BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495484 Length=1044 Score E Sequences producing significant alignments: (Bits) Value AT5G54070.1 | Symbols: AT-HSFA9, HSFA9 | heat shock transcripti... 1134 0.0 > AT5G54070.1 | Symbols: AT-HSFA9, HSFA9 | heat shock transcription factor A9 | chr5:21943983-21945651 FORWARD LENGTH=1512 Length=1512 Score = 1134 bits (614), Expect = 0.0 Identities = 895/1020 (88%), Gaps = 61/1020 (6%) Strand=Plus/Plus Query 3 AAATAGAAACGGCGTAGGAAGCTACTATGACGGCGATTCCAAATGTTATCGATATTGAA- 61 |||||||||||| ||||||||||||||||||||| |||||||| || ||||||||||| Sbjct 10 AAATAGAAACGGTGTAGGAAGCTACTATGACGGCAATTCCAAACGTCGTCGATATTGAAT 69 Query 62 --TCTTCGTCTTCGCTTTGTC-A-AGA--G--AC-G-G--TGTCTCCG-T----CA-G-T 102 ||||| ||||||||||||| | ||| | || | | ||| ||| | | | | Sbjct 70 CTTCTTCCTCTTCGCTTTGTCAAGAGACGGCAACGGAGACCGTCACCGTTGAAAGAGGCT 129 Query 103 TGT-TGA--GA-CTGCGAAGCTAGACCACGTCGTGTCACTAATCAAGGAAGAGGAGGATG 158 || ||| | || | |||| |||| ||||||| | ||||||||||||||||||||||| Sbjct 130 CGTCTGATTCATCTTCAAAGCCAGACGACGTCGTTTTACTAATCAAGGAAGAGGAGGATG 189 Query 159 ACGTCG-----TT-TCACTTGGTTTTTGGAAATTGCACGAGATAGGTTTAATTACACCGT 212 ||| || || |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 190 ACGCCGTTAACTTGTCACTTGGTTTTTGGAAATTGCACGAGATAGGTTTAATAACACCGT 249 Query 213 TCTTGAGAAAGACGTTTGAGATAGTTGAGGACACAGTAACAGACCCGGTTGTATCATGGA 272 |||||||||||||||||||||| || || |||| |||||||||||||||||||||||||| Sbjct 250 TCTTGAGAAAGACGTTTGAGATCGTCGATGACAAAGTAACAGACCCGGTTGTATCATGGA 309 Query 273 GCCTGACCCGTAAAAGCTTTATCATTTGGGATTCTTACGACTTCTCGGAGAATCTTCTTC 332 ||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| Sbjct 310 GCCCGACCCGTAAAAGCTTTATCATTTGGGATTCTTACGAGTTCTCAGAGAATCTACTTC 369 Query 333 CTAAATACTTCAAGCACAAGAACTTCTCCAGTTTCCTCCGCCAGCTTAACTCCTATGGTT 392 | |||||||||||||||||||||||||||||||| | || ||||||||||| || |||| Sbjct 370 CCAAATACTTCAAGCACAAGAACTTCTCCAGTTTTATTCGTCAGCTTAACTCTTACGGTT 429 Query 393 TTAAAAAGGTTGATTCAGATAGGTGGGAATTTGCTAACGAAGGGTTTCAAGGAGGGAAGA 452 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 430 TTAAAAAGGTCGATTCAGATAGGTGGGAATTTGCTAACGAAGGGTTTCAAGGAGGGAAGA 489 Query 453 AATATTTGCTTAAGAACATCAAGAGGAGAAGCAAAAGTACTAAATGT---AACAAGGAAG 509 || ||||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 490 AACATTTGCTTAAGAACATCAAGAGGAGAAGCAAAAACACTAAATGTTGTAACAAGGAAG 549 Query 510 CGAGCACCACTACCACCACCACCACAGAGACAGAGGTTGAGTTATTGAAGGAGGAACAGA 569 |||| ||||||||| || | ||||| |||||||||| ||||||||||||||||| Sbjct 550 CGAG------TACCACCACGAC-A--GAGACTGAGGTTGAGTCATTGAAGGAGGAACAGA 600 Query 570 GTCCAATGAGATCGGAGATGTTGAAGTTGAAACAACAACAGGAAGAATCTCAACATCAGA 629 |||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 601 GTCCAATGAGATTGGAGATGTTGAAGCTGAAACAACAACAAGAAGAATCTCAACATCAGA 660 Query 630 TGGTCACTGTGCAGGAGAAGATCCACGGAGTTGA-ATCCGAACAACAACATATGCTTAGT 688 |||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||| Sbjct 661 TGGTCACTGTGCAGGAGAAGATCCACGGAGTTGATA-CCGAACAACAGCATATGCTTAGT 719 Query 689 TTCTTTGCAAAGTTGGTTAAAGATCAAAGATTTGTGGAGAGGCTGTTGAAAAAGAGGAAG 748 |||||||||||||||| |||||||||||||||||| ||||| ||| |||| ||||| ||| Sbjct 720 TTCTTTGCAAAGTTGGCTAAAGATCAAAGATTTGTAGAGAGACTGGTGAAGAAGAGAAAG 779 Query 749 ATGAAACA-ACAGAGAGAGCTCCAAGCAGCTGAATTCGTGAAGAAGCTCAAGTTGCTTCA 807 |||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 780 ATGAAA-ATACAGAGAGAGCTAGAAGCAGCTGAATTCGTGAAGAAGCTCAAGTTGCTTCA 838 Query 808 GGATCAAGAAACTCAAAACAACTTGCTAGATGTAGAAAACCATCTGGTCATTAGAGAATT 867 |||||||||||||||||| |||||| |||||||||||| | | || | || Sbjct 839 GGATCAAGAAACTCAAAAGAACTTGTTAGATGTAGAAA-------G---A---GA-A-TT 883 Query 868 TATGGCCATGGCTGCAACACAACACAATCCCAAGCCTGATATTTTGATGAACAATGAAAG 927 ||||||||||||||||||| ||||||||||| ||||||| |||||| |||||||| |||| Sbjct 884 TATGGCCATGGCTGCAACAGAACACAATCCCGAGCCTGACATTTTGGTGAACAATCAAAG 943 Query 928 CGGGAATAGGAGATGTCAGCTTAACACAGAGGACCTACTTGTTGACGGTGGTTCGATGGA 987 |||||||| |||||||||||||||| ||||||||||||||||||||||||| || ||||| Sbjct 944 CGGGAATACGAGATGTCAGCTTAACTCAGAGGACCTACTTGTTGACGGTGGCTCAATGGA 1003 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51188595793 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5