BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495474 Length=554 Score E Sequences producing significant alignments: (Bits) Value AT5G53940.1 | Symbols: | Yippee family putative zinc-binding p... 845 0.0 > AT5G53940.1 | Symbols: | Yippee family putative zinc-binding protein | chr5:21896995-21898610 REVERSE LENGTH=580 Length=580 Score = 845 bits (457), Expect = 0.0 Identities = 526/558 (94%), Gaps = 10/558 (2%) Strand=Plus/Plus Query 1 AGATAGAGCAGTGAAGAAGAAATGGGAAGGATATTCACGGTGGAGCTTGAAGGAAGATCT 60 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AGATAGAACAGTGAAGAAGAAATGGGAAGGATATTCACGGTGGAGCTTGAAGGAAGATCT 60 Query 61 TACAGATGCAGGTTCTGCAGAACCCATCTTGCTCTTCCCGATGATCTTGTCTCTCGGTCG 120 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 61 TACAGATGCAGGTTCTGCAGAACCCATCTCGCTCTTCCCGATGATCTTGTCTCTCGGTCG 120 Query 121 TTCCATTGCCGCAGAGGGAAGGCTTACCTTTTCAATCGTGCGGTGAACATAAGTATGGGT 180 || |||||||| ||||| ||||||||||| ||||| ||| |||||||||||||||||||| Sbjct 121 TTTCATTGCCGTAGAGGAAAGGCTTACCTCTTCAACCGTTCGGTGAACATAAGTATGGGT 180 Query 181 CCACTAGAGGAAAGATTGATGCTTTCGGGTATGCACACGGTAGCTGATATTTTCTGCTGC 240 || |||||||||||| |||||||||| ||||||||||| |||||||| |||||||||||| Sbjct 181 CCTCTAGAGGAAAGACTGATGCTTTCCGGTATGCACACCGTAGCTGACATTTTCTGCTGC 240 Query 241 TCTTGTGGACAGAATGTTGGCTGGAAATATGAATCAGCGCACGAGAAAGCTCAGAAGTAT 300 | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 241 TGTTGTGGACAGAATGTTGGCTGGAAATACGAATCAGCGCACGAGAAAGCTCAGAAGTAT 300 Query 301 AAAGAAGGCAAATTTGTTCTGGAAAGAGGAAGGATCGTGGATGAAATCGATTTATCAACT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AAAGAAGGCAAATTTGTTCTGGAAAGAGGAAGGATCGTGGATGAAATCGATTTATCAACT 360 Query 361 GAGGTTTATATCGATACTCATGGTAGCACAAGCGACACAGAAGATTCTTAAATGTTACCT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GAGGTTTATATCGATACTCATGGTAGCACAAGCGACACAGAAGATTCTTAAATGTTACCT 420 Query 421 TTTCTTGTGGAATAATGTTTGTCAAGAGCAGAGCTTGTTAGTGTAGAAATCAGTAGCATG 480 ||| || || | |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 421 TTT-TTCTG---TG-TGTTTGTCAAGAGCAGAGCTTGTTAGTGTAGAAATCTGTAGCATG 475 Query 481 TTTATAGA--TGTGTATGAAACTTGTTGTGTTGTTTTAATATCTCGTAGAAATTA-ATGT 537 |||||||| ||||||| ||||||||||||||||||| |||||||||||||||| |||| Sbjct 476 TTTATAGAGATGTGTATCAAACTTGTTGTGTTGTTTTTATATCTCGTAGAAATTTTATGT 535 Query 538 GAACTT-GAATCATTATT 554 ||| || ||||| ||||| Sbjct 536 GAA-TTCGAATCTTTATT 552 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26573863763 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5