BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495454
Length=1781
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53770.1 | Symbols: | Nucleotidyltransferase family protein... 2595 0.0
> AT5G53770.1 | Symbols: | Nucleotidyltransferase family protein
| chr5:21826656-21829983 FORWARD LENGTH=1795
Length=1795
Score = 2595 bits (1405), Expect = 0.0
Identities = 1678/1803 (93%), Gaps = 45/1803 (2%)
Strand=Plus/Plus
Query 1 CCGACATAACTTTTAAGTTTTGTAGCTCCTCCCCGACGGCTTCGAAACCCTAAACCCCAA 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 CCGACATAACTTTTAAGTTTTGTAGCTCCTCCTCGACGGCTTCGAAACCCTAAACCCCAA 60
Query 61 AGTTTAAGCTGCCGTCAATGGAGGACTCCGATGCTAAAACGGAAGCTCCAGCTTTCGTAT 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 AGTTTAAGCTGCCGTCAATGGAGGACTCCGATGCTAAAACGGAAGCTCCTGCTTTCGTAT 120
Query 121 ACGATACTCTTCCTCCACTTTCTTTCTCAGATTCGAACCAATCT---CCACCAACTCATG 177
|||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||
Sbjct 121 ACGATACTCTTCCTCCACTTTCATTCTCAGATTCGAATCAATCTCCACCACCAACTCATG 180
Query 178 ACGAATCTCACCAATACTCTGTTTTCCGCAAAGAGATTTCAGA-TTTCACCGTCGATACC 236
| ||||| ||||||||||||||||||||||||||||||||||| |||| ||| ||| ||
Sbjct 181 AAGAATCACACCAATACTCTGTTTTCCGCAAAGAGATTTCAGATTTTC-CCGACGACACA 239
Query 237 ACGCCGGTGGAATCAGCTACGGTGGTTTTCTTCTCACTCGATGTTGATTGTGGGACGACT 296
||||||||||||||||||||||||| |||||||||||||||||| || ||| |||||||
Sbjct 240 ACGCCGGTGGAATCAGCTACGGTGGATTTCTTCTCACTCGATGTAGAAGGTGAGACGACT 299
Query 297 GAGAACGGCGTCGAACCTGTAACACCGGTGGTAGTGGCGTCGTCgaagaagaagagtaag 356
||||||||||||||||||||||| |||||||| || | | ||||||||||||||||||||
Sbjct 300 GAGAACGGCGTCGAACCTGTAACGCCGGTGGTTGT-G-G-CGTCGAAGAAGAAGAGTAAG 356
Query 357 aagaggaagaaagatgaagaaCCCAGATTGGAGAGTAATTGGTTTAGTGAGAATAGTTTC 416
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 357 AAGAGGAAGAAAGATGAAGAACCTAGATTGGAGAGTAATTGGTTTAGTGAGAATAGTTTC 416
Query 417 TCTAAGATCCCAATGCTTCAATTGCATAAAGAAATAGTAGATTTCTGTGATTTTCTGTTA 476
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TCTAAGATTCCAATGCTTCAATTGCATAAAGAAATAGTAGATTTCTGTGATTTTCTGTTA 476
Query 477 CCAACACAAGCAGAAAAAGCTGAGCGTGATGCAGCAGTGGAGAGTGTCTCGAGTGTTATT 536
||||||||||| || |||||||||||||||||||||||||||||||| || |||||||||
Sbjct 477 CCAACACAAGCCGAGAAAGCTGAGCGTGATGCAGCAGTGGAGAGTGTTTCAAGTGTTATT 536
Query 537 ACGTATATCTGGCCAAGTTGCAAGGTTGAGGTTTTTGGGTCATACAAGACAGGGCTTTAT 596
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AAGTATATCTGGCCGAGTTGCAAGGTTGAGGTTTTTGGGTCATACAAGACAGGGCTTTAT 596
Query 597 CTTCCAACAAGTGATATAGATGTGGTCATTCTGGAATCAGGTCTCACTAATCCTCAATTA 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 597 CTTCCAACAAGTGATATAGATGTGGTCATTCTGGAATCAGGTCTCACTAATCCTCAGTTA 656
Query 657 GGTCTACGCGCACTCTCCAGGGCATTATCACAAAGGGGAATTGCAAAAAATCTTGTGGTG 716
|||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||
Sbjct 657 GGTCTACGCGCACTCTCCAGGGCATTATCACAAAGGGGAATTGCGAAGAATCTTCTGGTG 716
Query 717 ATTGCTAAGGCTCGTGTACCAATTATCAAGTTTGTTGAGAAGAAAAGCAATATTGCGTTT 776
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 717 ATTGCTAAGGCTCGTGTACCAATTATCAAGTTTGTTGAGAAGAAAAGCAACATTGCGTTT 776
Query 777 GATCTAAGTTTTGATATGGAGAATGGGCCAAAGGCAGCTGAGTTTATTCAGGATGCAGTA 836
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 777 GATCTAAGTTTTGATATGGAGAATGGACCAAAGGCAGCTGAGTTTATACAGGATGCAGTA 836
Query 837 TCAAAGTTGCCTCCTCTACGACCATTATGTCTAATTCTGAAAGTATTTCTACAGCAGAGA 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TCAAAGTTGCCTCCTCTACGACCATTATGTCTAATTCTGAAAGTATTTCTACAGCAGAGA 896
Query 897 GAACTTAATGAGGTGTACAGTGGTGGAATTGGTTCATATGCACTTCTTGCAATGCTCATT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GAACTTAATGAGGTGTACAGTGGTGGAATTGGTTCATATGCACTTCTTGCAATGCTCATT 956
Query 957 GCATTTCTCAAGTACCTTAAGGATGGTCGAACCGCACCTGAGCATAACTTGGGAGTTCTA 1016
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 957 GCATTTCTCAAGTACCTGAAGGATGGTCGAAGCGCACCTGAGCATAACTTGGGAGTTCTA 1016
Query 1017 TTGGTTAAATTCTTTGATTTTTACGGGCGAAAATTAAACACCGCAGATGTCGGTGTATCT 1076
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1017 TTGGTTAAATTCTTTGATTTTTACGGGCGAAAATTAAACACCGCAGATGTCGGTATATCT 1076
Query 1077 TGCAAAACTGG-AGGCTCTTTCTTTTCAAAGTACGACAAAGGTTTCCTGAACAGAGCCCG 1135
||||||| ||| ||| ||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1077 TGCAAAA-TGGGAGGTTCTTTCTTTTCTAAGTACAACAAAGGTTTCCTGAACAGAGCCCG 1135
Query 1136 GCCAGGTCTCATCTCTATCGAGGATCCACAGACACCAGAGAATGACATTGGCAAGAGCTC 1195
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1136 GCCAAGTCTCATCTCTATCGAGGATCCACAGACACCAGAGAATGACATTGGGAAGAGCTC 1195
Query 1196 ATTCAACTACTTTCAGATTCGATCAGCCTTTGCAATGGCCTTGTCTACTCTAACAAACAC 1255
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1196 ATTCAACTACTTTCAGATTCGATCAGCCTTTGCAATGGCCTTGTCTACACTAACAAACAC 1255
Query 1256 AAAAGCGATCCTATCTTTAGGACCAAACAGAAGCATTCTCGGCACAATCATCAGACCAGA 1315
|||||| |||||||| |||||||||||| | ||||| |||||||| ||||||||||||||
Sbjct 1256 AAAAGCCATCCTATCGTTAGGACCAAACCGGAGCATCCTCGGCACTATCATCAGACCAGA 1315
Query 1316 CCGGATCCTATCAGAACGCAAAGGAGGGA-AAAACGGGGACGTCACTTTCAACAGCCTTC 1374
|||| |||||||||||||||||||||| | |||| || || ||||| |||||||||||||
Sbjct 1316 CCGGGTCCTATCAGAACGCAAAGGAGG-ACAAAATGGAGATGTCACGTTCAACAGCCTTC 1374
Query 1375 TTCCCGGAGCAGGAGAGCCATTACCAATGGCGAGCAACAGCAAAACCAACGGCGGTCTTT 1434
|||||||||||||||||||||||||| ||| ||| ||| ||||||||||||| || ||||
Sbjct 1375 TTCCCGGAGCAGGAGAGCCATTACCATTGGAGAGTAACGGCAAAACCAACGGTGGGCTTT 1434
Query 1435 TCTGCAACTGGGAGCTCGAAGAAGACGAAGAAG--GTTT-GTTCCCAAGAGGGAGTACTA 1491
||||||||||||||||||||||||| ||||||| | || |||||| ||||||| | |
Sbjct 1435 TCTGCAACTGGGAGCTCGAAGAAGAGGAAGAAGAAGGTTCGTTCCCTAGAGGGA--A-T- 1490
Query 1492 CAAACGGAGACATTACTCCGGTTGTAGATACTCCTGGTaagaaatcgaaagagtcttctc 1551
| | ||||||||| || || ||||| |||||||||||||| |||||||||||||
Sbjct 1491 -----G-A--CATTACTCCAGTAGTTGATACCCCTGGTAAGAAATCAAAAGAGTCTTCTC 1542
Query 1552 gaaagaagaagaagaagagca-gcaagaa---ggaggtagatgaagagga--ag-aagaa 1604
|||| |||||||||||||||| | ||||| ||||||||||||||| || || |||||
Sbjct 1543 GAAAAAAGAAGAAGAAGAGCAAG-AAGAATAAGGAGGTAGATGAAGACGACGAGGAAGAA 1601
Query 1605 ggagcgagttcgaagaagaagaagaa-A--CGACGGAGGAACATAGTTGGACTCACATGG 1661
||| ||||| |||||||||||||||| | |||||||||||||| |||||||||||||||
Sbjct 1602 GGAACGAGTACGAAGAAGAAGAAGAAGAAACGACGGAGGAACATTGTTGGACTCACATGG 1661
Query 1662 ACTTACTGAGAGATGGTTCTTTTTAAGTTTGGTTACACTTGGAACCAGaaaaaaaGTTTC 1721
|| |||||||||||| || || | | ||| |||||||||| |||||||| || |||||
Sbjct 1662 ACCTACTGAGAGATGTTTATTAT-A-GTTCGGTTACACTTAGAACCAGACGAA--GTTTC 1717
Query 1722 TGTTATGAGTGTAAATTAT-A-A-TTTGGTAATAACAGATATTTATGCTGTTGTAACAAA 1778
||||||||||||||||||| | | |||||||| ||||||||||||||||||||| |||||
Sbjct 1718 TGTTATGAGTGTAAATTATTATAATTTGGTAAAAACAGATATTTATGCTGTTGTTACAAA 1777
Query 1779 TTA 1781
|||
Sbjct 1778 TTA 1780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88101956475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5