BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495496
Length=546
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54150.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 296 1e-79
AT5G54148.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 276 2e-73
AT4G27660.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 111 5e-24
> AT5G54150.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G54148.1);
Has 103 Blast hits to 99 proteins in 23 species: Archae -
0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 90; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr5:21977461-21978237
REVERSE LENGTH=483
Length=483
Score = 296 bits (160), Expect = 1e-79
Identities = 200/219 (91%), Gaps = 3/219 (1%)
Strand=Plus/Plus
Query 1 ATGGAGACGAAGGCGAGAACAAAGACATCATCATTGAAAGAAGAAGGGAGTCCACCACTC 60
|||| ||||||||||||||||| || | |||||||| |||||||||||||| ||||||
Sbjct 49 ATGGGGACGAAGGCGAGAACAACGAAACCATCATTGGAAGAAGAAGGGAGT---CCACTC 105
Query 61 AGAGGCATTTTCTGTGTGAAAACCAGACAAGACATGAAGAGAATCGAGGAAACAGAGGAC 120
||||||||||| |||||||||||||||| ||||||||||||| | || ||||||||||
Sbjct 106 AGAGGCATTTTATGTGTGAAAACCAGACGAGACATGAAGAGATTTGAAAAAACAGAGGAT 165
Query 121 TGCTTCATTCTCGATTTCAATCCTTTTGATTCGTTTGACGTTAAAAGGCTCTCATATTCC 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 166 TGCTTCATCCTCGATTTCAATCCTTTTGATTCGTTTGACGTTAAAAGGCTCTCATTTTCC 225
Query 181 CTTGATAAAGATTTGGAAATCATCCATGAGACGGGCCAG 219
|||||||||||||||||||||||||||||| | ||||||
Sbjct 226 CTTGATAAAGATTTGGAAATCATCCATGAGTCAGGCCAG 264
> AT5G54148.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G54150.1);
Has 104 Blast hits to 102 proteins in 23 species: Archae -
0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 88; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr5:21975785-21977104
REVERSE LENGTH=1103
Length=1103
Score = 276 bits (149), Expect = 2e-73
Identities = 162/168 (96%), Gaps = 2/168 (1%)
Strand=Plus/Plus
Query 219 GaaaaaaaTGGAGAAAAAGGAAGAAGATGACACACCACTAAG-AGGCATATTCTGTCTGA 277
||||||||||||||||||||||||||||||||| ||||| | ||| |||||||||||||
Sbjct 66 GAAAAAAATGGAGAAAAAGGAAGAAGATGACACGCCACT-CGTAGGGATATTCTGTCTGA 124
Query 278 AAACAAGACAAGACATGAAAAGATTCGAAGAAACAGAGGATTGCTTTATCCTCGATTTCG 337
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 125 AAACAAGACAAGACATGAAAAGGTTCGAAGAAACAGAGGATTGCTTTATCCTCGATTTCG 184
Query 338 ATCCTTTTGATTCGTTCGACGTTAAAAAACTCACCTTTACCGATGATG 385
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 ATCCTTTTGATTCGTTCGACGTTAAAAAACTCACCTTTACCGATGATG 232
Score = 174 bits (94), Expect = 7e-43
Identities = 106/112 (95%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 435 GTGTTACTGTTACGTGTGCGATAAGCCTGCTCCTTGTGCAGAGTGGATTATATCGACTTC 494
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 315 GTGTTACTGTTACGTGTGTGATAAGCCTGCTCCTTGTGCAGAGTGGACTATATCGACTTC 374
Query 495 ACATTGCAATGCTTATGACTCTACTTCGTGGAATTTGTGTAGGACAAAGTGA 546
|||||||||||| ||||||||| ||| ||||||||||||||||||| |||||
Sbjct 375 ACATTGCAATGCGTATGACTCTGCTTTGTGGAATTTGTGTAGGACATAGTGA 426
> AT4G27660.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G54150.1);
Has 115 Blast hits to 109 proteins in 25 species: Archae -
0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 100; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr4:13817095-13818136
REVERSE LENGTH=812
Length=812
Score = 111 bits (60), Expect = 5e-24
Identities = 99/117 (85%), Gaps = 6/117 (5%)
Strand=Plus/Plus
Query 228 GGA-GAAAAAGGAAGAAGA-TGACACACCACTAAGAGGCATATTCTGTCTGAAAACAAGA 285
||| ||| || |||||||| || ||||| || ||||| ||||| ||||| |||||| ||
Sbjct 208 GGAGGAAGAA-GAAGAAGAGGGA-ACACCTCTCAGAGGTATATTTTGTCTCAAAACACGA 265
Query 286 CAAGACATGAAAAGATTCGAAGA-AACAGAGGATTGCTTTATCCTCGATTTCGATCC 341
||||| ||||| | |||||||| || ||||||||||||||||||||||||||||||
Sbjct 266 CAAGATATGAAGATTTTCGAAGAGAA-AGAGGATTGCTTTATCCTCGATTTCGATCC 321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26171990587
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5