BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495472 Length=1287 Score E Sequences producing significant alignments: (Bits) Value AT5G53920.1 | Symbols: | ribosomal protein L11 methyltransfera... 1847 0.0 > AT5G53920.1 | Symbols: | ribosomal protein L11 methyltransferase-related | chr5:21892124-21894267 FORWARD LENGTH=1296 Length=1296 Score = 1847 bits (1000), Expect = 0.0 Identities = 1205/1302 (93%), Gaps = 21/1302 (2%) Strand=Plus/Plus Query 1 ATGTTAGCTTGGAATTTCATCAAACACTTTCCGTGCAAGAATCTCTCCCGCCATATCCTC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTTAGCTTGGAATTTCATCAAACACTTTCCGTGCAAGAATCTCTCCCGCCATATCCTC 60 Query 61 AGAG--A-CAGAGTCAGACCTCTCTGCCTCTTCACTTTTTCTACTCCTCCATCCTCCTTT 117 |||| | ||||||||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 61 AGAGACAGCAGAGTCAGACCTCTCTGCTTCTTCACTTCTTCTACTCCTCCATCCTCCTTT 120 Query 118 TCAAT-TACTGC--CTCTCTCT-CCTATTCTTCTT-CT--TCATCATCTTCGTGCTTCAC 170 ||||| | ||| |||||||| | | |||||||| || || ||||||||||||||||| Sbjct 121 TCAATCT-TTGCGTCTCTCTCTACTTCTTCTTCTTCCTCCTCCTCATCTTCGTGCTTCAC 179 Query 171 TGATGAGTCTTTCACTGCACCTTATCTCTCAGTTCGTATACACTGTCCAAAACATGTCCT 230 ||||||||||||| |||||||||| |||||||||||||| |||||||||||||||| ||| Sbjct 180 TGATGAGTCTTTCGCTGCACCTTACCTCTCAGTTCGTATCCACTGTCCAAAACATGCCCT 239 Query 231 CGATCCATTCTCGGAGGCGCTCTTGTGTTTTGGAGCAAGCTCTGTAACTGTAGATGAAGA 290 |||||||||||||||||| || |||||||||||||||||||||||| |||||||||||| Sbjct 240 CGATCCATTCTCGGAGGCACTTTTGTGTTTTGGAGCAAGCTCTGTAGCTGTAGATGAAGC 299 Query 291 CATCGACGAAGATGCG-GC-TTCTGGGTCTTCTCTTGCTTCCAAAGAGATATGTATAGAA 348 |||||| |||| || | || | ||||||||||||| |||||||||||||||||| Sbjct 300 CATCGAAGAAG--CCGACCAAGATGAGACTTCTCTTGCTTCAAAAGAGATATGTATAGAA 357 Query 349 TCAATATTTCCAGTGCATGAAGAGGTGAAAATGTGCATTTCACAGGCTGCAAATTCCATA 408 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 358 TCAATATTTCCAGTGCATGAAGAGGTGAAAATGTGCATTTCACAAGCTGCAAATTCCATA 417 Query 409 GGCTTGAAAGAGATACCCAAATTCAAAGTTGAAATAGGAGATGAACAAGACTGGATTACC 468 ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 418 GGCTTGAAAGAGATACCCAAATTCAAAGTTGAAATGGGAGATGAACTTGACTGGATTACC 477 Query 469 AAAAACCAGGAATTGTTTCAGCCTGTTGAAATTGCCGAGATG-CTTTGGATTGTACCTGA 527 ||||||||||| |||||||||||||||||||| ||||||| | ||||||||||||||||| Sbjct 478 AAAAACCAGGATTTGTTTCAGCCTGTTGAAATCGCCGAGA-GACTTTGGATTGTACCTGA 536 Query 528 GTGGACATCTCCTCCTGTCACTGAAGCGGTAAACATAATTCTGAACCCTGGATTTGCGTT 587 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 537 GTGGACATCTCCTCCTGTCGCTGAAGCGGTAAACATAATTCTGAACCCTGGATTTGCGTT 596 Query 588 TGGGACTGGAGAACATCCTACTACTAAGCTGTGTCTATTGCTTCTACAAAGTTTGATAAA 647 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 597 TGGGACTGGAGAACATCCTACTACTAAGCTGTGTCTATTGCTTCTACAAAGTTTGATAAA 656 Query 648 AGGCGGGGAAGCATTCCTCGACTATGGTACTGGTTCAGGAATACTTGCAATCGCAGCCCT 707 |||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 657 AGGCGGAGAAGCTTTCCTCGACTATGGTACCGGTTCAGGAATACTTGCAATTGCAGCCCT 716 Query 708 CAAGTTTGGTGCTGCATCATCTGTTGGCGTTGATATTGATCCCCTGGCAATAAAATCTAC 767 ||||||||||||||||||||| ||||| |||||||||||||| || |||||||| ||| | Sbjct 717 CAAGTTTGGTGCTGCATCATCCGTTGGTGTTGATATTGATCCTCTAGCAATAAACTCTGC 776 Query 768 TCGTCATAATGCAGCTCTGAACAACATTCCTTTGGAGAAACTGGAGCTGCACCTTGCACC 827 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 777 AATTCATAATGCAGCTCTGAACAACATTCCGTTGGAGAAACTGGAGCTGCACCTTGCACC 836 Query 828 AAGTGAGAATAGCTCTTCTGGAAGAGAAATACCACTGCAAAAACAACAGTTTGATGTGGT 887 | ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| || Sbjct 837 TATTGAGAATAGCTCTTCTGGAAGAGAAATACCATTGCAAAAGGAACAGTTTGATGTAGT 896 Query 888 CATTGCAAACATACTCTTAAACCCGGTTATGGAA-CTGGCGGATCATATCCTTTCATTCG 946 |||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||| Sbjct 897 CATTGCAAACATACTCTTGAACCCGGTTATG-AATCTGGCGGATCATATCCTTTCATTCG 955 Query 947 CAAAACCTGGGGCAACCATTGGCATTTCTGGTATCTTATCTGAACAGCTGCCAAATGTAA 1006 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 956 TGAAACCTGGGGCAACCATTGGCATTTCTGGTATCTTATCTGAACAGCTTCCAAATGTAA 1015 Query 1007 TAGAACGGTACTCTCCCTTCTTGGAGGACATTTCTGTAGCTACAATAGGTGATTGGGTTT 1066 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 1016 GAGAACGGTACTCTCCCTTCTTGGAGGACATTTCTGTAGCCACAATAGGTGATTGGGTAT 1075 Query 1067 GCATGAGCGGTACCAAGAAAG-GGAAGTTTATTGATAATTAATCGCTTCTTCAGTGTTAT 1125 ||||||| ||||||||||||| ||| |||||||||||| ||||| |||||||||||||| Sbjct 1076 GCATGAGTGGTACCAAGAAAGAGGA-GTTTATTGATAACTAATCATTTCTTCAGTGTTAT 1134 Query 1126 ATCAGAAAACAGACAATAACATCAAAAGCAGTAGCAAAGCGAAGGCAAGAACAAAAGTGC 1185 |||||||||||||||||||||| ||||||| ||| ||||| |||| ||||||||||||| Sbjct 1135 ATCAGAAAACAGACAATAACATAAAAAGCACTAGTAAAGCAAAGGTAAGAACAAAAGTGT 1194 Query 1186 CTAATCATCAGACATTAAGAACAGATCAGCCTTAATAGAGTTGTGTAAGAGGCTACAACT 1245 ||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||| Sbjct 1195 CTAATCATCAGACATTAAGAACATATCAGCCTTAATGGAGTTGTGTAAGAGGTTACAACT 1254 Query 1246 ACACAGGACACGAAACTTAATGTACTCTTCATTGATGTGTTC 1287 ||||| || | ||||||||||| ||||||||||| ||| ||| Sbjct 1255 ACACATGATATGAAACTTAATGAACTCTTCATTGTTGTATTC 1296 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63302887245 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5