BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495495
Length=565
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54145.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 429 1e-119
> AT5G54145.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G27657.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:21972465-21973083 FORWARD LENGTH=619
Length=619
Score = 429 bits (232), Expect = 1e-119
Identities = 271/289 (94%), Gaps = 5/289 (2%)
Strand=Plus/Plus
Query 1 CACTACTCAAATCTTCATCGCTTAGATCTTTCTTTAAAAACAAATCAGAAATTTTCTTAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 CACTACTCAAATCTTCATCGCTTAGATCTTTCTTTAAAAACAAATCAGAAATTTTCTTAA 61
Query 61 GAGTCAAGAAAATTTCAAGAACCTAAT-CGATAATGATCTCAGTGGTGATTATTACTGAG 119
||||||||||||||||||||||| ||| | ||||||||||||||||||||| ||||||||
Sbjct 62 GAGTCAAGAAAATTTCAAGAACC-AATTCTATAATGATCTCAGTGGTGATTCTTACTGAG 120
Query 120 CTACTAGTAGAGTACACGGCTGCTCTAGCTAAACTCACCGCCGGGATTCTTCCACGGCGA 179
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTACTAGTAGAGTACACGGCAGCTCTAGCTAAACTCACCGCCGGGATTCTTCCACGGCGT 180
Query 180 ACCGGCTATAGAAACTCCGTACGGATCGGCGGTTTTCTCCTTCCTACACCTTCTTCGAC- 238
||||| |||||||| ||||| ||||||| ||||||||||||||| |||||||||| ||
Sbjct 181 ACCGGAGATAGAAACGCCGTAAGGATCGGTGGTTTTCTCCTTCCTTCACCTTCTTCAACG 240
Query 239 A--TCGATGATTCCTGATTTCTCTTCTCACCTCGTTGATTTCTGATTTG 285
| |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 241 ACGTCGATGATTCCTGATTTCTCTTCTCATCTAGTTGATTTCTGATTTG 289
Score = 243 bits (131), Expect = 2e-63
Identities = 238/284 (84%), Gaps = 29/284 (10%)
Strand=Plus/Plus
Query 300 TCTATGATCTAATCGATGAGAAGCGACTGAGATTTTTTACCGAGTGTCTCGTCGTCTTAA 359
||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||| |
Sbjct 347 TCTATGATCTAGTCGATGAGAAGCGACTGAGA-TTTTTACTGAGTGTCTCGTCGTCTTGA 405
Query 360 ATCACGTTTTCTTGAATCGCATAGAGCTTTGTAAAATATGTATCTAA---TT-TATAT-- 413
||||||||||||||||||| ||||||||||||| ||| ||||||||| || |||||
Sbjct 406 ATCACGTTTTCTTGAATCGTATAGAGCTTTGTAGAATCTGTATCTAATTTTTATATATAG 465
Query 414 --A----T-ATAG---AG-A-AACTAATAAGTTTACTCGAGCtttttttttGCTGCCATG 461
| | |||| | | |||||||||||||||| || | |||||||| | |||||
Sbjct 466 AGATGGTTGATAGTTTTGAAGAACTAATAAGTTTACT--AGATCTTTTTTTGTTTCCATG 523
Query 462 TGATTTAAATTTTTATAGTACTTTAACATTGTTAACATTGTTAAAGGCTATGATCTTGAT 521
|||||| ||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 524 TGATTTGTGTTTTTATAGTACTTTAACA----T----TTGTTAAAGGCTATGATCTTGAT 575
Query 522 CTGTAATTTCATAACTAGATCTCTATTTTGGTTTATGGTGAATG 565
||||||||||||||||||| |||||||||| |||||||| ||||
Sbjct 576 CTGTAATTTCATAACTAGACCTCTATTTTGCTTTATGGTCAATG 619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27126439380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5