BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495493
Length=1754
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54130.2 | Symbols: | Calcium-binding endonuclease/exonucle... 2540 0.0
> AT5G54130.2 | Symbols: | Calcium-binding endonuclease/exonuclease/phosphatase
family | chr5:21962600-21965604 FORWARD LENGTH=1936
Length=1936
Score = 2540 bits (1375), Expect = 0.0
Identities = 1610/1716 (94%), Gaps = 45/1716 (3%)
Strand=Plus/Plus
Query 78 TTAGTTTCTAATTTTGGGTTTAATTTTTGTTTC-GGTTT-AAAGAATTCGAAAGAGCGGT 135
|||||||||||||||||| |||| ||| ||||| || ||||||||||||||||
Sbjct 118 TTAGTTTCTAATTTTGGG-TTAA-AAGAAATTCGGGTTTCAATTAATTCGAAAGAGCGGT 175
Query 136 CACGACGTTTCATAGAGAATCGTCATCTTCTTCTTCTTCG-G----TTTTGTTCTCTCCt 190
||||||||||| |||||||||||| ||||| ||||||||| | ||||||| ||||||
Sbjct 176 CACGACGTTTCTTAGAGAATCGTCTTCTTCATCTTCTTCGTGAACTTTTTGTTTTCTCCT 235
Query 191 ttttttGATTTTCACCGCC-G-GA-----G-A-TTTT----TTATTCGCCGGCGGTTTAG 237
||||||||||||||||||| | || | | |||| |||||||||||||||||||
Sbjct 236 TTTTTTGATTTTCACCGCCGGAGATTTTTGTATTTTTCCGATTATTCGCCGGCGGTTTAG 295
Query 238 AGATAATGAAGGGGAGGATATCAAAAATAGGAAGCTATGCAATCTCATCTTCCATTAGAG 297
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 296 AGATAATGAAGGGGAGGATATCAAAAATAGGAAGCTATGCAATCTCGTCTTCCATTAGAG 355
Query 298 ATCAACATCAGCAGCAACCTTGTATTTCTTGTACTACTTTCAATATCCTTGCTCCGATCT 357
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 ATCAGCAT---CAGCAACCTTGTATTTCTTGTACTACTTTCAATATCCTTGCTCCGATCT 412
Query 358 ATAAACGTCTCTCTCACAAGGATCAAAGTCTTCGTGAAAGCGATAATCGAGCGTATTGGC 417
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 413 ATAAACGTCTCTCTCACAAGGATCAAAGTCTTCGTGAAAGTGATAATCGAGCGTATTGGC 472
Query 418 TTGGAAGGAATCATAGAATCCTTGATTGGTTATTGTATGAGAGATCTTCAATCATATGTT 477
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 473 TTGGAAGGAATCATCGAATCATTGATTGGTTATTGTATGAGAGATCTTCAATCATATGTT 532
Query 478 TACAGGAGTTTTGGGTAGGCAATGAAGAGCTTGTTAATTTATATGAGAAGAGACTTGGTG 537
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 533 TACAGGAGTTTTGGGTAGGCAATGAAGAGCTTGTTAATTTGTACGAGAAGAGACTTGGAG 592
Query 538 ACGCTGGTTATTTAAGTTACAAGCTTGGTCGTACTAATAATCGTGGTGATGGTCTGCTTA 597
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 593 ACGCTGGTTATCTAAGTTACAAGCTTGGTCGTACTAATAATCGTGGTGATGGTTTGCTTA 652
Query 598 CGGCTGTTCATAAGGACTATTTTAGAGTTGTGAACTCGAGGGATTTGCTTTTTAACGATT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 653 CGGCTGTTCATAAGGACTATTTTAGAGTTGTGAACTCGAGGGATTTGCTTTTTAATGATT 712
Query 658 GTGGTGATCGAGTCGCGCAGTTGCTACATGTAGAATTAGTTCCTCCTTACTCTCAGTTTG 717
||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 713 GTGGTGATCGAGTTGCTCAGTTGCTACATGTAGAATTAGTTCCTCCTTACTCTCAGTATG 772
Query 718 ATGCTCATCAAGAAGTTTTGATTGTGAATACTCATTTGTTGTTTCCTCATGATTCAACAC 777
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 ATGCTCATCAAGAAGTTTTGATTGTGAATACTCATTTGTTGTTTCCTCATGATTCAACAT 832
Query 778 TGTCTATAGTAAGATTGCAGCAGGTGTATAAGATTCTTCAGTATGTAGAATCTTATCAGA 837
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 833 TGTCCATAGTAAGATTGCAGCAGGTATATAAGATTCTTCAGTATGTAGAATCTTACCAGA 892
Query 838 AGGAAGTTAATCTAAGTCCTATGCCTATTATTCTTTGCGGAGATTGGAACGGAAGTAAGC 897
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 893 AGGAAGTTAATCTCAGTCCCATGCCTATTATTCTTTGCGGAGATTGGAACGGAAGTAAGC 952
Query 898 GAGGGCATGTCTACAAGTTTCTCAGGTCACAGGGTTTTGTGTCATCTTACGACACTGCTC 957
|||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 953 GAGGACATGTCTACAAGTTTCTCAGGTCACAGGGTTTTGTGTCGTCTTACGATACTGCTC 1012
Query 958 ATCGGTACACAGATTCAGATGCTCACAAGTGGGTAAGCCACCGGAATCATCGGGGTAACA 1017
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 ATCGGTACACAGACTCAGATGCTCACAAGTGGGTAAGCCACCGGAATCATCGGGGTAACA 1072
Query 1018 TATGCGCTGTCGATTTCATATGGCTTTTAAATCCAAATCGGTATAGAAAGCTGCTAAAAA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 TATGCGCTGTCGATTTCATATGGCTTTTAAATCCAAATCGGTATAGAAAGCTGCTAAAAA 1132
Query 1078 CAAGTTGGAGCGAGGCAGTGTTTGGCATGTTCAGGTATCTACTAAGAAGAGCTTCACTAA 1137
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1133 CAAGTTGGAGCGAGGCAGTCTTTGGCATGTTCAGGTATCTACTGAGAAGAGCTTCACTAA 1192
Query 1138 CAGCTGAAGATGCTTTTGCTTTTCTGAAAACTGACAATGATGGTGACTACATTACATTCA 1197
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1193 CAGCTGAAGATGCTTTTGCTTTTCTAAAAACTGACAATGATGGTGACCACATTACATTCA 1252
Query 1198 TGGGCTTCTGTGAGACTCTTCGGCAGCTCAATCTAACAGGTCATTGCAATGGACTAACAA 1257
||||||||||||||||||||||||||||||||||||||||||| || |||||||| || |
Sbjct 1253 TGGGCTTCTGTGAGACTCTTCGGCAGCTCAATCTAACAGGTCACTGTAATGGACTCACGA 1312
Query 1258 CAAAAGAGATCAAAGATTTGTGGATTCAAGCAGACATTGATGGAAACGGTCTTCTAGATT 1317
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1313 CAAAAGAGATCAAAGATTTGTGGACTCAAGCTGACATTGATGGAAACGGTCTTCTAGATT 1372
Query 1318 ACAAGGAGTTTCAGCAAAGAATATGGAACCAAACCTGGTCAGAACAAAGAGATGCAGAGG 1377
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 ATAAGGAGTTTCAGCAAAGAATATGGAACCAAACCTGGTCAGAACAAAGAGATGCAGAGG 1432
Query 1378 ACGGAGAAGCAAAAGGTAACCAAGAACAAACCGTTGGATTCAGTGTCAAGAACGCGGTTC 1437
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1433 ACGGAGAAGCAAAAGGTAACCAAGAACAAACCGTTGGATTCAGTGTCAAAAACGCAGTTT 1492
Query 1438 TGTTTCCTCCCGAAGTTGAAAAAGGAATGTGGCCAGAAAATTACTCTCTATCAGATCACG 1497
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 TGTTTCCTCCTGAAGTTGAAAAAGGAATGTGGCCAGAAAATTACTCTCTATCAGATCACG 1552
Query 1498 CGAGACTCACCGTTGTATTCTCACCCATAAGAATGCCTTGCTCTCAATTGGTTTCATGAC 1557
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 CGAGACTCACTGTTGTATTCTCACCCATAAGAATGCCTTGCTCTCAATTGGTTTCATGAC 1612
Query 1558 AAAA-ACACTGACCAAACAAACTTTAGCTTCTTCCATTTA-AAGAGACCTCTGAGTTTTG 1615
|||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1613 AAAACACACTCACCAAACAAACTTTAGCTTCTTCCATTTTTAAGAGACCTCTGAGTTTTG 1672
Query 1616 GTGTCCCCTTACAGAGAA--T-C-C-----------ATTGGATCGGCTTGAATGATCTCA 1660
|||||||||||||||||| | | | ||||||||||||||| | |||||
Sbjct 1673 GTGTCCCCTTACAGAGAAACTTCGCTCTGTCTCTCCATTGGATCGGCTTGACCGCTCTCA 1732
Query 1661 CTTTGCGGTTACTGCGTTgggggggAAGAAGAGAGAAAGAGG-AC-TGAGGTCTATAAAT 1718
| |||||||| |||||||||| ||||||||||||||||| || || | ||||||||||||
Sbjct 1733 CGTTGCGGTTCCTGCGTTGGGTGGGAAGAAGAGAGAAAGGGGGACAT-AGGTCTATAAAT 1791
Query 1719 TTTTACTGTGTACAAAAACATGTAAACTAAATATAT 1754
||||||||||||||||||||||||||||||||||||
Sbjct 1792 TTTTACTGTGTACAAAAACATGTAAACTAAATATAT 1827
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86746541760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5