BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495472
Length=1287
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53920.1 | Symbols: | ribosomal protein L11 methyltransfera... 1847 0.0
> AT5G53920.1 | Symbols: | ribosomal protein L11 methyltransferase-related
| chr5:21892124-21894267 FORWARD LENGTH=1296
Length=1296
Score = 1847 bits (1000), Expect = 0.0
Identities = 1205/1302 (93%), Gaps = 21/1302 (2%)
Strand=Plus/Plus
Query 1 ATGTTAGCTTGGAATTTCATCAAACACTTTCCGTGCAAGAATCTCTCCCGCCATATCCTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTAGCTTGGAATTTCATCAAACACTTTCCGTGCAAGAATCTCTCCCGCCATATCCTC 60
Query 61 AGAG--A-CAGAGTCAGACCTCTCTGCCTCTTCACTTTTTCTACTCCTCCATCCTCCTTT 117
|||| | ||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 61 AGAGACAGCAGAGTCAGACCTCTCTGCTTCTTCACTTCTTCTACTCCTCCATCCTCCTTT 120
Query 118 TCAAT-TACTGC--CTCTCTCT-CCTATTCTTCTT-CT--TCATCATCTTCGTGCTTCAC 170
||||| | ||| |||||||| | | |||||||| || || |||||||||||||||||
Sbjct 121 TCAATCT-TTGCGTCTCTCTCTACTTCTTCTTCTTCCTCCTCCTCATCTTCGTGCTTCAC 179
Query 171 TGATGAGTCTTTCACTGCACCTTATCTCTCAGTTCGTATACACTGTCCAAAACATGTCCT 230
||||||||||||| |||||||||| |||||||||||||| |||||||||||||||| |||
Sbjct 180 TGATGAGTCTTTCGCTGCACCTTACCTCTCAGTTCGTATCCACTGTCCAAAACATGCCCT 239
Query 231 CGATCCATTCTCGGAGGCGCTCTTGTGTTTTGGAGCAAGCTCTGTAACTGTAGATGAAGA 290
|||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||
Sbjct 240 CGATCCATTCTCGGAGGCACTTTTGTGTTTTGGAGCAAGCTCTGTAGCTGTAGATGAAGC 299
Query 291 CATCGACGAAGATGCG-GC-TTCTGGGTCTTCTCTTGCTTCCAAAGAGATATGTATAGAA 348
|||||| |||| || | || | ||||||||||||| ||||||||||||||||||
Sbjct 300 CATCGAAGAAG--CCGACCAAGATGAGACTTCTCTTGCTTCAAAAGAGATATGTATAGAA 357
Query 349 TCAATATTTCCAGTGCATGAAGAGGTGAAAATGTGCATTTCACAGGCTGCAAATTCCATA 408
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 358 TCAATATTTCCAGTGCATGAAGAGGTGAAAATGTGCATTTCACAAGCTGCAAATTCCATA 417
Query 409 GGCTTGAAAGAGATACCCAAATTCAAAGTTGAAATAGGAGATGAACAAGACTGGATTACC 468
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 418 GGCTTGAAAGAGATACCCAAATTCAAAGTTGAAATGGGAGATGAACTTGACTGGATTACC 477
Query 469 AAAAACCAGGAATTGTTTCAGCCTGTTGAAATTGCCGAGATG-CTTTGGATTGTACCTGA 527
||||||||||| |||||||||||||||||||| ||||||| | |||||||||||||||||
Sbjct 478 AAAAACCAGGATTTGTTTCAGCCTGTTGAAATCGCCGAGA-GACTTTGGATTGTACCTGA 536
Query 528 GTGGACATCTCCTCCTGTCACTGAAGCGGTAAACATAATTCTGAACCCTGGATTTGCGTT 587
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GTGGACATCTCCTCCTGTCGCTGAAGCGGTAAACATAATTCTGAACCCTGGATTTGCGTT 596
Query 588 TGGGACTGGAGAACATCCTACTACTAAGCTGTGTCTATTGCTTCTACAAAGTTTGATAAA 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TGGGACTGGAGAACATCCTACTACTAAGCTGTGTCTATTGCTTCTACAAAGTTTGATAAA 656
Query 648 AGGCGGGGAAGCATTCCTCGACTATGGTACTGGTTCAGGAATACTTGCAATCGCAGCCCT 707
|||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 657 AGGCGGAGAAGCTTTCCTCGACTATGGTACCGGTTCAGGAATACTTGCAATTGCAGCCCT 716
Query 708 CAAGTTTGGTGCTGCATCATCTGTTGGCGTTGATATTGATCCCCTGGCAATAAAATCTAC 767
||||||||||||||||||||| ||||| |||||||||||||| || |||||||| ||| |
Sbjct 717 CAAGTTTGGTGCTGCATCATCCGTTGGTGTTGATATTGATCCTCTAGCAATAAACTCTGC 776
Query 768 TCGTCATAATGCAGCTCTGAACAACATTCCTTTGGAGAAACTGGAGCTGCACCTTGCACC 827
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 777 AATTCATAATGCAGCTCTGAACAACATTCCGTTGGAGAAACTGGAGCTGCACCTTGCACC 836
Query 828 AAGTGAGAATAGCTCTTCTGGAAGAGAAATACCACTGCAAAAACAACAGTTTGATGTGGT 887
| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||
Sbjct 837 TATTGAGAATAGCTCTTCTGGAAGAGAAATACCATTGCAAAAGGAACAGTTTGATGTAGT 896
Query 888 CATTGCAAACATACTCTTAAACCCGGTTATGGAA-CTGGCGGATCATATCCTTTCATTCG 946
|||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||
Sbjct 897 CATTGCAAACATACTCTTGAACCCGGTTATG-AATCTGGCGGATCATATCCTTTCATTCG 955
Query 947 CAAAACCTGGGGCAACCATTGGCATTTCTGGTATCTTATCTGAACAGCTGCCAAATGTAA 1006
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 956 TGAAACCTGGGGCAACCATTGGCATTTCTGGTATCTTATCTGAACAGCTTCCAAATGTAA 1015
Query 1007 TAGAACGGTACTCTCCCTTCTTGGAGGACATTTCTGTAGCTACAATAGGTGATTGGGTTT 1066
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1016 GAGAACGGTACTCTCCCTTCTTGGAGGACATTTCTGTAGCCACAATAGGTGATTGGGTAT 1075
Query 1067 GCATGAGCGGTACCAAGAAAG-GGAAGTTTATTGATAATTAATCGCTTCTTCAGTGTTAT 1125
||||||| ||||||||||||| ||| |||||||||||| ||||| ||||||||||||||
Sbjct 1076 GCATGAGTGGTACCAAGAAAGAGGA-GTTTATTGATAACTAATCATTTCTTCAGTGTTAT 1134
Query 1126 ATCAGAAAACAGACAATAACATCAAAAGCAGTAGCAAAGCGAAGGCAAGAACAAAAGTGC 1185
|||||||||||||||||||||| ||||||| ||| ||||| |||| |||||||||||||
Sbjct 1135 ATCAGAAAACAGACAATAACATAAAAAGCACTAGTAAAGCAAAGGTAAGAACAAAAGTGT 1194
Query 1186 CTAATCATCAGACATTAAGAACAGATCAGCCTTAATAGAGTTGTGTAAGAGGCTACAACT 1245
||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||
Sbjct 1195 CTAATCATCAGACATTAAGAACATATCAGCCTTAATGGAGTTGTGTAAGAGGTTACAACT 1254
Query 1246 ACACAGGACACGAAACTTAATGTACTCTTCATTGATGTGTTC 1287
||||| || | ||||||||||| ||||||||||| ||| |||
Sbjct 1255 ACACATGATATGAAACTTAATGAACTCTTCATTGTTGTATTC 1296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63302887245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5