BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495467
Length=3388
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53890.1 | Symbols: PSKR2, AtPSKR2 | phytosylfokine-alpha re... 5094 0.0
> AT5G53890.1 | Symbols: PSKR2, AtPSKR2 | phytosylfokine-alpha
receptor 2 | chr5:21876861-21880461 FORWARD LENGTH=3438
Length=3438
Score = 5094 bits (2758), Expect = 0.0
Identities = 3189/3399 (94%), Gaps = 22/3399 (1%)
Strand=Plus/Plus
Query 1 GAAGATACGTGTTGCTGATTTCAATTTGCTTGCACAATGTTGCTTCAACTACAAGTTGTG 60
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 44 GAAGATACGTGTTGCTGATTTCAATTTGCTTCCACAATGTTGCTTCAACTACAAGTTGTT 103
Query 61 AAAGCTTGATTC-TTTTGGGACATGAGCATGTGACTTATGAAAGTTTTAGTCTTT-TGCT 118
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 104 AAAGCTTGATTCTTTTTGGGACATGAGCATGTGACTTATGAAAGTTTTAGTCTTTAT-TT 162
Query 119 GTGATTTGAGCTGGCTAGAGAAGACTCTTGTCTCTGTTTG-TTGTTAGTCATGGTGATCA 177
|||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct 163 GTGATTTGAGCTGGCTAGAGAAGACTCTTGTCTCTGTTTGATAG-TAGTCATGGTGATCA 221
Query 178 TTCTCCTATTGGCCTTCTTTGTTGGTTCATCTGTGAGCCTGA-CATGTCATCCCAGCGAC 236
|||||||||||| ||||||||||||||| |||||||||| | |||||||||||| ||||
Sbjct 222 TTCTCCTATTGGTCTTCTTTGTTGGTTCTTCTGTGAGCC-AACCATGTCATCCCAACGAC 280
Query 237 TTATCTGCACTCCGGGAATTCGCAGGAGCGTTGAAGAACAAGTCTGTTACGGAATCTTGG 296
|||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 281 TTATCTGCGCTCCGGGAATTGGCAGGAGCGTTGAAGAACAAGTCTGTTACAGAATCTTGG 340
Query 297 TTAAACGGTTCGCGTTGTTGTGAATGGGATGGTGTGTTTTGTGAAGGGGGTGATGTTTCT 356
||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 341 TTAAATGGTTCACGTTGTTGTGAATGGGATGGTGTGTTTTGTGAAGGGAGTGATGTTTCT 400
Query 357 GGTCGAGTTACAAAGTTGGTTCTT-TCTGGTAAGGGTTTGGAAGGTGTGATTTCGGGGTC 415
||||||||||||||||||||| || ||| || ||||||||||||||||||||| |||
Sbjct 401 GGTCGAGTTACAAAGTTGGTT-TTACCTGAAAAAGGTTTGGAAGGTGTGATTTCGAAGTC 459
Query 416 TTTAGGCGAGTTGAGTGAGCTGCGAGTACTTGATCTATCTCGTAACCAGCTTAAAGGCGA 475
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 TTTAGGGGAGTTGACTGAGCTGCGAGTACTTGATCTATCTCGTAACCAGCTTAAAGGCGA 519
Query 476 CTTACCAGCGGAGATTTCCAAGTTAGAGCAGCTTGAAGTTCTTGATTTGAGCCATAATCT 535
|||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| ||
Sbjct 520 AGTACCAGCGGAGATTTCTAAGTTAGAGCAGCTTCAAGTTCTTGATTTGAGTCATAACCT 579
Query 536 GTTGTCAGGGTCGGTTTTGGGAGTGGTTTCTGGTTTAAAGCTGATTCAGTCGCTGAACAT 595
||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 580 GTTATCAGGGTCTGTTTTGGGAGTGGTTTCGGGTTTAAAGCTGATTCAGTCGCTGAACAT 639
Query 596 TTCCAGCAATTCGCTAAGCGGGAATTTATCGGATGTTGGAATGTTTCCTGGTCTTGTGAT 655
||| ||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 640 TTCGAGCAATTCGCTTAGCGGGAAGTTATCGGATGTTGGAGTGTTTCCTGGTCTTGTGAT 699
Query 656 GTTTAATGTAAGCAACAATTTGTTCGAGGGTGAGATTCATCCTGAACTCTGCAGCTCATC 715
| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 700 GCTTAATGTAAGCAACAATTTGTTTGAGGGTGAGATTCATCCTGAACTCTGTAGCTCATC 759
Query 716 TGGTGAGATTCAGGTTCTTGATTTATCGATGAATCGTTTGGTGGGGAATCTTGTTGGCTT 775
||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 760 TGGTGGGATACAGGTTCTTGATTTATCGATGAATCGTTTGGTGGGGAATCTTGATGGCTT 819
Query 776 GTATAATTGCAGCAAGTCTATTCAGCGGCTCCATGTCGACAGCAACGGATTGACTGGCCA 835
||| || |||||||| |||||||| | ||||||| ||||||||||| ||||||| |||||
Sbjct 820 GTACAACTGCAGCAAATCTATTCAACAGCTCCATATCGACAGCAACAGATTGACGGGCCA 879
Query 836 GCTTCCGGATTATCTTTATTCGATCCGGGACTTGGAGCAACTATCAGTCTCTGGGAACTA 895
||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||
Sbjct 880 ACTTCCGGATTATCTTTATTCGATCCGGGAGTTGGAGCAACTATCACTCTCTGGAAACTA 939
Query 896 CTTATCTGGACAGTTGAGCCAGAACTTGAGCAATCTCTCTGGTCTTAAGTCTCTGTTGAT 955
|||||| ||| |||| ||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 940 CTTATCCGGAGAGTTAAGCAAGAACTTGAGCAATCTCTCTGGTCTGAAGTCTCTGTTGAT 999
Query 956 TTCCGAGAACCGGTTTTCTGG-TGTAATTCCAGATGTTTTTGGTAATCTCACTCAGCTGG 1014
|| |||||||||||||| || |||||||||||||||||||||||| |||||||| |||
Sbjct 1000 ATCAGAGAACCGGTTTTC-GGATGTAATTCCAGATGTTTTTGGTAACCTCACTCAATTGG 1058
Query 1015 AACACCTCGACGTAAGCTCCAACAAGTTCTCGGGAAGATTTCCGCCAAGCTTATCTCAAT 1074
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 1059 AACACCTCGACGTGAGCTCCAACAAGTTCTCGGGAAGGTTTCCGCCAAGTTTATCCCAAT 1118
Query 1075 GCTCGAAGCTGCGGGTTCTTGATCTTAGGAACAACTCGTTATCTGGTTCTATCAATCTTA 1134
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1119 GCTCGAAGCTGCGGGTTCTTGATCTTAGGAACAACTCGTTATCCGGTTCTATCAATCTTA 1178
Query 1135 ACTTCACTGGATTTACTGATCTTTGCGTGCTCGATCTCGCCAGTAATCATTTCTCTGGAC 1194
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1179 ACTTCACTGGATTTACCGATCTTTGCGTGCTTGATCTCGCCAGTAATCATTTCTCTGGAC 1238
Query 1195 CACTTCCTGATTCCCTTGGCCATTGTCCCAAGATGAAGATCTTGAGTTTGGCGAAAAACG 1254
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1239 CTCTTCCTGATTCCCTTGGCCACTGTCCCAAGATGAAGATCTTGAGTTTGGCGAAAAACG 1298
Query 1255 AG-TTCAGCGGCAAAATCCCCGACACCTTCAAGAATCTGGACTCTCTCTTGTTCCTGTCT 1313
|| ||| ||||||||||||| |||||||||||||||||| | |||||||||||||||||
Sbjct 1299 AGTTTC-GCGGCAAAATCCCTGACACCTTCAAGAATCTGCAGTCTCTCTTGTTCCTGTCC 1357
Query 1314 TTATCCAACAACAGCTTTGTGGATTTTTCTGAGACAATGAATGTGCTGCAACATTGCAGA 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 TTATCCAACAACAGCTTTGTGGATTTTTCTGAGACAATGAATGTGCTGCAACATTGCAGA 1417
Query 1374 AATCTCTCCACTCTTATCCTCTCAAAGAATTTCATCGGCGAGGAAATACCAAGGAACGTC 1433
|| |||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1418 AACCTCTCCACTCTTATTCTCTCAAAGAACTTCATCGGCGAGGAAATACCAAACAACGTC 1477
Query 1434 ACTGGTTTCAACAACCTCGCGATTTTAGCCCTCGGAAACTGCGGTCTTAGAGGTCAGATT 1493
||||||||| ||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 1478 ACTGGTTTCGACAACCTCGCGATTTTAGCGCTAGGAAATTGCGGTCTTAGAGGTCAGATT 1537
Query 1494 CCGAGCTGGTTATTGAATTGCAAGAAGCTGGAAGTTCTTGATCTCTCTTGGAATCACATT 1553
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1538 CCGAGCTGGCTATTGAACTGCAAGAAGCTGGAAGTTCTTGATCTCTCTTGGAATCACTTT 1597
Query 1554 TACGGAACTATCCCTCATTGGATCGGTAAGATGGAGAGTCTGTTCTACATAGACTTCTCA 1613
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1598 TACGGAACTATCCCTCATTGGATTGGTAAGATGGAGAGTTTGTTCTACATAGACTTCTCA 1657
Query 1614 AACAACACTTTAACCGGAGAAATCCCGGTAGCCATAACCGAGCTCAAGAACTTAATCCAT 1673
||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||| |
Sbjct 1658 AACAACACTTTGACCGGAGCAATCCCGGTAGCCATAACCGAGCTCAAGAACCTAATCCGT 1717
Query 1674 TTAAACTGCACCGCTTCTCAGATGACC-ACCTCTTCTGGTATTCCTCTCTACGTAAAGCG 1732
||||| | |||||||||||||||||| | ||||||||| ||||||||||||||||||||
Sbjct 1718 CTAAACGGAACCGCTTCTCAGATGACCGA-CTCTTCTGGAATTCCTCTCTACGTAAAGCG 1776
Query 1733 GAACAAGAGCTCGAGTGGTCTTCCATATAACCAAGTTTCAAGATTCCCGCCATCTATCTA 1792
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 GAACAAGAGCTCCAACGGTCTTCCATATAACCAAGTTTCAAGATTCCCGCCATCTATCTA 1836
Query 1793 TTTGAACAATAACCGCCTCAACGGGACGATCTTGCCGGAGATCGGACGTTTGAAAGAGCT 1852
|||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1837 TTTGAATAATAACCGTCTCAACGGGACGATCTTGCCAGAGATAGGACGTTTGAAAGAGCT 1896
Query 1853 TCACATGCTGGATTTGAGCAGGAACAACTTCTCCGGGACGATACCTGATTCCATTTCAGG 1912
|||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1897 TCACATGCTGGACTTGAGCAGGAACAACTTCACTGGGACGATACCTGATTCCATTTCAGG 1956
Query 1913 GCTTGACAATTTGGAGGTTCTTGATTTGTCTTACAATCATCTCTACGGTTCGATTCCTCT 1972
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1957 GCTTGACAATTTGGAGGTTCTTGATTTATCTTACAATCATCTCTACGGTTCGATTCCTCT 2016
Query 1973 GTCTTTTCAGAGTCTCACTTTCTTGTCGAAGTTCAGTGTTGCATATAATCGTCTCACTGG 2032
||||||||||||||||||||||||||||| |||||| || || ||||| |||||||||||
Sbjct 2017 GTCTTTTCAGAGTCTCACTTTCTTGTCGAGGTTCAGCGTAGCGTATAACCGTCTCACTGG 2076
Query 2033 TGCGATTCCATCTGGAGGCCAGTTCTACAGCTTCCCACACTCCAGCTTTGAAGGAAATTT 2092
||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||| ||
Sbjct 2077 CGCGATTCCATCTGGAGGTCAGTTCTACAGCTTCCCGCACTCAAGCTTCGAAGGAAACTT 2136
Query 2093 GGGGCTTTGTCGCGCGATTGATTCTCCTTGCGATGTTCTGATGAGTAACATGTTGAATCC 2152
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2137 AGGACTTTGTCGCGCGATTGATTCTCCTTGCGATGTTCTGATGAGTAACATGTTGAATCC 2196
Query 2153 GAAAGGTCCTTCGCGTAGTAATAACAATGGCGG-AAGATTCGGGAGAAGCAGCATTGTTG 2211
||||||| |||||||||| |||||||||||||| ||| ||||||||||||||||||||||
Sbjct 2197 GAAAGGTTCTTCGCGTAGGAATAACAATGGCGGAAAG-TTCGGGAGAAGCAGCATTGTTG 2255
Query 2212 TACTTACCATAAGTCTAGCCATTGGGATTACTCTACTACTTTCTGTTATTCTGTTAAGAA 2271
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 2256 TACTTACCATAAGTCTAGCCATTGGGATTACTCTACTTCTTTCTGTTATTCTGTTAAGGA 2315
Query 2272 TTTCAAGAAAAGACT-CGGATGATCGAATTAATGACGTTGATGAGGAAACTATCAGCGGT 2330
||||||||||||| | |||||||||||| ||||||||||||||||| |||||||||||
Sbjct 2316 TTTCAAGAAAAGA-TGTGGATGATCGAATCAATGACGTTGATGAGGAGACTATCAGCGGG 2374
Query 2331 GTTCCGAAAGCTCTCGGGCCATCAAAGATTGTGCTTTTCCATAGCTGTGGATGCAAAGAT 2390
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2375 GTTTCGAAAGCTCTCGGGCCATCAAAGATTGTGCTTTTCCATAGCTGTGGATGTAAAGAT 2434
Query 2391 CTGAGTGTTGAGGAGTTGTTGAAATCTACAAACAATTTCAGCCAGGCAAACATTATAGGA 2450
|| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 2435 CTAAGTGTTGAGGAGTTGTTGAAGTCTACGAACAATTTCAGCCAGGCTAACATTATAGGA 2494
Query 2451 TGTGGTGGATTTGGTCTTGTGTACAAAGCAAATTTTCCCGATGGCTCAAAAGCAGCGGTC 2510
||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 2495 TGTGGCGGATTTGGTCTTGTGTACAAAGCTAATTTTCCCGATGGCTCGAAAGCAGCAGTC 2554
Query 2511 AAGAGGCTTTCTGGTGACTGTGGGCAGATGGAACGTGAATTCCAAGCGGAAGTTGAAGCA 2570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2555 AAGAGGCTTTCTGGTGACTGTGGGCAGATGGAACGTGAATTCCAAGCGGAAGTTGAAGCA 2614
Query 2571 TTGTCGCGAGCGGAACACAAGAATCTAGTCTCTCTTCAAGGCTACTGCAAGCATGGAAAC 2630
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2615 TTGTCTCGAGCGGAACATAAGAATCTAGTCTCTCTTCAAGGCTACTGCAAGCATGGAAAC 2674
Query 2631 GATCGGCTGCTTATCTACTCGTTCATGGAAAACGGAAGCTTGGACTATTGGCTACACGAG 2690
||| |||||||||| |||||||| ||||| || ||||| ||||| |||||||| || |||
Sbjct 2675 GATAGGCTGCTTATTTACTCGTTTATGGAGAATGGAAGTTTGGATTATTGGCTGCATGAG 2734
Query 2691 CGGGTTGACGGGAATATGACTCTCAAATGGGATGTGAGATTGAAGATAGCACAAGGCGCG 2750
||||| || |||||||||||||| | |||||||||||||||||||||||| ||||||||
Sbjct 2735 CGGGTAGATGGGAATATGACTCTTATATGGGATGTGAGATTGAAGATAGCTCAAGGCGCA 2794
Query 2751 GCGCGCGGGCTTGCTTACTTGCATAAAGTCTGTGAACCAAATGTTATCCATAGGGATGTG 2810
||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 2795 GCGCGAGGGCTTGCTTACTTGCATAAAGTCTGTGAACCTAATGTTATACATAGGGATGTG 2854
Query 2811 AAGTCGAGTAACATTTTGTTAGATGAGAAGTTTGAAGCTCATCTTGCGGATTTCGGGTTA 2870
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2855 AAGTCTAGTAACATTTTGTTAGATGAGAAGTTTGAAGCTCATCTTGCGGATTTTGGGTTA 2914
Query 2871 GCGAGGTTGCTTAGGCCGTACGATACTCACGTGACGACTGATTTGGTGGGGACATTGGGT 2930
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 2915 GCGAGGTTGCTTAGGCCGTATGATACTCACGTGACGACTGATTTGGTTGGGACATTGGGT 2974
Query 2931 TATATTCCTCCTGAATATAGCCAGTCTCTGATTGCAACATGTAGAGGAGATGTTTACAGT 2990
|||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 2975 TATATTCCTCCTGAGTATAGCCAGTCTTTGATTGCAACATGTAGAGGAGACGTTTACAGT 3034
Query 2991 TTTGGCGTTGTGCTTTTGGAGCTAGTTACAGGTCGTAGACCTGTGGAAGTCTGTAAAGGG 3050
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 3035 TTTGGCGTTGTGCTTTTGGAGCTAGTTACGGGTCGTAGACCTGTAGAAGTCTGTAAAGGG 3094
Query 3051 AAAAGTTGCAGAGATTTGGTGTCTCGGGTGTTTCAAATGAAGGCCGAGAAGCGCGAGGCT 3110
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 3095 AAAAGTTGCAGAGATTTGGTGTCTCGGGTGTTTCAAATGAAGGCTGAGAAGCGTGAAGCT 3154
Query 3111 GAGCTTATCGATACAACAATACGCGAAAACGTCAACGAGAAAACGGTTTTAGAGATGTTG 3170
||||||||||||||||||||||||||||| || ||||||| ||||||||| |||||||||
Sbjct 3155 GAGCTTATCGATACAACAATACGCGAAAATGTGAACGAGAGAACGGTTTTGGAGATGTTG 3214
Query 3171 GAGATTGCTTGCAAATGCATTGATCATGAGCCTAGAAGGAGACCGTTGATCGAGGAAGTC 3230
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 3215 GAGATTGCTTGCAAATGCATTGATCATGAGCCTAGAAGGAGACCACTGATCGAAGAAGTC 3274
Query 3231 GTTACTTGGCTTGAAGATCTTCCCATGGAGTCTGTTCAACAACAATGAAAA-CTCTTTTA 3289
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| | ||
Sbjct 3275 GTTACTTGGCTTGAAGATCTTCCTATGGAGTCTGTTCAACAACAATGAAAAACTCCTCTA 3334
Query 3290 TAAGAAGCTTTCTTAGTTTCTTTGTTAATGAAGTGAGTGTAGATCACTAGTTTTAATCTA 3349
|||| ||||||||||||||||| || |||||| |||||||||||||| |||||||||||
Sbjct 3335 TAAGTAGCTTTCTTAGTTTCTT-GTGAATGAAA-GAGTGTAGATCACTGGTTTTAATCTA 3392
Query 3350 AGAAACTTGTGGTATACATGTAAAGCAATGAACTTTTTT 3388
||||||||| |||||||||||||||||| ||||||||||
Sbjct 3393 AGAAACTTGGGGTATACATGTAAAGCAAAGAACTTTTTT 3431
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 168611095423
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5