BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495477
Length=671
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53980.1 | Symbols: ATHB52, HB52 | homeobox protein 52 | chr... 1035 0.0
> AT5G53980.1 | Symbols: ATHB52, HB52 | homeobox protein 52 | chr5:21914045-21914749
FORWARD LENGTH=705
Length=705
Score = 1035 bits (560), Expect = 0.0
Identities = 637/674 (95%), Gaps = 6/674 (1%)
Strand=Plus/Plus
Query 1 GAAGAGAAAAATGGAGAATTCTCAGAGTCAGAGTAAAAACAAGAAGAAGAGGCTAACACA 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 33 GAAGAGAAAAATGGAGAATTCTCAGAGTCAGGGTAAAAACAAGAAGAAGAGGCTAACACA 92
Query 61 AGAGCAAGTAAGACAACTGGAGAAGTGCTTCACTGTTAACAAGAAGCTTGAGCCAGATCT 120
||| ||||| |||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 93 AGATCAAGTTAGACAACTGGAGAAGTGCTTCACTATGAACAAGAAGCTTGAGCCAGATCT 152
Query 121 GAAGCTTCAACTGTCGAACCAGCTTGGTCTACCTCAGAGACAAGTTGCAGTCTGGTTCCA 180
||| |||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 153 GAAACTTCAACTGTCGAACCAGCTTGGTCTACCTCAAAGACAAGTCGCTGTCTGGTTCCA 212
Query 181 AAACAAGCGAGCCAGGTCCAAGACTCAGTCTCTCGAGGTCCAACACTGCACTCTTCAGTC 240
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 213 AAACAAGCGAGCCAGGTTCAAGACTCAGTCTCTTGAGGTCCAACACTGCACTCTTCAGTC 272
Query 241 CAAGCTCGAAGCAGCTCTCTCCGACAAAGCAAAGTTAGAGCATCAAGTGCAGTTTCTTCA 300
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 273 CAAGCACGAAGCAGCTCTCTCCGACAAGGCAAAGTTAGAGCATCAAGTGCAGTTTCTCCA 332
Query 301 AGATGAGGTGAAGAGAACGAGGAATCAGCTTGCTCTGTTCACAAATCAAGATTCTCCTGT 360
||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 333 AGATGAGCTGAAGAGAGCAAGGAATCAGCTTGCTCTGTTCACAAATCAAGATTCTCCTGT 392
Query 361 AAATAACTCTAATCTTGGTTCTTGTGATGAAGGTCATGATGATCAAGTGGTGGTATTCGA 420
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 393 TGATAATTCTAATCTTGGTTCTTGTGATGAAGATCATGATGATCAAGTGGTGGTATTCGA 452
Query 421 CGAGCTTTACGCTTGTTTTGTTAGCAATGGACATGGATCTTCATCAACCTCATGGGTCTG 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 CGAGCTTTACGCTTGCTTTGTTAGCAATGGACATGGATCTTCATCAACCTCATGGGTCTG 512
Query 481 ATTCTGTTTCTACATAGACAAGATTCCAATATTTA-A-TCTTCTCTCTGTTTTGTTTCGT 538
|||||||||| || ||||||||||||||||| || | |||| |||||||||||||||||
Sbjct 513 ATTCTGTTTCGACGCAGACAAGATTCCAATATATATAGTCTTGTCTCTGTTTTGTTTCGT 572
Query 539 TTGAT-TGGTTTCTCTTTGTCTGGATAGATTTACAATCTGTAATTAAAGTCATTCAGACA 597
||||| || |||||||||||||| ||||||||| ||| ||||||||||||||||||||||
Sbjct 573 TTGATCTG-TTTCTCTTTGTCTGAATAGATTTAAAATTTGTAATTAAAGTCATTCAGACA 631
Query 598 TTCCACTAATACAAAGAGAGGAATTTTCTTCATTTCTTGTTATGGTTATAAGAATTGCAA 657
||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 632 TTC-ACTAATACAAAGAGATGA-TTTTCTTCATTTCTTGTTATGGTTATAAGAATTGCAA 689
Query 658 TGTTGTAACAACAC 671
||||||||||||||
Sbjct 690 TGTTGTAACAACAC 703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32451258962
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5