BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg495458

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G53820.1 | Symbols:  | Late embryogenesis abundant protein (...   719    0.0  


> AT5G53820.1 | Symbols:  | Late embryogenesis abundant protein 
(LEA) family protein | chr5:21853397-21854117 FORWARD LENGTH=533
Length=533

 Score =  719 bits (389),  Expect = 0.0
 Identities = 416/429 (97%), Gaps = 1/429 (0%)
 Strand=Plus/Plus

Query  1    CACAACTCACAATTACAAAAGCTAAACAGTTCTTTAACAATCAAAGTAAGtttttttCAA  60
            ||||||||| ||||||||||||||||||||||| ||| ||||||||||| |||||| | |
Sbjct  5    CACAACTCATAATTACAAAAGCTAAACAGTTCTCTAA-AATCAAAGTAACTTTTTTCCGA  63

Query  61   AGAGAAGATTAGAAAATGTCTAACAACAGTCAGAGCATGAGCTTCAACGCTGGCCAAGCT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  64   AGAGAAGATTAGAAAATGTCTAACAACAGTCAGAGCATGAGCTTCAACGCTGGCCAAGCT  123

Query  121  AAAGGCCAAACCCAGGAGAAGGCAAGCAACTTGATGGACAAGGCCTCCAATGCTGCCCAA  180
            ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  124  AAAGGCCAAACTCAGGAGAAGGCAAGCAACTTGATAGACAAGGCCTCCAATGCTGCCCAA  183

Query  181  TCTGCTAAGGAATCTATCCAAGAGGGTGGACAGCAGCTGAAGCAGAAGGCACAAGGTGCG  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  184  TCTGCTAAGGAATCTATCCAAGAGGGTGGACAGCAGCTGAAGCAGAAGGCACAAGGTGCG  243

Query  241  AGTGAGACCATTAAGGAAAAGACCGGCATCAGCAAATGAGAAGCACGTTCTAATAATAAA  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  244  AGTGAGACCATTAAGGAAAAGACCGGCATCAGCAAATGAGAAGCACGTTCTAATAATAAT  303

Query  301  TTATGTTTTCTGTTTTCGTTTTTATTCTACCAGAATAATAATTAGATAGATATGTCTATC  360
            |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  304  TTATGTTTTCAGTTTTCGTTTTTATTCTACCAGAAAAATAATTAGATAGATATGTCTATC  363

Query  361  TAAATCCAAGACTATGGATTTCGATCGAAGCCATTTAGGCAATTACTTTTGCTTCTCTAT  420
            ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  364  TAAATCCAAGAATATGGATTTCGATCGAAGCCATTTAGGCAATTACTTTTGCTTTTCTAT  423

Query  421  Gtttttttt  429
            |||||||||
Sbjct  424  GTTTTTTTT  432


 Score =  102 bits (55),  Expect = 3e-21
 Identities = 67/72 (93%), Gaps = 3/72 (4%)
 Strand=Plus/Plus

Query  434  ACTCTTGTCTCTTAATAATTTGTAGCCATGCAGTTATTTCTATA-T-TT-AAATAAATGA  490
            |||||||||| || |||||||||||||||||||||||||||||| | || ||||||||||
Sbjct  462  ACTCTTGTCTATTGATAATTTGTAGCCATGCAGTTATTTCTATAATATTTAAATAAATGA  521

Query  491  CATGATTACATG  502
            ||||||||||||
Sbjct  522  CATGATTACATG  533



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23961688119


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5