BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495487
Length=2546
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54090.1 | Symbols: | DNA mismatch repair protein MutS, typ... 2512 0.0
AT5G54080.1 | Symbols: HGO | homogentisate 1,2-dioxygenase | ch... 239 1e-61
> AT5G54090.1 | Symbols: | DNA mismatch repair protein MutS, type
2 | chr5:21948124-21952550 REVERSE LENGTH=2550
Length=2550
Score = 2512 bits (1360), Expect = 0.0
Identities = 1498/1564 (96%), Gaps = 11/1564 (1%)
Strand=Plus/Plus
Query 990 GATTAACGCTCGAGCAACTTACAGTCGTGCATATGGTGGTGCACATCCTGATATATACTT 1049
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 GATAAACGCTCGAGCAACTTACAGTCGTGCATATGGTGGTGCACATCCTGATATATACTT 1049
Query 1050 GCCACCTGAAGATGGGGTTGAATCTTTGTCCGCTGGAGAAAACTCACTGCAGAGTAACTT 1109
|||||||||||||| ||||||||||||||| |||||||||||||| | | | | ||||||
Sbjct 1050 GCCACCTGAAGATGAGGTTGAATCTTTGTCTGCTGGAGAAAACTCGCCGGATATTAACTT 1109
Query 1110 ATCC-AGTGAGAAATTGCTTCCTAGAAAAGAGTGGTTGCTGTATCTACCTAGATGTTATC 1168
| || ||||||||| |||| ||| |||||| ||||||||||||||||||||||||||||
Sbjct 1110 A-CCGAGTGAGAAACCGCTTTCTAAAAAAGAATGGTTGCTGTATCTACCTAGATGTTATC 1168
Query 1169 ATCCTCTATTGCTTTACCAACACAAGAAAGGCATAAGAAAGACGCGGGAGACGGTAAAAT 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 ATCCTCTATTGCTTTACCAACACAAGAAAGGCATAAGAAAGACGCGGGAGACGGTAAAAT 1228
Query 1229 TTCATAAAACAGCAGACACAGTATTATCAGGAACTCCACCAATTCCAGCGGATTTCCAGA 1288
||||||||||||||||||| |||||||||||| ||||||||||||| || ||||||||||
Sbjct 1229 TTCATAAAACAGCAGACACTGTATTATCAGGAGCTCCACCAATTCCGGCTGATTTCCAGA 1288
Query 1289 TCTCTAAGGGCACTAGAGTTTTGGTTATTACGGGTCCAAACACAGGAGGTAAAACCATTT 1348
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1289 TCTCTAAGGGCACTAGAGTTTTGGTTATTACCGGTCCAAACACAGGAGGTAAAACCATTT 1348
Query 1349 GCTTGAAATCAGTTGGACTCGCTGCAATGATGGCAAAATCAGGTCTTTATGTTCTAGCAA 1408
|||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1349 GCTTGAAATCAGTTGGGCTCGCTGCGATGATGGCAAAATCGGGTCTTTATGTTCTAGCAA 1408
Query 1409 CTGAATCTGCACGCATACCTTGGTTTGACAACATTTATGCTGATATTGGTGATGAACAAT 1468
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1409 CTGAATCTGCACGCATACCTTGGTTTGACAATATTTATGCTGATATTGGTGATGAACAAT 1468
Query 1469 CTTTGCTGCAGTCACTTTCTACTTTTTCTGGTCATTTGAAACAAATAAGTGAAATTCTCT 1528
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1469 CTTTGCTGCAGTCACTTTCTACCTTTTCTGGTCATTTGAAACAAATAAGTGAAATTCTCT 1528
Query 1529 CGCATTCAACAAGCAGATCACTTGTGTTGTTAGATGAAGTTGGAGCTGGAACAAATCCGC 1588
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1529 CGCATTCAACGAGCAGATCACTTGTGTTGTTAGATGAAGTTGGAGCTGGAACAAATCCCC 1588
Query 1589 TTGAAGGAGCTGCATTAGGGATGGCAATTCTCGAATCTTTTGCAGAAAGCGGTTCTTTAC 1648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1589 TTGAAGGAGCTGCATTAGGGATGGCAATTCTCGAATCTTTTGCAGAAAGCGGTTCTTTAC 1648
Query 1649 TCACGATGGCAACCACACATCATGGAGAGCTTAAGACGCTTAAATACAGCAATTCCGCCT 1708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1649 TCACGATGGCAACCACACATCATGGAGAGCTTAAGACGCTTAAATACAGCAATTCCGCCT 1708
Query 1709 TTGAGAATGCTTGCATGGAGTTTGATGACCTGAACCTAAAACCCACTTTCAAAAT-CTTA 1767
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
Sbjct 1709 TTGAGAATGCTTGCATGGAGTTTGATGACCTGAACCTAAAACCCACTTACAAAATTCT-A 1767
Query 1768 TGGGGAGTACCAGGTCGTTCGAATGCAATAAACATAGCTGAAAGGTTGGGGCTTCCATGT 1827
||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 1768 TGGGGAGTACCAGGTCGGTCGAATGCAATAAACATAGCCGATAGGTTGGGGCTTCCATGT 1827
Query 1828 GATATCATCGAGAGTGCTCGTGAACTCTATGGCTCTGCAAGTGCTGAGATTAATGAGGTC 1887
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1828 GATATCATCGAAAGTGCTCGTGAACTCTATGGCTCTGCAAGTGCTGAGATCAATGAGGTC 1887
Query 1888 ATACTTGACATGGAACGGTACAAGCAAGAATATCAGAGACTTTTGAATGAGTCACGTGTT 1947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1888 ATACTTGACATGGAACGGTACAAGCAAGAATATCAGAGACTTTTGAATGAGTCACGTGTT 1947
Query 1948 TATATAAGGCTATCAAGAGAGCTTCATGATAATCTACTCACAGCACAAAAGAACATTAAC 2007
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1948 TATATAAGGCTCTCAAGAGAGCTTCATGAGAATCTACTCACAGCACAAAAGAACATTAAC 2007
Query 2008 GACCATGCCACCAAAGAGAAACGAAAAATGAGACAAGAACTAACTCAGGCTGGTTCGATG 2067
|| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2008 GATCATTCCACCAAAGAGAGACGAAAAATGAGACAAGAACTAACTCAGGCTGGTTCGATG 2067
Query 2068 ACTCGTTCTACACTTCGCAGAACATTGCAACAGTTTCGCGCATCTGCTGCACAATCATCT 2127
||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| |||
Sbjct 2068 ACTCGTTCTACACTTCGCAGAACATTGCAACAGTTTCGCTCATCTGCTGGAAAATCTTCT 2127
Query 2128 CAGTCAAAGGTAGCTACGCAACTCCaaaaaaaaGTCGAAACGACAAAGGATGAAGATAGT 2187
|||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||| |
Sbjct 2128 CAGTCAAAGGTAGCTACGCAACTCCAAACAAAAGTCAAAACGACGAAGGATGAAGATAAT 2187
Query 2188 GGAATTCGTTCATCATCTGTGGTAGAGAGACGACCAACTTC-TGAAGCTGCCGCTCAAAA 2246
|||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||
Sbjct 2188 GGAATTCGTTCATCATCTGTGGTAGAGAGACGACCA-CTTCCTGAAGCTGCGGCTCAAAA 2246
Query 2247 GGTTCCTGAAGTCGGTAGCTCGGTGTTCGTTTCTTCTCTTGGTAAAAAAGCGACTGTTTT 2306
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 2247 GGTTCCTGAAGTCGGTAGCTCGGTGTTTGTTTCTTCTCTTGGTAAAAAAGCGACCGTTTT 2306
Query 2307 GAAAGTAGAACAGTCGAAGAAAGAGATCTTAGTGCAAGTAGGCATCATGAAGATGAAAGT 2366
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2307 GAAGGTAGAACATTCGAAGAAAGAGATCTTAGTGCAAGTAGGCATCATGAAGATGAAAGT 2366
Query 2367 GAAACTGACTGATGTTGTAGCCTGAATCTAAATGGCACAGTTATATTCATAAGTATCTAA 2426
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 2367 GAAACTGACTGATGTTGTGGCCTGAATCTAAATGGCACAGTTATATTCATTAGTATCTAA 2426
Query 2427 ACCAACACCGTTATATTAGCTTCAGAGTACAAAT-GATGTAATTAAAGTGATATGAAGAA 2485
|||||||||||||||||||||||||||||||||| | |||| ||||||||| ||||||||
Sbjct 2427 ACCAACACCGTTATATTAGCTTCAGAGTACAAATAG-TGTATTTAAAGTGACATGAAGAA 2485
Query 2486 ATATTACCTACTTATTA---CATATGTACTTGTTGTATGCTTCTTTCTTATACAAGTATA 2542
| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 2486 ACATTACCTACTTATTATTACATATGTACTTGTTATATGCTTCTTTCTTATACAAGTATA 2545
Query 2543 TGGT 2546
||||
Sbjct 2546 TGGT 2549
Score = 1230 bits (666), Expect = 0.0
Identities = 753/795 (95%), Gaps = 5/795 (1%)
Strand=Plus/Plus
Query 11 TAGCTTTCTGCAACAACTGTGCCTTAGTGATAAGAA-ACTCTATCGGAAACAGAAACAGA 69
|||||||||||||| | ||||| |||||||||||| | | | | | ||||||||
Sbjct 17 TAGCTTTCTGCAAC-A--GTGCCCTAGTGATAAGAAGA-AGAAACTCTATCGGAAACAGA 72
Query 70 AACAGAGTAAATTTGAGTTTAATCTCGTCTTCTTCTCCGACTCTTGTTTGCCGTTCAAAG 129
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 73 AACAGAGTAAAGTTGAGTTTAATCTCGTCTTCTTCTCCGACTCTTGTTTGCCATTCAAAG 132
Query 130 TCTAAATCTCAAACCGATAGCTTGAGGGTATTGGAATGGGACAAGCTCTGTGATGTTGTC 189
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 133 TCTAAATCTCAAACCGATAGCTTGAGGGTGTTGGAATGGGACAAGCTCTGCGATGTTGTC 192
Query 190 GCTTCTTTTGCTCGTACTTCTTTAGGTCGTGAAGCTACAAAGAAAAAGCTTTGGTCTCTT 249
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 193 GCTTCTTTTGCTCGTACTTCTTTAGGCCGAGAAGCTACAAAGAAAAAGCTTTGGTCTCTT 252
Query 250 GACCAGAGTTTCAGTGAAAGTTTGAAGCTTTTGGATGAAACAGATGCCGCCATTAAAATG 309
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 253 GACCAGAGTTTCAGTGAAAGTTTGAAACTTTTAGATGAAACTGATGCCGCCATTAAAATG 312
Query 310 CTTGAACATGGTTCCTTCTGTCTTGACCTCTCCAGTATTCATATCTCCCTCGTTGAATCG 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 CTTGAACATGGTTCCTTCTGTCTTGACCTCTCCAGTATTCATATCTCCCTCGTTGAATCG 372
Query 370 GGAATTCGGCATGCTAAGAGGAGGCTTTCCTTACGAGCAGACCAAGCACTTGAAATTGCT 429
|||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 373 GGAATTCGTCATGCTAAGAGGAGGCTTTCTTTACGAGCAGACCAAGCACTTGAAGTTGCT 432
Query 430 TCTCTTCTTCGATTTTTCGATACGTTGCAGTTTGATTTGAAAGCTGCCATTAAGCAAGAT 489
||||||||| | || ||||| | |||||| |||||||||||||||||||||||||||||
Sbjct 433 TCTCTTCTTAGGTTCTTCGAAAATTTGCAGCTTGATTTGAAAGCTGCCATTAAGCAAGAT 492
Query 490 GGAGATTGGTGCAAACGGTTTATGCCTCTATCTGAATTGATAATGCACCCTGTGATAAAT 549
|||||||||| |||||||||||||||| |||||||||||||| ||||||||||||| |||
Sbjct 493 GGAGATTGGTACAAACGGTTTATGCCTTTATCTGAATTGATAGTGCACCCTGTGATTAAT 552
Query 550 AGATCATTTGTCAAGTTGGTTGAACAAGTTATAGATCCTGATGGTACAATCAAAGATTCC 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 AGATCATTTGTCAAGTTGGTTGAACAAGTTATAGATCCTGATGGTACAATCAAAGATTCC 612
Query 610 GCGAGTAGTGCCCTGAGACAATCACGTGAACGAGTGCAAACACTTGAAAGAAAGCTGCAG 669
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 613 GCGAGTAGTGCCCTGAGACAATCACGTGAACGAGTGCAGACACTTGAAAGAAAGCTGCAG 672
Query 670 CAACTGCTGGATGCTATCATAAGGAGCCAAAAGGATGACGAATCTGTCATGGTAGCGGCT 729
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 673 CAACTGCTGGATGCTATCATAAGGAGCCAAAAGGATGACGAATCTGTCATGTTAGCGGCT 732
Query 730 GAAATTGATGGAAGATGGTGTATACAAATGAGCTCGAATCAGCTAACTTCTGTTAATGGT 789
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 733 GAAATTGATGGAAGATGGTGTATACAAATGAGCTCAAATCAGCTAACTTCTGTTAATGGT 792
Query 790 CTTTTGCTTTCCAGT 804
||| |||||||||||
Sbjct 793 CTTCTGCTTTCCAGT 807
Score = 228 bits (123), Expect = 2e-58
Identities = 130/133 (98%), Gaps = 1/133 (1%)
Strand=Plus/Plus
Query 861 TTT-CAGTGGTTCAGGTGGAGGGACTGTGGCGGAGCCAATAGCTGCGGTCTCTATGAATG 919
||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 800 TTTCCAGTGGTTCAGGTGGAGGGACTGCGGCGGAGCCAATAGCTGCGGTGTCTATGAATG 859
Query 920 ATGACCTTCAAAGTGCGAGAGCATCAGTTGCAAAGGCTGAGGCAGAGATTCTTTCAATGT 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 ATGACCTTCAAAGTGCGAGAGCATCAGTTGCAAAGGCTGAGGCAGAGATTCTTTCAATGT 919
Query 980 TAACTGAAAAGAT 992
|||||||||||||
Sbjct 920 TAACTGAAAAGAT 932
> AT5G54080.1 | Symbols: HGO | homogentisate 1,2-dioxygenase |
chr5:21945869-21948285 FORWARD LENGTH=1652
Length=1652
Score = 239 bits (129), Expect = 1e-61
Identities = 152/162 (94%), Gaps = 5/162 (3%)
Strand=Plus/Minus
Query 2389 TGAATCTAAATGGCACAGTTATATTCATAAGTATCTAAACCAACACCGTTATATTAGCTT 2448
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1652 TGAATCTAAATGGCACAGTTATATTCATTAGTATCTAAACCAACACCGTTATATTAGCTT 1593
Query 2449 CAGAGTACAAATGA-TGTAATTAAAGTGATATGAAGAAATATTACCTAC---TTATTACA 2504
|||||||||||| | |||| ||||||||| ||||||||| ||||||||| ||||||||
Sbjct 1592 CAGAGTACAAAT-AGTGTATTTAAAGTGACATGAAGAAACATTACCTACTTATTATTACA 1534
Query 2505 TATGTACTTGTTGTATGCTTCTTTCTTATACAAGTATATGGT 2546
|||||||||||| |||||||||||||||||||||||||||||
Sbjct 1533 TATGTACTTGTTATATGCTTCTTTCTTATACAAGTATATGGT 1492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126370529417
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5