BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg495500

Length=528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G53742.1 | Symbols:  | Protein of unknown function (DUF1278)...   405    2e-112
  AT5G54062.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   350    1e-95 


> AT5G53742.1 | Symbols:  | Protein of unknown function (DUF1278) 
| chr5:21813671-21814018 FORWARD LENGTH=348
Length=348

 Score =  405 bits (219),  Expect = 2e-112
 Identities = 264/285 (93%), Gaps = 6/285 (2%)
 Strand=Plus/Plus

Query  247  GCACCCGCACACACGACACCTCAATTCCCTT-TCATCCCTGGTTCTCCGAACGATCTCAC  305
            |||||  ||||||||| ||||||||| |||| |||||||||||||||||| |||||||||
Sbjct  67   GCACCAACACACACGAAACCTCAATT-CCTTGTCATCCCTGGTTCTCCGATCGATCTCAC  125

Query  306  AAAATGTTTGTCATCACTTGTCAACGTTGAAGGTTGCGTAAGTGAAATCCACAAATCAGT  365
            ||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||
Sbjct  126  AAAATGTTTGTCATCACTTGTTAACGTTGAAGGTTGCGTAACTGAAATCTACAAATCAGT  185

Query  366  TTTCACAGGAAAGTTTGGTAATGTTGGACCA-ATGTGCTGCAAGGCGTTTTCAGCTGTGG  424
            ||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||
Sbjct  186  TTTCACAGGAAAGTTTGGTAATGTTGGAT-ATATGTGCTGCAAGGCGTTTTCAGCTGTGG  244

Query  425  ATGCAAAATATTGGCCACAGATGTTTCCGTTTAATCCGTTCTTCCCTCCTCTTCTCAAGA  484
            ||| ||||| ||||||||| ||||||||| | ||||||||||||||||||||||||||||
Sbjct  245  ATGTAAAATGTTGGCCACAAATGTTTCCGCTAAATCCGTTCTTCCCTCCTCTTCTCAAGA  304

Query  485  ATGAATGTTCTCGC-ATCAACGCAGCCACTCCTACACACAAGTGA  528
            | |||||||||| | |||||||||||||||||||||||||| |||
Sbjct  305  AGGAATGTTCTC-CTATCAACGCAGCCACTCCTACACACAAATGA  348


> AT5G54062.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: 
Protein of unknown function DUF1278 (InterPro:IPR010701); 
BEST Arabidopsis thaliana protein match is: Protein of unknown 
function (DUF1278) (TAIR:AT5G53742.1); Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21938793-21939623 
FORWARD LENGTH=831
Length=831

 Score =  350 bits (189),  Expect = 1e-95
 Identities = 254/286 (89%), Gaps = 2/286 (1%)
 Strand=Plus/Plus

Query  244  GGTGCACCCGCACACACGACACCTCAATTCCCTTTCATCCCTGGTTCTCCGAACGATCTC  303
            |||||||| ||||||| |||||| ||||||||| |||||||||||||||||| |||||||
Sbjct  404  GGTGCACCAGCACACAAGACACCGCAATTCCCTGTCATCCCTGGTTCTCCGATCGATCTC  463

Query  304  ACAAAATGTTTGTCATCACTTGTCAACGTTGAAGGTTGCGTAAGTGAAATCCACAAATCA  363
            |||||||||||||||||||||||||||||| ||||||| |||| ||||||| ||||||||
Sbjct  464  ACAAAATGTTTGTCATCACTTGTCAACGTTCAAGGTTGTGTAACTGAAATCTACAAATCA  523

Query  364  GTTTTCACAGGAAAGTTTGGTAATGTTGGACCAATGTGCTGCAAGGCGTTT-TCAGCTGT  422
            |||||||||||||||| || ||| || |||   |||||||||||||||||| |  |||||
Sbjct  524  GTTTTCACAGGAAAGTGTGATAACGTAGGATTTATGTGCTGCAAGGCGTTTATG-GCTGT  582

Query  423  GGATGCAAAATATTGGCCACAGATGTTTCCGTTTAATCCGTTCTTCCCTCCTCTTCTCAA  482
            ||||||||||| ||||||| | ||||||||  | |||||||||||||||||||| |||||
Sbjct  583  GGATGCAAAATGTTGGCCAAAAATGTTTCCACTAAATCCGTTCTTCCCTCCTCTCCTCAA  642

Query  483  GAATGAATGTTCTCGCATCAACGCAGCCACTCCTACACACAAGTGA  528
             |||| |||||||||||||||| || |  |||||||||||||||||
Sbjct  643  AAATGTATGTTCTCGCATCAACACATCTGCTCCTACACACAAGTGA  688


 Score =  145 bits (78),  Expect = 5e-34
 Identities = 84/87 (97%), Gaps = 0/87 (0%)
 Strand=Plus/Plus

Query  2    TGGATGCAAAGTGTTGGCCAAAACTGTTTCCGTTGAATCCGTTATTCCCTCCTCTTCTTA  61
            ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
Sbjct  318  TGGATGCAAAGTGTTGGCCAAAAATGTTTCCGTTGAATCCATTATTCCCTCCTCTTCTCA  377

Query  62   AGGATGGTTGCTCTCGCATCATCTCAG  88
            |||||||||||||||||||||||||||
Sbjct  378  AGGATGGTTGCTCTCGCATCATCTCAG  404



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25267775941


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5