BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495459
Length=883
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53830.1 | Symbols: | VQ motif-containing protein | chr5:21... 1362 0.0
> AT5G53830.1 | Symbols: | VQ motif-containing protein | chr5:21857050-21857984
FORWARD LENGTH=935
Length=935
Score = 1362 bits (737), Expect = 0.0
Identities = 838/885 (95%), Gaps = 14/885 (2%)
Strand=Plus/Plus
Query 1 CTCATTAATGGAAGTTTCAACATCATCCATGTCTTCAAAACCAGAACAAATGCAAAACCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCATTAATGGAAGTTTCAACATCATCCATGTCTTCAAAACCAGAACAAATGCAAAACCC 60
Query 61 AGCTCCTATGATGATCTCATCTCCTAGGTTTCAGCCTCAGATAAGATCTCCTCATCATCA 120
| |||| | |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 ACCTCC--T-ATGATCTCATCTCCTAGGTTTCAGCCTCAGATAATATCTCCTCATCATCA 117
Query 121 TGACCAGCATCAACATCTCTCAAATCCTTACCCAACAACATTTGTTCAAGCAGACACTTC 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 118 TGACCAGCATCAACATCTCTCAAATCCTTATCCAACAACATTTGTTCAAGCAGACACTTC 177
Query 181 TACTTTCAAACAAGTCGTCCAGATGCTCACCGGCTCCTCCACCGATAACACCACCGGAAA 240
|||||||||||||||||| |||||||| |||||||| |||||||||| ||||||||||||
Sbjct 178 TACTTTCAAACAAGTCGTTCAGATGCTTACCGGCTCATCCACCGATACCACCACCGGAAA 237
Query 241 ACACCATGAAGCTCCTTCTCCGGTGaacaacaacaacaacaaGGGGTCAAGTTTCTCGAT 300
|||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 238 ACACCACGAAGCTCCTTCTCCGGTG---AACAACAACAACAAGGGATCAAGTTTCTCGAT 294
Query 301 TCCACCCATCAAGAAAACCAACAGCTTCAAGCTTTACGAGAGAAGacaaaacaacaacaa 360
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 295 TCCACCCATCAAGAAAACCAACAGCTTCAAGCTTTACGAGAGAAG-----ACAA-AACAA 348
Query 361 caacaacaTGTTCGCTAAGAATGACCTAATGATCAATACGTTAAGGCTTCAAAACTCTCA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 CAACAACATGTTCGCTAAGAATGACCTAATGATCAATACGTTAAGGCTTCAAAACTCTCA 408
Query 421 GAGATTGATGTTCACAGGAGGAAATAGTAGTCATCATCAAAGCCCGAGATTCTCCCCGAG 480
|||||||||||||||||||||||| || |||||||||||||||||||||||||| || ||
Sbjct 409 GAGATTGATGTTCACAGGAGGAAACAGCAGTCATCATCAAAGCCCGAGATTCTCTCCAAG 468
Query 481 AAACAGTTCATCATCAGAAAATATTCTTCTGTCTCCAAGCATGCTGGATTTTCCGAAGCT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 AAACAGTTCATCATCAGAAAATATTCTTCTGTCTCCAAGCATGCTGGATTTTCCGAAGCT 528
Query 541 AGGGCTAAACAGTCCCGTGACGCCACTGAGAAGCAACGATGACCCCTTCAACAAGTCATC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 AGGGCTAAACAGTCCCGTGACGCCACTGAGAAGCAACGATGACCCCTTCAACAAGTCATC 588
Query 601 GCCTTTATCATTAGGGAACTCATCTGAAGAAGACAAAGCAATTGCTGAGAAAGGCTTTTA 660
||||| ||||||||||||||||| |||||||||||||| |||||||| || ||||||||
Sbjct 589 ACCTTTGTCATTAGGGAACTCATCGGAAGAAGACAAAGCCATTGCTGATAAGGGCTTTTA 648
Query 661 TCTTCATCCTTCTCCAGTCTCAACCCCTAGAGACTCTCAGCCACTGCTTCTTCCGCTTTT 720
||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 649 TCTTCATCCATCTCCAGTCTCAACTCCTAGAGACTCTCAGCCACTGCTTCTTCCTCTTTT 708
Query 721 TCCGATTACTTCTCCGGCGAGCAACCCTTGATCCCGACGAT--CCTTGAGTGATTATATA 778
|||| || ||||||||||||| ||| ||| ||||||||||| || ||||||||| ||||
Sbjct 709 TCCGGTTGCTTCTCCGGCGAGGAACTCTTAATCCCGACGATATCCATGAGTGATTTTATA 768
Query 779 CATGATATTAAATTATATCTGTTTCCGGATTTTGTTTAGCTATAACTAAGATATCTATAA 838
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 769 CATGATATTAAATTATATCTATCTCCGGATTTTGTTTAGCTATAACTAAGATATCTATAA 828
Query 839 TTTTGATCTTAGTTATGGAGTGACTGTAAATTTTGTGCGGTTTTT 883
||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 829 GTTTGATCATAGTTATGGAGTGACTGTAAATTTTGTGCGGTTTTT 873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43100898126
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5