BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495494
Length=1393
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54140.1 | Symbols: ILL3 | IAA-leucine-resistant (ILR1)-like... 2041 0.0
> AT5G54140.1 | Symbols: ILL3 | IAA-leucine-resistant (ILR1)-like
3 | chr5:21965833-21968061 FORWARD LENGTH=1514
Length=1514
Score = 2041 bits (1105), Expect = 0.0
Identities = 1271/1349 (94%), Gaps = 19/1349 (1%)
Strand=Plus/Plus
Query 1 ATGGCTAATTCCTCAATC-TCAGCTCTTCTTCTTCTTATCCTTGTAATCGCTAGTTCCGT 59
|||||||||||||||||| | |||||||||||||| || |||| ||||||||||||||
Sbjct 1 ATGGCTAATTCCTCAATCGT-AGCTCTTCTTCTTC---TCTTTGTTATCGCTAGTTCCGT 56
Query 60 CAATGGAGGAGATCAAGAGTATTCGCATCAAT-TGCTAACAGAAGCTTTGGGTGATAAAG 118
|||||||||||||||||||||| | |||||| | |||||||||||||| ||||||||||
Sbjct 57 CAATGGAGGAGATCAAGAGTATCCAAATCAATAT-CTAACAGAAGCTTTAGGTGATAAAG 115
Query 119 AATGGTTAGTCTCTATAAGAAGACAAATCCATGAAAACCCAGAACTCCTTTTCGAGTTAC 178
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 AATGGTTAGTGTCTGTAAGAAGACAAATCCATGAAAACCCAGAACTCCTTTTCGAGTTAC 175
Query 179 ACAAAACCAGTGCTCTGATTCGTCGCGAGCTTGATTAATTAGGGGTTTCTTACTCTTACC 238
| ||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 176 ATAAAACAAGTGCTCTGATTCGTCGCGAGCTTGATGAATTAGGGGTTTCTTATTCTTACC 235
Query 239 CGGTTGCTAAAACCGGGATTGTAGCTCAAATCGGATCCGGTTATCCTCCGGTTGTTGCTC 298
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 236 CGGTTGCGAAAACCGGGATCGTAGCTCAAATCGGATCCGGTTATCCTCCGGTTGTTGCTC 295
Query 299 TCCGTGCTGATATGGATGCTCTTCCCTTGCAAGAACTTGTTGAGTGGGATCATAAGAGCA 358
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 296 TCCGTGCTGATATGGATGCTCTTCCCTTACAAGAACTTGTTGAGTGGGATCATAAGAGCA 355
Query 359 AAATCGACGGAAAAATGCATGCTTGTGGTCATGATTCACACACCACCATGCTCCTTGGTG 418
||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 356 AAATCGATGGAAAAATGCATGCTTGTGGTCATGATTCTCATACCACTATGCTCCTTGGTG 415
Query 419 CTGCTAAATTGCTTAGCAAACGTAAACGTATG-TACAATGGAACAGTGAGGCTTCTTTTT 477
|||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||
Sbjct 416 CTGCTAAATTGCTTAGCAAACGCAAACGTATGCT-CAATGGAACAGTGAGGCTTCTTTTT 474
Query 478 CAACCAGCAGAAGAAGGTGGTGCAGGTGCTTTTCACATGATAAAAGAAGGTGCTTTGGGT 537
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 475 CAACCAGCAGAAGAAGGTGGTGCAGGTGCTTTTCATATGATAAAAGAAGGTGCTTTGGGT 534
Query 538 GATTCTGAAGCAATATTTGGGATGCATGTTCATACTGGCTTACCTACAGGAGAATTAGCA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GATTCTGAAGCAATATTTGGGATGCATGTTCATACTGGCTTACCTACAGGAGAATTAGCA 594
Query 598 ACTATCCCGGGTCCTGCTATGGCATCCACAAGCATTTTCAGTGTAAGAATAAGTGG-AAT 656
|| ||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| ||
Sbjct 595 ACAATCTCGGGTCCTGCTTTGGCATCCACAAGCATTTTCAGTGTAAGAATGAGTGGTAA- 653
Query 657 ATTACCGGCTTCTTCGGAGACATATGCTTGTGTTGATCCAGTGTTGGCTGCATCATCTAC 716
|| ||| |||||||||||||| ||| ||||||||||||| ||||||||||||||||||||
Sbjct 654 ATCACCCGCTTCTTCGGAGACCTATTCTTGTGTTGATCCGGTGTTGGCTGCATCATCTAC 713
Query 717 CATCTTAGCATTGCAACTTA-TAGTCTCCAGAGAAGTAGATCCTCTCTTAAGCCATGTGC 775
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 714 CATCTTAGCATTGCAACTTATTA-TCTCCAGAGAAGTAGATCCTCTCTTAAGCCATGTGC 772
Query 776 TGTCTGTTACATTTATGAAAAGTGGCGGTTCTGAGTTTGATGTGATTCCGGCATATGTAG 835
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TCTCTGTTACATTTATGAAAAGTGGCGGTTCTGAGTTTGATGTGATTCCGGCATATGTAG 832
Query 836 AATTTGGGGGAACTTTGAGGAGTCTTACAACTGATGGCATGAACTTGTTGATAAAGCGGT 895
||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||
Sbjct 833 AATTTGGGGGAACTTTGAGGAGTCTTACAACCAATGGCATCAACTGGTTGATAAAGCGGT 892
Query 896 TGAAAGAGGTGGTTGAAGGAGAAGCTGAAGTTCATAGATGCAAAGTGGATATAGATATGC 955
|||||||||||||||||||| |||||||||| || |||||||||| ||||||||||||||
Sbjct 893 TGAAAGAGGTGGTTGAAGGACAAGCTGAAGTACAAAGATGCAAAGCGGATATAGATATGC 952
Query 956 ATGAAGACGATCATCCTATGTATCCAGCAACAGTGAACGATCACAAGCTACACGAATACG 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 953 ATGAAGACGATCATCCTATGTATCCAGCAACAGTGAACGATCACAAGCTACACGAATTCA 1012
Query 1016 CTGAAAAAGTTTTGAAACTCTTGCTTGGACCCGAGAAAGTGAAACCGGGTGGCAAGGTAA 1075
||||||| ||||||||||||||||||||||||||||| |||||||||| | ||||||||
Sbjct 1013 CTGAAAAGGTTTTGAAACTCTTGCTTGGACCCGAGAAGGTGAAACCGGCTAACAAGGTAA 1072
Query 1076 TGGCGGGTGAGGATTTTGCTTTCTATCAACAAAAAATACCCGGTTACTATC-TAGGGATC 1134
||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||
Sbjct 1073 TGGCGGGTGAGGATTTTGCTTTCTATCAACAAAAAATACCCGGTTACTA-CATAGGAATC 1131
Query 1135 GGTATCAGAAACAAAGAAATCGGTTCTGTGCATAGCG-TTCATTCGCCTTATTTCTTCCT 1193
||||| |||||| |||||||||||||||||| | || ||||||||||||||||||||||
Sbjct 1132 GGTATAAGAAACGAAGAAATCGGTTCTGTGCGTT-CGGTTCATTCGCCTTATTTCTTCCT 1190
Query 1194 CGACGAGAATGTTCTTCCCATTGGATCAGCATCGTTTGCTGCCTTAGCTGAGATGTATCT 1253
|||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1191 CGACGAGAATGTGCTTCCCATTGGATCAGCAACGTTTGCTGCCTTAGCTGAAATGTATCT 1250
Query 1254 ACAAGAGCATCAGAATCAAACTAAGTCTGGAGATTGAGAAAGT-ACTAAAGAAATCTCTT 1312
||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||
Sbjct 1251 ACAAGAGCATCAGAATCAAACTAAGTCTGGAGATTGAGAAAGTTACTAAACAAAAG-CTT 1309
Query 1313 AGTTAGTTGCCTTCATAAGTAAATGCTAT 1341
||||| ||||||||| |||||||||||||
Sbjct 1310 AGTTAATTGCCTTCACAAGTAAATGCTAT 1338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68624145015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5