BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495474
Length=554
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53940.1 | Symbols: | Yippee family putative zinc-binding p... 845 0.0
> AT5G53940.1 | Symbols: | Yippee family putative zinc-binding
protein | chr5:21896995-21898610 REVERSE LENGTH=580
Length=580
Score = 845 bits (457), Expect = 0.0
Identities = 526/558 (94%), Gaps = 10/558 (2%)
Strand=Plus/Plus
Query 1 AGATAGAGCAGTGAAGAAGAAATGGGAAGGATATTCACGGTGGAGCTTGAAGGAAGATCT 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGATAGAACAGTGAAGAAGAAATGGGAAGGATATTCACGGTGGAGCTTGAAGGAAGATCT 60
Query 61 TACAGATGCAGGTTCTGCAGAACCCATCTTGCTCTTCCCGATGATCTTGTCTCTCGGTCG 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 TACAGATGCAGGTTCTGCAGAACCCATCTCGCTCTTCCCGATGATCTTGTCTCTCGGTCG 120
Query 121 TTCCATTGCCGCAGAGGGAAGGCTTACCTTTTCAATCGTGCGGTGAACATAAGTATGGGT 180
|| |||||||| ||||| ||||||||||| ||||| ||| ||||||||||||||||||||
Sbjct 121 TTTCATTGCCGTAGAGGAAAGGCTTACCTCTTCAACCGTTCGGTGAACATAAGTATGGGT 180
Query 181 CCACTAGAGGAAAGATTGATGCTTTCGGGTATGCACACGGTAGCTGATATTTTCTGCTGC 240
|| |||||||||||| |||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 181 CCTCTAGAGGAAAGACTGATGCTTTCCGGTATGCACACCGTAGCTGACATTTTCTGCTGC 240
Query 241 TCTTGTGGACAGAATGTTGGCTGGAAATATGAATCAGCGCACGAGAAAGCTCAGAAGTAT 300
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 TGTTGTGGACAGAATGTTGGCTGGAAATACGAATCAGCGCACGAGAAAGCTCAGAAGTAT 300
Query 301 AAAGAAGGCAAATTTGTTCTGGAAAGAGGAAGGATCGTGGATGAAATCGATTTATCAACT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAAGAAGGCAAATTTGTTCTGGAAAGAGGAAGGATCGTGGATGAAATCGATTTATCAACT 360
Query 361 GAGGTTTATATCGATACTCATGGTAGCACAAGCGACACAGAAGATTCTTAAATGTTACCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAGGTTTATATCGATACTCATGGTAGCACAAGCGACACAGAAGATTCTTAAATGTTACCT 420
Query 421 TTTCTTGTGGAATAATGTTTGTCAAGAGCAGAGCTTGTTAGTGTAGAAATCAGTAGCATG 480
||| || || | |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 TTT-TTCTG---TG-TGTTTGTCAAGAGCAGAGCTTGTTAGTGTAGAAATCTGTAGCATG 475
Query 481 TTTATAGA--TGTGTATGAAACTTGTTGTGTTGTTTTAATATCTCGTAGAAATTA-ATGT 537
|||||||| ||||||| ||||||||||||||||||| |||||||||||||||| ||||
Sbjct 476 TTTATAGAGATGTGTATCAAACTTGTTGTGTTGTTTTTATATCTCGTAGAAATTTTATGT 535
Query 538 GAACTT-GAATCATTATT 554
||| || ||||| |||||
Sbjct 536 GAA-TTCGAATCTTTATT 552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26573863763
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5