTTTAGGGTTTGCTGGACAGTTTCTATGCAGCTACAGTACACTGCCACTATATG 1766
Query 1597 CACTAGTCACTCAGATGGGAACGAACTATAAAGCGGCTCTGATACCTCAGAGGATAAGAG 1656
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1767 CACTAGTCACTCAGATGGGAACGAACTATAAAGCGGCTCTTATACCTCAGAGAATAAGAG 1826
Query 1657 AGACGATTCGCGGTTGGGGAAAAGCAACCAGAAGGAAAAGAAGGCACGGGTTATATGGCG 1716
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1827 AGACGATTCGCGGTTGGGGTAAAGCAACGAGAAGGAAAAGAAGGCACGGGTTATATGGCG 1886
Query 1717 ATGATTCAACTGTTAGAACAGAAACAAGCACGATTGCATCTA-TTGAAGAATATGACCAT 1775
|||||||||| |||||||||||||||||||| |||||||| | ||||||||||||| |||
Sbjct 1887 ATGATTCAACAGTTAGAACAGAAACAAGCACAATTGCATC-ACTTGAAGAATATGATCAT 1945
Query 1776 CAAGTGCTTGATGTTACTGAAACTTCTTTCGaacaacaacagaaacaacaacaacaaGGT 1835
||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1946 CAAGTGCTTGACGTTACTGAAACTTCTTTCGAACAACAACGGAAACAACAAGAACAAGGT 2005
Query 1836 ACTACTGAGCTAGAGTTGCAACCAATCCAACCTCGTAGCGATTGTGTACCTAATGA-ATC 1894
||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||| | |
Sbjct 2006 ACTACTGAGCTTGAGTTGCAACCAATCCAACCTCGTAATGATTGTGTACCCAATGATA-C 2064
Query 1895 TTCAAGTAGAGTCGGAACACCTCTTCTTCGACCTTGGCTCTCCATTTCTTCACCAACAAC 1954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2065 TTCAAGTAGAGTCGGAACACCTCTTCTTCGACCTTGGCTCTCCATTTCTTCACCAACAAC 2124
Query 1955 GACCATAGAGTTGAGATCAGAACCTATGGAACCACTCTCGAGATCGTTTTCATTGCCAAG 2014
||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||
Sbjct 2125 GACCATAGAGTTGAGATCAGAACCTATGGAAACACTCTCGAGATCGTCTTCCTTGCCAAG 2184
Query 2015 TGAGAAGAGAGTCTGATAATATCTCTCTAATAAGTTCGTAGGAGTAAGTTCAGTAGCAAA 2074
|||||||||||||||| | ||| ||||||||||||||||||| |||||| |||
Sbjct 2185 TGAGAAGAGAGTCTGA-A-TATA-----AATAAGTTCGTAGGAGTAA---CAGTAGAAAA 2234
Query 2075 CAAGAATGTCTCGATGAACATAGAT 2099
|||| ||||||||||||||||||||
Sbjct 2235 CAAGTATGTCTCGATGAACATAGAT 2259
Score = 67.6 bits (36), Expect = 5e-10
Identities = 54/62 (87%), Gaps = 4/62 (6%)
Strand=Plus/Plus
Query 1 ACATGAAGTTATGAACTAAGTGAGACCACAATAACCTCTCT--A--GATTTCTACAGTGA 56
|||||||||||||||||||||||||||| || ||| ||| | | ||||||||||||||
Sbjct 57 ACATGAAGTTATGAACTAAGTGAGACCAGAAGAACTTCTTTCGATCGATTTCTACAGTGA 116
Query 57 TT 58
||
Sbjct 117 TT 118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106525556490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5