BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495499
Length=1611
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54180.1 | Symbols: PTAC15 | plastid transcriptionally activ... 2507 0.0
> AT5G54180.1 | Symbols: PTAC15 | plastid transcriptionally active
15 | chr5:21988457-21990228 FORWARD LENGTH=1635
Length=1635
Score = 2507 bits (1357), Expect = 0.0
Identities = 1531/1616 (95%), Gaps = 7/1616 (0%)
Strand=Plus/Plus
Query 1 AATCTTTGGTTATTAAAGTAAACCCATCTTGGAATCAAACACGACCGTTAAAATCAGAAA 60
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 4 AATCTTTGATTATTAAAGTTAACCCATCTTGGAATCAAACACGACCGTTAAAATCAGAAA 63
Query 61 CCTTGGTTTTGGATAT----AGCCATGGTGATCTTATCTCTAGTCTCTTGTTCCTTCTCC 116
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 64 CCTTGGTTTTGGATATAGCCAGCCATGGTGATCTTATCTCTCGTCTCTTGTTCCTTCTCC 123
Query 117 GTTTTCTCACCGCCGATTAGTCTCCGCCTTCATCTCCCGCCGGTTACATCTCTCTGTTCC 176
|||||||||||||||||||||||||| ||||||||||||||||| || |||||||| |||
Sbjct 124 GTTTTCTCACCGCCGATTAGTCTCCGGCTTCATCTCCCGCCGGTAACTTCTCTCTGCTCC 183
Query 177 AATGGAACCTTCCCTACTTCTTCTACATTTCGGTCTCAGCTACAGCCATTTCTTATCAGC 236
|||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 184 CATGGAACCTTCCCTGCTTCTTCTACATTTCGGTCTCAGCTACAACCATTGCTTATCAGC 243
Query 237 TGCTTAAATCATCGAGAACCTTCTCTAATTTTCCGACGTAGTTGCCTTAGTTCAAATATT 296
||||||||||||||||||||| || ||| ||||||| |||| |||||||| || |||
Sbjct 244 TGCTTAAATCATCGAGAACCTGCTTTAACTTTCCGATGTAGCTGCCTTAGCTCTCCGATT 303
Query 297 GACGCCGGAAGTCAAATTGAGTCTCTGTTTTCGTTATTCCGAGATATTGGGTTTATAGAA 356
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 304 GAATCCGGAAGTCAAATTGAATCTCTGTTTTCGTTATTCCGAGATATTGGGTTTATAGAA 363
Query 357 GAAGAAACTGAGATGATTTTAGCGAAGAACCCAGATATAAAGTCGGCATCTTTGGATAAA 416
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 364 GAAGAAACTGAGATGATTTTAGCGAAGAACCCAGATATAAAGTCGACATCTTTGGATAAA 423
Query 417 ATCGGTGCTCGTGTTGCTTCTCTTCAGTCTCTGAAAATCGATGGCTTTGCGCTTCAGGGT 476
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 424 ATCGGTGCTCGTGTTGCTTCTCTTCAGTCTCTGAAAATCAATGGCTTCCCGCTTCAGGGT 483
Query 477 TTGATTGCAAAGTGTCCTAATTTATTGACTTCAGAAGAATTTGATCCCATTATTAGTTTC 536
||||| || ||||| ||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 484 TTGATAGCTAAGTGCCCTAATTTATTGACTTCAGAAGAATTTGATCTCGTTATTAGTTTC 543
Query 537 TTGGTTGATGAACTCGAAGCAAGGCTTGATCCTGAACTAGTGGAGCGCTTACTCTCTGTG 596
|| ||||||||||| |||| |||||||||||||||| |||| ||||||||||||||||||
Sbjct 544 TTAGTTGATGAACTTGAAGGAAGGCTTGATCCTGAATTAGTTGAGCGCTTACTCTCTGTG 603
Query 597 GTAGACACATCTATCTTGCTTAGTTTTAATCAGAAGGTGAGATTGCTTCTCCTCCATGGA 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 GTAGACACATCTATCTTGCTTAGTTTTAATCAGAAGGTGAGATTGCTTCTCCTCCATGGG 663
Query 657 ATCCCTAAAGAAAAGATCTCTCATGTATTGAACAAAGTGTATCTAAATAAACTGCTGTAT 716
|| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 664 ATACCTAAAGAAAAGATCTCTCATGTATTGAACAAAGTGTACCTAAATAAATTGCTGTAT 723
Query 717 CAGAAATCAGTTGAGGACATTGAGAGATTGATTAGTTTCTTGGAACCTTTTGGTGGAATC 776
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 724 CAGAAATCAGTTGAAGATATTGAGAGATTGATTAGTTTCTTGGAACCTTTTGGTGGAATT 783
Query 777 GGTATAATTGCGAGGCGGCCAGTGATTCTCAACAGTGACTTGGATAGTCAGTTGATTCCT 836
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 784 GGTATAATTGCTAGGCGGCCAGTGATTCTCAATAGTGACTTGGATAGTCAGTTGATTCCT 843
Query 837 AGGGTTGATTTCATTAGGAATCTAAGCGGGGAAGACGATTTCGCTACTGGAACGGTGCTA 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 AGGGTTGATTTCATTAGGAATCTAAGCGGGGAAGACGATTTCGCTACTGGAACGGTGCTA 903
Query 897 CGTAGACTTCCTGCCATATTGAGTTACAGTGTTGAGCATATGAACAGCCACGTCGAGTTT 956
|||||||||||||||||||||||||| |||||||||||||||||| |||| || ||||||
Sbjct 904 CGTAGACTTCCTGCCATATTGAGTTATAGTGTTGAGCATATGAACGGCCAAGTAGAGTTT 963
Query 957 CTCAAGTCTTTTGCTGGCTTGACGAGCGAGCAAGTTTTTAAGATTGTTCATGTGTTCCCG 1016
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 964 CTCAAGTCTTTTGCTGGCTTGACGAGTGAGCAAGTGTTTAAGATTGTTCATGTGTTCCCT 1023
Query 1017 AATGTTATCAGCACTAGTAAAGAGAGGAAGCTGCGTCCGAGGATAGAGTTTCTGAAGGAA 1076
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1024 AATGTTATCAGCACTAGTAAAGAGAGGAAACTGCGCCCGAGGATAGAGTTTCTGAAGGAA 1083
Query 1077 TGTGGCTTTGATTCCCCCGGCATGTTCAAATTCTTGAGTAAAGCACCGTTGATTCTAGCT 1136
|| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1084 TGCGGCTTTGATTCCCCCGGCATGTTCAAATTCTTGAGTAAAGCACCATTGATTTTAGCT 1143
Query 1137 CTATCTGAAGATAATCTCTCGCACAAACTCGGGTTTT-TAGTAAAGATTGGATATAAGCA 1195
||||| ||| |||||||||||||||||||||| |||| | || |||||||||||||||||
Sbjct 1144 CTATCCGAAAATAATCTCTCGCACAAACTCGG-TTTTCTGGTGAAGATTGGATATAAGCA 1202
Query 1196 CAGAACAAAGGAACTGGCCTTTGCGATGGGAGCTGTGACCAGAACAAGCTCTGACAATAT 1255
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 TAGAACAAAGGAACTGGCCTTTGCGATGGGAGCTGTGACCAGAACAAGCTCTGACAATAT 1262
Query 1256 GCAGAGGGTAATTGGACTGTACTTGAGCTACGGTCTTTCGTACGAAGACATTCTAGCGAT 1315
||||||||| ||||||||||||||||| || |||||||| | ||||||||||||||| ||
Sbjct 1263 GCAGAGGGTTATTGGACTGTACTTGAGTTATGGTCTTTCATTCGAAGACATTCTAGCAAT 1322
Query 1316 GAGCACAAAGCATCCTCAAGTCCTGCAGTATAATTATAGTTCTTTAGAAGAAAAACTGGA 1375
||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1323 GAGCACAAAACATCCTCAAGTCCTGCAGTATAATTATACTTCTTTAGAGGAAAAACTGGA 1382
Query 1376 GTATTTGATCGAGTACATGGGTCGTGAAGTCGAAGAGCTTCTTGCATTCCCTGCATTTCT 1435
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1383 GTATTTGATCGAGTACATGGGTCGTGAAGTCGAAGAACTTCTTGCATTCCCTGCATTTCT 1442
Query 1436 TGGGTACAAGCTTGATAGCAGGATCAAGCATCGGTATGAAGAAAAGTTGAAGAGCAGAGG 1495
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 TGGATACAAGCTTGATAGCAGGATCAAGCATCGGTATGAAGAAAAGTTGAAGAGCAGAGG 1502
Query 1496 TGAGAACATGTCTCTTAACAAGCTTTTGACAGTGTCAGCTGAAAGATTCTCTAAGGCGGC 1555
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1503 TGAGAACATGTCTCTTAACAAGCTTTTGACAGTATCAGCTGAAAGATTCTCTAAGGCGGC 1562
Query 1556 TGATAATATTGAAATGATTTGTTTATGAACCAAGTTTGAGTTCATTGAGAAGTTAC 1611
||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1563 TGATAATATCGAAATGATTTGTTTATGA-CCAAGTTTGAGTTCATTGAGAACTTAC 1617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79567863825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5