BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495484
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54070.1 | Symbols: AT-HSFA9, HSFA9 | heat shock transcripti... 1134 0.0
> AT5G54070.1 | Symbols: AT-HSFA9, HSFA9 | heat shock transcription
factor A9 | chr5:21943983-21945651 FORWARD LENGTH=1512
Length=1512
Score = 1134 bits (614), Expect = 0.0
Identities = 895/1020 (88%), Gaps = 61/1020 (6%)
Strand=Plus/Plus
Query 3 AAATAGAAACGGCGTAGGAAGCTACTATGACGGCGATTCCAAATGTTATCGATATTGAA- 61
|||||||||||| ||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 10 AAATAGAAACGGTGTAGGAAGCTACTATGACGGCAATTCCAAACGTCGTCGATATTGAAT 69
Query 62 --TCTTCGTCTTCGCTTTGTC-A-AGA--G--AC-G-G--TGTCTCCG-T----CA-G-T 102
||||| ||||||||||||| | ||| | || | | ||| ||| | | | |
Sbjct 70 CTTCTTCCTCTTCGCTTTGTCAAGAGACGGCAACGGAGACCGTCACCGTTGAAAGAGGCT 129
Query 103 TGT-TGA--GA-CTGCGAAGCTAGACCACGTCGTGTCACTAATCAAGGAAGAGGAGGATG 158
|| ||| | || | |||| |||| ||||||| | |||||||||||||||||||||||
Sbjct 130 CGTCTGATTCATCTTCAAAGCCAGACGACGTCGTTTTACTAATCAAGGAAGAGGAGGATG 189
Query 159 ACGTCG-----TT-TCACTTGGTTTTTGGAAATTGCACGAGATAGGTTTAATTACACCGT 212
||| || || |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 190 ACGCCGTTAACTTGTCACTTGGTTTTTGGAAATTGCACGAGATAGGTTTAATAACACCGT 249
Query 213 TCTTGAGAAAGACGTTTGAGATAGTTGAGGACACAGTAACAGACCCGGTTGTATCATGGA 272
|||||||||||||||||||||| || || |||| ||||||||||||||||||||||||||
Sbjct 250 TCTTGAGAAAGACGTTTGAGATCGTCGATGACAAAGTAACAGACCCGGTTGTATCATGGA 309
Query 273 GCCTGACCCGTAAAAGCTTTATCATTTGGGATTCTTACGACTTCTCGGAGAATCTTCTTC 332
||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 310 GCCCGACCCGTAAAAGCTTTATCATTTGGGATTCTTACGAGTTCTCAGAGAATCTACTTC 369
Query 333 CTAAATACTTCAAGCACAAGAACTTCTCCAGTTTCCTCCGCCAGCTTAACTCCTATGGTT 392
| |||||||||||||||||||||||||||||||| | || ||||||||||| || ||||
Sbjct 370 CCAAATACTTCAAGCACAAGAACTTCTCCAGTTTTATTCGTCAGCTTAACTCTTACGGTT 429
Query 393 TTAAAAAGGTTGATTCAGATAGGTGGGAATTTGCTAACGAAGGGTTTCAAGGAGGGAAGA 452
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 TTAAAAAGGTCGATTCAGATAGGTGGGAATTTGCTAACGAAGGGTTTCAAGGAGGGAAGA 489
Query 453 AATATTTGCTTAAGAACATCAAGAGGAGAAGCAAAAGTACTAAATGT---AACAAGGAAG 509
|| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 490 AACATTTGCTTAAGAACATCAAGAGGAGAAGCAAAAACACTAAATGTTGTAACAAGGAAG 549
Query 510 CGAGCACCACTACCACCACCACCACAGAGACAGAGGTTGAGTTATTGAAGGAGGAACAGA 569
|||| ||||||||| || | ||||| |||||||||| |||||||||||||||||
Sbjct 550 CGAG------TACCACCACGAC-A--GAGACTGAGGTTGAGTCATTGAAGGAGGAACAGA 600
Query 570 GTCCAATGAGATCGGAGATGTTGAAGTTGAAACAACAACAGGAAGAATCTCAACATCAGA 629
|||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 601 GTCCAATGAGATTGGAGATGTTGAAGCTGAAACAACAACAAGAAGAATCTCAACATCAGA 660
Query 630 TGGTCACTGTGCAGGAGAAGATCCACGGAGTTGA-ATCCGAACAACAACATATGCTTAGT 688
|||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||
Sbjct 661 TGGTCACTGTGCAGGAGAAGATCCACGGAGTTGATA-CCGAACAACAGCATATGCTTAGT 719
Query 689 TTCTTTGCAAAGTTGGTTAAAGATCAAAGATTTGTGGAGAGGCTGTTGAAAAAGAGGAAG 748
|||||||||||||||| |||||||||||||||||| ||||| ||| |||| ||||| |||
Sbjct 720 TTCTTTGCAAAGTTGGCTAAAGATCAAAGATTTGTAGAGAGACTGGTGAAGAAGAGAAAG 779
Query 749 ATGAAACA-ACAGAGAGAGCTCCAAGCAGCTGAATTCGTGAAGAAGCTCAAGTTGCTTCA 807
|||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 780 ATGAAA-ATACAGAGAGAGCTAGAAGCAGCTGAATTCGTGAAGAAGCTCAAGTTGCTTCA 838
Query 808 GGATCAAGAAACTCAAAACAACTTGCTAGATGTAGAAAACCATCTGGTCATTAGAGAATT 867
|||||||||||||||||| |||||| |||||||||||| | | || | ||
Sbjct 839 GGATCAAGAAACTCAAAAGAACTTGTTAGATGTAGAAA-------G---A---GA-A-TT 883
Query 868 TATGGCCATGGCTGCAACACAACACAATCCCAAGCCTGATATTTTGATGAACAATGAAAG 927
||||||||||||||||||| ||||||||||| ||||||| |||||| |||||||| ||||
Sbjct 884 TATGGCCATGGCTGCAACAGAACACAATCCCGAGCCTGACATTTTGGTGAACAATCAAAG 943
Query 928 CGGGAATAGGAGATGTCAGCTTAACACAGAGGACCTACTTGTTGACGGTGGTTCGATGGA 987
|||||||| |||||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct 944 CGGGAATACGAGATGTCAGCTTAACTCAGAGGACCTACTTGTTGACGGTGGCTCAATGGA 1003
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51188595793
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5