BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495460
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53840.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 894 0.0
> AT5G53840.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:21859148-21860672 REVERSE LENGTH=1335
Length=1335
Score = 894 bits (484), Expect = 0.0
Identities = 738/856 (86%), Gaps = 35/856 (4%)
Strand=Plus/Plus
Query 2 TAAGCCAATTACCTGATCATTTGATCTGTCAGATTCTTTCTCATCTTCCCACAAAGGAAG 61
||||||||||||||||||||||||| ||| ||||| ||||||||| | || ||||| |
Sbjct 59 TAAGCCAATTACCTGATCATTTGATATGTGTCATTCTGTCTCATCTTTCTACCAAGGATG 118
Query 62 CTGTAAGAACAAGTATCTTATCCACAAGATGGAGAAATCTTTGGCAATTGGTTCCTGTAT 121
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CTGTAAGAACAAGCATCTTATCCACAAGATGGAGAAATCTTTGGCAATTGGTTCCTGTAT 178
Query 122 TGGATTTAAACGGCCGCGAGTT-C---CG----GTTA-TTTGTGAGTTTCGTTGGCAGGT 172
||||||| || ||| ||||| | || || | ||||||||||| | |||||| |
Sbjct 179 TGGATTTCGACTCCCGAGAGTTACGGTCGTTCAGTGAGTTTGTGAGTTTTGCTGGCAGTT 238
Query 173 TTTTTGACATCCACAAAGACTCATGTATACAAAAACTATGTTTACGTA-TTAGTGATCAA 231
||||| | | ||||||||||||| |||||| |||||| || || ||| ||| |||||
Sbjct 239 TTTTTTATTTACACAAAGACTCATATATACAGAAACTACGTGTATGTATTTA-TGATCTT 297
Query 232 GCTGGTAAGTCGTATCTCACCTCATGGATAGATCTTGTGGCTAGGCGTAGGATTCAGCAT 291
|||||||| | ||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 298 GCTGGTAACTATTATCTCACCTCATGGATAGATCTTGTGACTAGGCATAGGATTCAGCAT 357
Query 292 ATCGATCTTAGTCATGTTTTTTACC-GTCCTGAATTCGGTGACATACCCCTGAGCTTGTA 350
|| ||| |||| || |||||||| || ||| ||||||| |||||| || ||||||||
Sbjct 358 ATTGATATTAG---TG-TTTTTACCTGTTCTGGCTTCGGTGTCATACCACTAAGCTTGTA 413
Query 351 TACTTGTGATACACTGGTACACTTACGACTCTCTCTACTCACCATGGTTAATGTCGAGTT 410
||||||||||||||| ||||||||| |||||||| | ||||||||||||| ||||||||
Sbjct 414 TACTTGTGATACACTCGTACACTTAAAACTCTCTCGAGTCACCATGGTTAACGTCGAGTT 473
Query 411 TGTTTCCTTACCTTGCCTGAAGATCCTGCATTTAGAGTTTGTTAAATATACCAACGAGAC 470
||||||||| |||||||||||||| ||| | ||||| |||||||| | |||||| |||||
Sbjct 474 TGTTTCCTTGCCTTGCCTGAAGATTCTGGACTTAGATTTTGTTAATTTTACCAATGAGAC 533
Query 471 CACGTTGGATAAACTGATCTCATGCTCTCCAGTTTTAGAAGATTTAACCATTG-CAAAAT 529
||||||||||||| | ||||||||||| |||||| ||||||| |||||||||| | ||||
Sbjct 534 CACGTTGGATAAAATTATCTCATGCTCCCCAGTTCTAGAAGAGTTAACCATTGTC-AAAT 592
Query 530 ATTCTGAAGATAATGCAAATG-TTCTACAAGTACGCTCTCAGACACTAAAGAGAGTCGAC 588
|||||||||||||| ||| | || ||||||||||||||||||||||||||||||||||
Sbjct 593 CTTCTGAAGATAATGTAAA-GATTATACAAGTACGCTCTCAGACACTAAAGAGAGTCGAA 651
Query 589 ATACATGGGTGGTTTGATCGACATACTAGACTTGTTATCGATACTCCTCTACTCCAGTTT 648
|||||| || ||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 652 ATACATCGGCGGTTTGATCGACATAATGGACTTGTTATCGATACTCCTCTACTCCAGTTT 711
Query 649 TTGA-TGATTCAAA-CTCACTCAATAAAGAACATTGATTTCATCAATCTAGGTTTCACTG 706
|||| | ||| ||| ||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 712 TTGAGT-ATT-AAAGCTCACTCAATAAAGAGCATTGAATTCATCAATCTAGGTTTCACTA 769
Query 707 CCAAGGTAGATATGGACG-CTAACTGGCTCACTACTTTGGATCCAAACGACTTATCCAAC 765
||||||||||||| |||| | |||| ||| | | |||||||||||||||||||
Sbjct 770 CCAAGGTAGATATTGACGTC-AACTTGCT---T-----G-ATCCAAACGACTTATCCAAT 819
Query 766 AGAAGCATGATGCGCGATTTCTTCACCAGTATTTCAAGGGTCAAGTCTCTAGTCATTAGT 825
|||||||||| ||| ||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 820 AGAAGCATGACGCGTGATTTCTTCACCACTATTTCAAGGGTCAGGTCTCTAGTCATTAGA 879
Query 826 TATGCTACTATCAAGG 841
||| |||||||||||
Sbjct 880 CATGGTACTATCAAGG 895
Score = 470 bits (254), Expect = 2e-131
Identities = 328/361 (91%), Gaps = 15/361 (4%)
Strand=Plus/Plus
Query 849 TGCTGTTTGTTCTATTTCTAATCTGGAAATGTTGCTAAATCTTCTTGAGAGCTGCCCGAA 908
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 957 TGCTGTTTGTTCTATTTCTAATCTGGAAATGCTGCTAAATCTTCTTAAGAGCTGCCCGAA 1016
Query 909 ACTAGAATCTCTCAGCTTGAAATTGTTTAACTATAAAAAGAAGAAAAAAGCAGAGGTGAT 968
||||||||||||||||||||||||| || ||||| ||||||| ||||||| |||||||||
Sbjct 1017 ACTAGAATCTCTCAGCTTGAAATTGGTTGACTATGAAAAGAATAAAAAAGAAGAGGTGAT 1076
Query 969 GTCTTCGACAGT---GCCACCGTGTTTGGTATCGTCGCTTAAGTTTGTTAAATTGGAAAG 1025
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1077 GTCTTCGACAGTACCACCACCGTGTTTGGTATCGTCGCTCAAGTTTGTTAAATTGGAAAG 1136
Query 1026 TCATGAGCTCTTTGGATGTGGAACAGAATTGAAAGTAGCAAGGTACTTCCTCGAGAATTC 1085
|| ||||||| ||||||||||||||| |||||||||| ||||||||| | ||||||||
Sbjct 1137 TC---AGCTCTTGGGATGTGGAACAGAACTGAAAGTAGCTAGGTACTTCTTGGAGAATTC 1193
Query 1086 AACAATTCTGGAGAAATTGACTCTAAGGAATGATTAT-TG-----GGAGGA---AAATGT 1136
|||||||||||||||||||||||||| || ||||||| || ||| || ||||||
Sbjct 1194 AACAATTCTGGAGAAATTGACTCTAAAGATTGATTATATGTATAAGGATGAGGCAAATGT 1253
Query 1137 AAACCACATTCGCCAGACACTCCATGCAATACCAAGATGCTCTAGTACTTGTGAAGTTGT 1196
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1254 AAACCACATTCGCCAGACACTCCATGCAGTACCAAGATGCTCTAGTACTTGTGAAGTTGT 1313
Query 1197 T 1197
|
Sbjct 1314 T 1314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59236643100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5